From 545f4f9e511d8e39a808a1c24de37eb33d2f026e Mon Sep 17 00:00:00 2001
From: Christoph Helma <helma@in-silico.ch>
Date: Fri, 28 Jan 2011 18:11:15 +0100
Subject: auth added

---
 Rakefile     | 13 +++++++++----
 algorithm.rb |  2 +-
 lazar.rb     | 14 +++++++++-----
 model.rb     |  2 +-
 4 files changed, 20 insertions(+), 11 deletions(-)

diff --git a/Rakefile b/Rakefile
index a287f95..d260989 100644
--- a/Rakefile
+++ b/Rakefile
@@ -1,12 +1,17 @@
 require 'rubygems'
 require 'opentox-ruby'
 
-TEST_USER = "guest"
-TEST_PW   = "guest"
+if File.exists? "auth.rb"
+  require "auth"
+else
+  #exit "Please create an authenticatio
+    TEST_USER = "guest"
+    TEST_PW   = "guest"
+end
 
 task ARGV[0] do
-  puts ENV["RACK_ENV"]
-  puts ARGV[0]+".rb"
+  puts "Environment: #{ENV["RACK_ENV"]}"
+  puts "Test: "+ARGV[0]+".rb"
   require "./"+ARGV[0]+".rb"
 end
 
diff --git a/algorithm.rb b/algorithm.rb
index 94f3b5c..650a6df 100644
--- a/algorithm.rb
+++ b/algorithm.rb
@@ -20,7 +20,7 @@ class AlgorithmTest < Test::Unit::TestCase
 
   def test_metadata
     @algorithms.each do |algorithm|
-      puts algorithm
+      #puts algorithm
       validate_owl(algorithm, @@subjectid)
     end
   end
diff --git a/lazar.rb b/lazar.rb
index 280f917..a1ab6db 100644
--- a/lazar.rb
+++ b/lazar.rb
@@ -31,8 +31,10 @@ class LazarTest < Test::Unit::TestCase
     model_uri = OpenTox::Algorithm::Lazar.new.run({:dataset_uri => @@classification_training_dataset.uri, :subjectid => @@subjectid}).to_s
     lazar = OpenTox::Model::Lazar.find model_uri, @@subjectid
     assert_equal lazar.features.size, 41
+
     # single prediction
     compound = OpenTox::Compound.from_smiles("c1ccccc1NN")
+    #puts compound.uri
     prediction_uri = lazar.run(:compound_uri => compound.uri, :subjectid => @@subjectid)
     prediction = OpenTox::LazarPrediction.find(prediction_uri, @@subjectid)
     assert_equal prediction.value(compound), false
@@ -44,7 +46,7 @@ class LazarTest < Test::Unit::TestCase
     prediction_uri  = lazar.run(:compound_uri => compound.uri, :subjectid => @@subjectid)
     prediction = OpenTox::LazarPrediction.find prediction_uri, @@subjectid
     assert !prediction.measured_activities(compound).empty?
-    puts prediction.measured_activities(compound).first.inspect
+    #puts prediction.measured_activities(compound).first.inspect
     assert_equal prediction.measured_activities(compound).first, true
     assert prediction.value(compound).nil?
     prediction.delete(@@subjectid)
@@ -53,13 +55,15 @@ class LazarTest < Test::Unit::TestCase
     prediction = OpenTox::LazarPrediction.find lazar.run(:dataset_uri => test_dataset.uri, :subjectid => @@subjectid), @@subjectid
     assert_equal prediction.compounds.size, 4
     compound = OpenTox::Compound.new prediction.compounds.first
-    puts "compound"
-    puts compound.inspect
-    puts "prediction"
-    puts prediction.value(compound).inspect
+    #puts "compound"
+    #puts compound.inspect
+    #puts "prediction"
+    #puts prediction.value(compound).inspect
     assert_equal prediction.value(compound), false
     prediction.delete(@@subjectid)
     lazar.delete(@@subjectid)
+=begin
+=end
   end
 
 end
diff --git a/model.rb b/model.rb
index c1832fd..098ed5f 100644
--- a/model.rb
+++ b/model.rb
@@ -17,7 +17,7 @@ class ModelTest < Test::Unit::TestCase
 
   def test_metadata
     @models.each do |model|
-      puts model
+      #puts model
       validate_owl(model)
     end
   end
-- 
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