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authorChristoph Helma <helma@in-silico.ch>2011-05-23 14:06:00 +0000
committerChristoph Helma <helma@in-silico.ch>2011-05-23 14:06:00 +0000
commitf48e41548ebb693c1abba8ad1b2a671fae0c118a (patch)
tree4bcaaf6c41372070401957d8b0d3f9ae46983428
parentd434ab913b637c6334b159f603596e5ea95cbdc5 (diff)
owl-dl fixed for model and prediction datasets
-rw-r--r--fminer.rb8
m---------last-utils0
-rw-r--r--lazar.rb4
m---------libfminer0
-rw-r--r--openbabel.rb2
5 files changed, 7 insertions, 7 deletions
diff --git a/fminer.rb b/fminer.rb
index d0ea4f4..79b0d06 100644
--- a/fminer.rb
+++ b/fminer.rb
@@ -23,7 +23,7 @@ get "/fminer/bbrc/?" do
DC.title => 'fminer backbone refinement class representatives',
DC.creator => "andreas@maunz.de, helma@in-silico.ch",
DC.contributor => "vorgrimmlerdavid@gmx.de",
- OT.isA => OTA.PatternMiningSupervised,
+ RDF.type => [OT.Algorithm,OTA.PatternMiningSupervised],
OT.parameters => [
{ DC.description => "Dataset URI", OT.paramScope => "mandatory", DC.title => "dataset_uri" },
{ DC.description => "Feature URI for dependent variable", OT.paramScope => "mandatory", DC.title => "prediction_feature" },
@@ -44,7 +44,7 @@ get "/fminer/last/?" do
DC.title => 'fminer latent structure class representatives',
DC.creator => "andreas@maunz.de, helma@in-silico.ch",
DC.contributor => "vorgrimmlerdavid@gmx.de",
- OT.isA => OTA.PatternMiningSupervised,
+ RDF.type => [OT.Algorithm,OTA.PatternMiningSupervised],
OT.parameters => [
{ DC.description => "Dataset URI", OT.paramScope => "mandatory", DC.title => "dataset_uri" },
{ DC.description => "Feature URI for dependent variable", OT.paramScope => "mandatory", DC.title => "prediction_feature" },
@@ -195,7 +195,7 @@ post '/fminer/bbrc/?' do
features << smarts
metadata = {
OT.hasSource => url_for('/fminer/bbrc', :full),
- OT.isA => OT.Substructure,
+ RDF.type => [OT.Feature, OT.Substructure],
OT.smarts => smarts,
OT.pValue => p_value.to_f,
OT.effect => effect,
@@ -343,7 +343,7 @@ post '/fminer/last/?' do
unless features.include? smarts
features << smarts
metadata = {
- OT.isA => OT.Substructure,
+ RDF.type => [OT.Feature, OT.Substructure],
OT.hasSource => feature_dataset.uri,
OT.smarts => smarts,
OT.pValue => p_value.to_f.abs,
diff --git a/last-utils b/last-utils
-Subproject daafa32e330b27111df6dc7193a6ed72fae2be4
+Subproject 04bd1b73f54bb7422d3c08bb5a81bc02af04f6f
diff --git a/lazar.rb b/lazar.rb
index 67d9f74..a4e006b 100644
--- a/lazar.rb
+++ b/lazar.rb
@@ -141,9 +141,9 @@ post '/lazar/?' do
lazar.metadata[OT.trainingDataset] = dataset_uri
lazar.metadata[OT.featureDataset] = feature_dataset_uri
if training_activities.feature_type.to_s == "classification"
- lazar.metadata[OT.isA] = OTA.ClassificationLazySingleTarget
+ lazar.metadata[RDF.type] = [OT.Model, OTA.ClassificationLazySingleTarget]
elsif training_activities.feature_type.to_s == "regression"
- lazar.metadata[OT.isA] = OTA.RegressionLazySingleTarget
+ lazar.metadata[RDF.type] = [OT.Model, OTA.RegressionLazySingleTarget]
end
lazar.metadata[OT.parameters] = [
diff --git a/libfminer b/libfminer
-Subproject 01b8e50e8e6fb3ce29fc8bf0a65a8c6f6af94b3
+Subproject 6514520638b8309ec9bf379bce54f45d3a53419
diff --git a/openbabel.rb b/openbabel.rb
index 3a873c0..1644455 100644
--- a/openbabel.rb
+++ b/openbabel.rb
@@ -44,7 +44,7 @@ get '/openbabel/:property' do
DC.title => params[:property],
DC.creator => "helma@in-silico.ch",
DC.description => description,
- OT.isA => OTA.DescriptorCalculation,
+ RDF.type => [OTA.DescriptorCalculation],
}
response['Content-Type'] = 'application/rdf+xml'
algorithm.to_rdfxml