summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorrautenberg <rautenberg@in-silico.ch>2015-07-02 12:11:15 +0200
committerrautenberg <rautenberg@in-silico.ch>2015-07-02 12:11:15 +0200
commit00bb00872506ffc4325ffd26c72107bb747f5f49 (patch)
treeb5c1c69d3c7528610688786617883dcdcd8fc5f3
parent86b6c32ac25e1b5ffc8eecd264682bf0ee77d44d (diff)
API: add routes post: /fminer/bbrc and /fminer/last
-rw-r--r--api/algorithm.json140
1 files changed, 139 insertions, 1 deletions
diff --git a/api/algorithm.json b/api/algorithm.json
index 8cd5eb5..a50ceb4 100644
--- a/api/algorithm.json
+++ b/api/algorithm.json
@@ -290,6 +290,68 @@
"$ref": "#/responses/404"
}
}
+ },
+ "post": {
+ "tags": [
+ "algorithm"
+ ],
+ "description": "run bbrc algorithm on dataset",
+ "parameters": [
+ {
+ "$ref": "#/parameters/dataset_uri"
+ },
+ {
+ "$ref": "#/parameters/prediction_feature"
+ },
+ {
+ "$ref": "#/parameters/min_frequency"
+ },
+ {
+ "$ref": "#/parameters/feature_type"
+ },
+ {
+ "name": "backbone",
+ "description": "BBRC classes, pass 'false' to switch off mining for BBRC representatives.",
+ "in": "header",
+ "required": false,
+ "type": "string",
+ "enum": [
+ true,
+ false
+ ],
+ "default": true
+ },
+ {
+ "name": "min_chisq_significance",
+ "description": "Significance threshold (between 0 and 1)",
+ "in": "header",
+ "required": false,
+ "type": "string"
+ },
+ {
+ "$ref": "#/parameters/nr_hits"
+ },
+ {
+ "$ref": "#/parameters/get_target"
+ }
+ ],
+ "produces": [
+ "text/uri-list"
+ ],
+ "responses": {
+ "202": {
+ "$ref": "#/responses/202"
+ },
+ "400": {
+ "$ref": "#/responses/400"
+ },
+ "401": {
+ "$ref": "#/responses/401"
+ },
+ "404": {
+ "$ref": "#/responses/404"
+ }
+ }
}
},
"/algorithm/fminer/bbrc/sample": {
@@ -356,6 +418,49 @@
"$ref": "#/responses/404"
}
}
+ },
+ "post": {
+ "tags": [
+ "algorithm"
+ ],
+ "description": "Run last algorithm on a dataset",
+ "parameters": [
+ {
+ "$ref": "#/parameters/dataset_uri"
+ },
+ {
+ "$ref": "#/parameters/prediction_feature"
+ },
+ {
+ "$ref": "#/parameters/min_frequency"
+ },
+ {
+ "$ref": "#/parameters/feature_type"
+ },
+ {
+ "$ref": "#/parameters/nr_hits"
+ },
+ {
+ "$ref": "#/parameters/get_target"
+ }
+ ],
+ "produces": [
+ "text/uri-list"
+ ],
+ "responses": {
+ "202": {
+ "$ref": "#/responses/202"
+ },
+ "400": {
+ "$ref": "#/responses/400"
+ },
+ "401": {
+ "$ref": "#/responses/401"
+ },
+ "404": {
+ "$ref": "#/responses/404"
+ }
+ }
}
},
"/algorithm/fminer/{method}/match": {
@@ -415,7 +520,7 @@
},
"prediction_feature": {
"name": "prediction_feature",
- "description": "URI of the feature to be predicted",
+ "description": "URI of the feature to be predicted (i.e. dependent variable)",
"in": "header",
"required": false,
"type": "string"
@@ -427,6 +532,39 @@
"required": false,
"type": "string"
},
+ "min_frequency": {
+ "name": "min_frequency",
+ "description": "Minimum frequency (default 5)",
+ "in": "header",
+ "required": false,
+ "type": "string"
+ },
+ "feature_type": {
+ "name": "feature_type",
+ "description": "Feature type, can be 'paths' or 'trees' (default 'trees')",
+ "in": "header",
+ "required": false,
+ "type": "string",
+ "enum": [
+ "path",
+ "trees"
+ ],
+ "default": "trees"
+ },
+ "nr_hits": {
+ "name": "nr_hits",
+ "description": "Set to 'true' to get hit count instead of presence",
+ "in": "header",
+ "required": false,
+ "type": "string"
+ },
+ "get_target": {
+ "name": "get_target",
+ "description": "Set to 'true' to obtain target variable as feature",
+ "in": "header",
+ "required": false,
+ "type": "string"
+ },
"accept_representation": {
"name": "accept",
"in": "header",