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authormguetlein <martin.guetlein@gmail.com>2012-11-06 07:54:06 +0100
committermguetlein <martin.guetlein@gmail.com>2012-11-06 07:54:06 +0100
commite3792d6cab8fe3bda2287347f0e8ffc028121509 (patch)
tree135c578c94afd9900511e6e519c18d1402347758
parentcc6eadf4196778132d6f3ed7de1ff2bb7db984d4 (diff)
pushing all changes for val_expval_exp
-rw-r--r--algorithm_test.rb34
1 files changed, 27 insertions, 7 deletions
diff --git a/algorithm_test.rb b/algorithm_test.rb
index 428ed2b..ab9e7f2 100644
--- a/algorithm_test.rb
+++ b/algorithm_test.rb
@@ -53,23 +53,43 @@ class AlgorithmTest < Test::Unit::TestCase
##dataset_uri = "http://local-ot/dataset/1488"
#prediction_feature = "http://local-ot/dataset/1315/feature/Rodent%20carcinogenicity"
- #kazius 250 no features
- dataset_uri = "http://local-ot/dataset/9264"
- prediction_feature = dataset_uri+"/feature/endpoint"
- feature_dataset_uri = "http://local-ot/dataset/91409"
+ #EPAFHM 580compounds no features
+ #dataset_uri = "http://local-ot/dataset/119310"
+ #prediction_feature = "http://local-ot/dataset/119310/feature/LC50_mmol_LOG"
+
+ ##kazius 250 no features
+ #dataset_uri = "http://local-ot/dataset/12086"
+ #prediction_feature = dataset_uri+"/feature/endpoint"
+ #feature_dataset_uri = "http://local-ot/dataset/91409"
+
+ dataset_uri = "http://virtual4:8004/dataset/200615"
+ prediction_feature = "http://virtual4:8004/dataset/3/feature/Outcome"
params = {:dataset_uri=>dataset_uri,
:prediction_feature=>prediction_feature,
- :min_frequency=>7, :max_num_features=>300} #multi: 10=>4, 5=>>3000
+ :min_frequency=>24, :max_num_features=>1000} #multi: 10=>4, 5=>>3000
+
+ post "/fminer/bbrc",params
+ uri = wait_for_task(last_response.body)
+ puts uri
+ exit
+
+ #uri = "http://local-ot/dataset/12117"
+ uri = "http://local-ot/dataset/12086"
+ d = OpenTox::Dataset.find(uri)
+ r = OpenTox::RUtil.new()
+ puts r.dataset_to_dataframe(d,"0")
+ r.quit_r
+
+ exit
# params = {:dataset_uri=>dataset_uri,
# :prediction_feature=>prediction_feature, :feature_dataset_uri=>feature_dataset_uri}
# post "/lazar",params
#post "/fminer/bbrc",params
- #uri = wait_for_task(last_response.body)
- #puts uri
+
#puts OpenTox::RestClientWrapper.post(File.join(CONFIG[:services]["opentox-algorithm"],"fminer/bbrc"),params)