diff options
| author | Christoph Helma <helma@in-silico.de> | 2010-01-22 13:15:27 +0100 |
|---|---|---|
| committer | Christoph Helma <helma@in-silico.de> | 2010-01-22 13:15:27 +0100 |
| commit | cd77b6880a7b0d34536e645dd057ceff40705456 (patch) | |
| tree | f7fb26a77433f87e989d17e9d1f2ed251ef77eb4 /fminer.rb | |
| parent | 180a017b54bb7858cccb6235e2966162612e7085 (diff) | |
central config.ru, logger instead of puts
Diffstat (limited to 'fminer.rb')
| -rw-r--r-- | fminer.rb | 20 |
1 files changed, 11 insertions, 9 deletions
@@ -17,7 +17,7 @@ post '/fminer/?' do Spork.spork(:logger => LOGGER) do - LOGGER.info "Task #{task.uri} created" + LOGGER.debug "Task #{task.uri} created" task.started feature_dataset = OpenTox::Dataset.new @@ -31,19 +31,21 @@ post '/fminer/?' do compounds = [] @@fminer.Reset training_dataset.feature_values(feature_uri).each do |c,f| + LOGGER.debug c.to_s smiles = OpenTox::Compound.new(:uri => c.to_s).smiles + LOGGER.debug smiles.to_s compound = feature_dataset.find_or_create_compound(c.to_s) - puts "No #{feature_uri} for #{c.to_s}." if f.size == 0 + LOGGER.debug "No #{feature_uri} for #{c.to_s}." if f.size == 0 f.each do |act| - #puts act + LOGGER.debug act.to_s case act.to_s - when "true" - #puts smiles + "\t" + true.to_s + when /^true|active|1$/ + LOGGER.debug smiles + "\t" + true.to_s compounds[id] = compound @@fminer.AddCompound(smiles,id) @@fminer.AddActivity(true, id) - when "false" - #puts smiles + "\t" + false.to_s + when /^false|inactive|0$/ + LOGGER.debug smiles + "\t" + false.to_s compounds[id] = compound @@fminer.AddCompound(smiles,id) @@fminer.AddActivity(false, id) @@ -69,7 +71,7 @@ post '/fminer/?' do effect = 'deactivating' end tuple = feature_dataset.create_tuple(bbrc_feature,{ url_for('/fminer#smarts',:full) => smarts, url_for('/fminer#p_value',:full) => p_value, url_for('/fminer#effect',:full) => effect }) - #puts "#{f[0]}\t#{f[1]}\t#{effect}" + LOGGER.debug "#{f[0]}\t#{f[1]}\t#{effect}" ids.each do |id| feature_dataset.add_tuple compounds[id], tuple end @@ -77,7 +79,7 @@ post '/fminer/?' do end uri = feature_dataset.save # does not return - LOGGER.info "Dataset #{uri} created." + LOGGER.debug "Dataset #{uri} created." task.completed(uri) end task.uri |