diff options
Diffstat (limited to 'lib/fminer.rb')
| -rw-r--r-- | lib/fminer.rb | 12 |
1 files changed, 2 insertions, 10 deletions
diff --git a/lib/fminer.rb b/lib/fminer.rb index 666cefa..37be183 100644 --- a/lib/fminer.rb +++ b/lib/fminer.rb @@ -186,16 +186,8 @@ module OpenTox # @param [Integer] per-mil value # return [Integer] min-frequency def min_frequency(training_dataset,prediction_feature,per_mil) - nr_labeled_cmpds = DataEntry.where(dataset_id: training_dataset.id, feature_id: prediction_feature.id).in(compound_id: training_dataset.compound_ids).count - #nr_labeled_cmpds=0 - #f_idx=training_dataset.features.index prediction_feature - #training_dataset.compounds.each_with_index { |cmpd, c_idx| - #if ( training_dataset.data_entries[c_idx] ) - #unless training_dataset.data_entries[c_idx][f_idx].nil? - #nr_labeled_cmpds += 1 - #end - #end - #} + i = training_dataset.feature_ids.index prediction_feature.id + nr_labeled_cmpds = training_dataset.data_entries.select{|de| !de[i].nil?}.size minfreq = per_mil * nr_labeled_cmpds.to_f / 1000.0 # AM sugg. 8-10 per mil for BBRC, 50 per mil for LAST minfreq = 2 unless minfreq > 2 Integer (minfreq) |