From 21d1acd5b8d14f698f0641ef5fa969a26c001406 Mon Sep 17 00:00:00 2001 From: Andreas Maunz Date: Mon, 21 Mar 2011 09:35:31 -0700 Subject: AM: Added subtree mining --- README.md | 26 +++++++++++++++++--------- 1 file changed, 17 insertions(+), 9 deletions(-) diff --git a/README.md b/README.md index 0eb641c..0516921 100644 --- a/README.md +++ b/README.md @@ -18,15 +18,16 @@ REST operations last algorithm Get a representation of the GET /lazar - lazar representation 200,404 lazar algorithm - Create bbrc features POST /fminer/bbrc dataset_uri, URI for feature dataset 200,400,404,500 - feature_uri, - min_frequency - Create last features POST /fminer/last dataset_uri, URI for feature dataset 200,400,404,500 - feature_uri, - min_frequency - Create lazar model POST /lazar dataset_uri, URI for lazar model 200,400,404,500 - prediction_feature, - feature_generation_uri + Create bbrc features POST /fminer/bbrc dataset_uri, URI for feature dataset 200,400,404,500 + feature_uri, + [min_frequency=5 per-mil], + [backbone] + Create last features POST /fminer/last dataset_uri, URI for feature dataset 200,400,404,500 + feature_uri, + [min_frequency=8 %], + Create lazar model POST /lazar dataset_uri, URI for lazar model 200,400,404,500 + prediction_feature, + feature_generation_uri Supported MIME formats ---------------------- @@ -45,6 +46,13 @@ Examples curl http://webservices.in-silico.ch/algorithm/lazar +### Create the full set of frequent and significant subtrees + + curl -X POST -d dataset_uri={datset_uri} -d prediction_feature={feature_uri} -d min_frequency={min_frequency} -d "backbone=false" http://webservices.in-silico.ch/algorithm/fminer/bbrc + +feature_uri specifies the dependent variable from the dataset. +backbone=false reduces BBRC mining to frequent and correlated subtree mining (much more descriptors are produced). + ### Create [BBRC](http://bbrc.maunz.de) features curl -X POST -d dataset_uri={datset_uri} -d prediction_feature={feature_uri} -d min_frequency={min_frequency} http://webservices.in-silico.ch/algorithm/fminer/bbrc -- cgit v1.2.3 From 71b876dd2a039e3363806549c2c039055f01274d Mon Sep 17 00:00:00 2001 From: Andreas Maunz Date: Mon, 21 Mar 2011 09:42:19 -0700 Subject: Nicer layout --- README.md | 38 +++++++++++++++++++++----------------- 1 file changed, 21 insertions(+), 17 deletions(-) diff --git a/README.md b/README.md index 0516921..79516a2 100644 --- a/README.md +++ b/README.md @@ -9,25 +9,25 @@ OpenTox Algorithm REST operations --------------- - Get a list of all algorithms GET / - URIs of algorithms 200 - Get a representation of the GET /fminer/ - fminer representation 200,404 + Get a list of all algorithms GET / - URIs of algorithms 200 + Get a representation of the GET /fminer/ - fminer representation 200,404 fminer algorithms - Get a representation of the GET /fminer/bbrc - bbrc representation 200,404 + Get a representation of the GET /fminer/bbrc - bbrc representation 200,404 bbrc algorithm - Get a representation of the GET /fminer/last - last representation 200,404 + Get a representation of the GET /fminer/last - last representation 200,404 last algorithm - Get a representation of the GET /lazar - lazar representation 200,404 + Get a representation of the GET /lazar - lazar representation 200,404 lazar algorithm - Create bbrc features POST /fminer/bbrc dataset_uri, URI for feature dataset 200,400,404,500 - feature_uri, - [min_frequency=5 per-mil], - [backbone] - Create last features POST /fminer/last dataset_uri, URI for feature dataset 200,400,404,500 - feature_uri, - [min_frequency=8 %], - Create lazar model POST /lazar dataset_uri, URI for lazar model 200,400,404,500 - prediction_feature, - feature_generation_uri + Create bbrc features POST /fminer/bbrc dataset_uri, URI for feature dataset 200,400,404,500 + feature_uri, + [min_frequency=5 per-mil], + [backbone=true] + Create last features POST /fminer/last dataset_uri, URI for feature dataset 200,400,404,500 + feature_uri, + [min_frequency=8 %], + Create lazar model POST /lazar dataset_uri, URI for lazar model 200,400,404,500 + prediction_feature, + feature_generation_uri Supported MIME formats ---------------------- @@ -46,6 +46,10 @@ Examples curl http://webservices.in-silico.ch/algorithm/lazar +* * * + +The following creates datasets with backbone refinement class representatives or latent structure patterns, using supervised graph mining, see http://cs.maunz.de. These features can be used e.g. as structural alerts, as descriptors (fingerprints) for prediction models or for similarity calculations. + ### Create the full set of frequent and significant subtrees curl -X POST -d dataset_uri={datset_uri} -d prediction_feature={feature_uri} -d min_frequency={min_frequency} -d "backbone=false" http://webservices.in-silico.ch/algorithm/fminer/bbrc @@ -59,13 +63,13 @@ backbone=false reduces BBRC mining to frequent and correlated subtree mining (mu feature_uri specifies the dependent variable from the dataset. -### Create [LAST-PM](http://last-pm.maunz.de) features +### Create [LAST-PM](http://last-pm.maunz.de) descriptors curl -X POST -d dataset_uri={datset_uri} -d prediction_feature={feature_uri} -d min_frequency={min_frequency} http://webservices.in-silico.ch/algorithm/fminer/last feature_uri specifies the dependent variable from the dataset. -Creates a dataset with fminer features (backbone refinement class representatives from supervised graph mining, see http://www.maunz.de/libfminer-doc/). These features can be used e.g. as structural alerts, as descriptors (fingerprints) for prediction models or for similarity calculations. +* * * ### Create lazar model -- cgit v1.2.3 From cfee4647362a39924395a905c281733492826dab Mon Sep 17 00:00:00 2001 From: Andreas Maunz Date: Mon, 21 Mar 2011 09:47:54 -0700 Subject: Hinting to guidance --- README.md | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 79516a2..c9f4fc6 100644 --- a/README.md +++ b/README.md @@ -57,17 +57,19 @@ The following creates datasets with backbone refinement class representatives or feature_uri specifies the dependent variable from the dataset. backbone=false reduces BBRC mining to frequent and correlated subtree mining (much more descriptors are produced). -### Create [BBRC](http://bbrc.maunz.de) features +### Create [BBRC](http://bbrc.maunz.de) features, recommended for large and very large datasets. curl -X POST -d dataset_uri={datset_uri} -d prediction_feature={feature_uri} -d min_frequency={min_frequency} http://webservices.in-silico.ch/algorithm/fminer/bbrc -feature_uri specifies the dependent variable from the dataset. +feature_uri specifies the dependent variable from the dataset. +Please click [here](http://bbrc.maunz.de#usage) for more guidance on usage. -### Create [LAST-PM](http://last-pm.maunz.de) descriptors +### Create [LAST-PM](http://last-pm.maunz.de) descriptors, recommended for small to medium-sized datasets. curl -X POST -d dataset_uri={datset_uri} -d prediction_feature={feature_uri} -d min_frequency={min_frequency} http://webservices.in-silico.ch/algorithm/fminer/last -feature_uri specifies the dependent variable from the dataset. +feature_uri specifies the dependent variable from the dataset. +Please click [here](http://last.maunz.de#usage) for guidance for more guidance on usage. * * * -- cgit v1.2.3 From 7a622f01d9b965adb6fe280c716db3621709083a Mon Sep 17 00:00:00 2001 From: Andreas Maunz Date: Mon, 21 Mar 2011 09:48:54 -0700 Subject: Fixed broken link to LAST-PM guidance --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index c9f4fc6..f5679fa 100644 --- a/README.md +++ b/README.md @@ -69,7 +69,7 @@ Please click [here](http://bbrc.maunz.de#usage) for more guidance on usage. curl -X POST -d dataset_uri={datset_uri} -d prediction_feature={feature_uri} -d min_frequency={min_frequency} http://webservices.in-silico.ch/algorithm/fminer/last feature_uri specifies the dependent variable from the dataset. -Please click [here](http://last.maunz.de#usage) for guidance for more guidance on usage. +Please click [here](http://last-pm.maunz.de#usage) for guidance for more guidance on usage. * * * -- cgit v1.2.3