OpenTox Algorithm
=================

* An OpenTox REST Webservice (http://www.opentox.org)
* Implements the OpenTox algorithm API for
  - fminer
  - lazar

REST operations:

Get a list of all algorithms  GET   /       -                       URIs of algorithms        200
Get a representation of the   GET   /fminer -                       fminer representation     200,404
fminer algorithm  
Get a representation of the   GET   /lazar  -                       lazar representation      200,404
lazar algorithm   
Create fminer features        POST  /fminer dataset_uri,            URI for feature dataset   200,400,404,500
                                            feature_uri   
Create lazar model            POST  /lazar  dataset_uri,            URI for lazar model       200,400,404,500
                                            prediction_feature, 
                                            feature_generation_uri  

Supported MIME formats (http://chemical-mime.sourceforge.net/):

  * application/rdf+xml (default): read/write OWL-DL

Examples:

Get the OWL-DL representation of fminer 
  curl http://webservices.in-silico.ch/algorithm/fminer

Get the OWL-DL representation of lazar 
  curl http://webservices.in-silico.ch/algorithm/lazar

Create fminer features
  curl -X POST -d dataset_uri={datset_uri} -d prediction_feature={feature_uri} http://webservices.in-silico.ch/algorithm/fminer
  (feaure_uri specifies the dependent variable, e.g. http://www.epa.gov/NCCT/dsstox/CentralFieldDef.html#ActivityOutcome_CPDBAS_Hamster)

  Creates a dataset with fminer features (backbone refinement class representatives from supervised graph mining, see http://www.maunz.de/libfminer-doc/). These features can be used e.g. as structural alerts, as descriptors (fingerprints) for prediction models or for similarity calculations.

Create lazar model
  curl -X POST -d dataset_uri={datset_uri} -d prediction_feature={feature_uri} -d feature_generation_uri=http://webservices.in-silico.ch/algorithm/fminer http://webservices.in-silico.ch/test/algorithm/lazar
  (feaure_uri specifies the dependent variable, e.g. http://www.epa.gov/NCCT/dsstox/CentralFieldDef.html#ActivityOutcome_CPDBAS_Hamster)

More documentation: Source code (application.rb, fminer.rb, lazar.rb)

Copyright (c) 2009 Christoph Helma. See LICENSE for details.