# cuts a classification dataset into balanced pieces # let inact_act_ratio := majority_class.size/minority_class.size # then: nr pieces = ceil(inact_act_ratio) if inact_act_ratio > 1.5 # each piece contains the complete minority class and ceil(inact_act_ratio) majority class compounds. class Balancer attr_accessor :inact_act_ratio, :act_hash, :inact_hash, :majority_splits, :nr_majority_splits, :errors, :datasets # Supply a OpenTox::Dataset here # Calculates inact_act_ratio, iff inact_act_ratio != +/-Infinity and no regression dataset is given def initialize(dataset, feature_uri, creator_url) @act_arr = [] @inact_arr = [] @inact_act_ratio = 1.0/0 # trick to define +infinity @nr_majority_splits = 1 # +/-1 means: no split @split = [] # splitted arrays with ids @datasets = [] # result datasets @errors = [] classification = true if dataset.features.include?(feature_uri) dataset.data.each do |i,a| inchi = i acts = a acts.each do |act| value = act[feature_uri] if OpenTox::Utils.is_true?(value) @act_arr << inchi elsif OpenTox::Utils.classification?(value) @inact_arr << inchi else classification = false break; end end end @inact_act_ratio = @inact_arr.size.to_f / @act_arr.size.to_f unless (@act_arr.size == 0 or !classification) # leave alone for regression set_nr_majority_splits # perform majority split @split = @nr_majority_splits > 0 ? shuffle_split(@inact_arr) : shuffle_split(@act_arr) unless @nr_majority_splits.abs == 1 @split.each do |s| new_c = @nr_majority_splits > 0 ? s.concat(@act_arr) : s.concat(@inac_arr) @datasets << dataset.create_new_dataset(new_c, [feature_uri], dataset.title, creator_url) end else errors << "Feature not present in dataset." end errors << "Can not split regression dataset." unless classification end # sets nr of splits for majority class ('+', if inact_cnt > act_cnt, or '-' else), or leaves unchanged for illegal values. def set_nr_majority_splits @nr_majority_splits = @inact_act_ratio >= 1.5 ? @inact_act_ratio.ceil : ( @inact_act_ratio <= (2.0/3.0) ? -(1.0/@inact_act_ratio).ceil : ( @inact_act_ratio>1.0 ? 1 : -1) ) unless OpenTox::Utils.infinity?(@inact_act_ratio) # leave alone for regression end # does the actual shuffle and split def shuffle_split (arr) arr = arr.shuffle arr.chunk(@nr_majority_splits.abs) end # turns a hash into a 2 col csv def hsh2csv (hsh) res="" hsh.each do |k,v| arr = [v,(@nr_majority_splits > 0 ? 0 : 1)] res += arr.join(", ") + "\n" end res end end class Array # cuts an array into chunks - returns a two-dimensional array def chunk(pieces) q, r = length.divmod(pieces) (0..pieces).map { |i| i * q + [r, i].min }.enum_cons(2) \ .map { |a, b| slice(a...b) } end # shuffles the elements of an array def shuffle( seed=nil ) srand seed.to_i if seed sort_by { Kernel.rand } end # shuffels self def shuffle!( seed=nil ) self.replace shuffle( seed ) end end