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|
#!/bin/sh
#
# Installs Opentox Webservices.
# Author: Christoph Helma, Andreas Maunz.
#
OT_PREFIX="$HOME/opentox-ruby"
RUBY_VER="1.9.3-p125"
RUBY_DWL="http://ftp.ruby-lang.org/pub/ruby/1.9"
FMINER_BRANCH="development"
if [ "$(id -u)" = "0" ]; then
echo "This script must be run as non-root." 1>&2
exit 1
fi
# Enforce main directory
DIR=`pwd`
if echo $DIR | grep "algorithm/bin" >/dev/null 2>&1 ; then cd ..; fi
# Ruby
. $HOME/.opentox/opentox-ui.sh
utils="git rbenv curl"
for u in $utils; do
eval `echo $u | tr "[:lower:]" "[:upper:]"`=`which $u` || (echo "'$u' missing. Install '$u' first." && exit 1)
done
LOG="$OT_PREFIX/tmp/`basename $0`.log"
echo
echo "Installation ('$LOG'):"
run_cmd ()
{
local cmd="$1"; local title="$2"
printf "%30s" "'$title'"
if ! eval $cmd >>$LOG 2>&1 ; then
printf "%50s\n" "FAIL"
echo "Last 10 lines of log:"
tail -10 "$LOG"
exit 1
fi
printf "%50s\n" "DONE"
}
install_ruby() {
local DIR=`pwd`
[ -d $DIR/tmp ] || mkdir -p $DIR/tmp && cd $DIR/tmp
([ -d $DIR/tmp/ruby-$RUBY_VER ] || $CURL $RUBY_DWL/ruby-$RUBY_VER.tar.gz 2>/dev/null | tar xz) && cd ruby-$RUBY_VER
cmd="./configure --prefix=$HOME/.rbenv/versions/$RUBY_VER" && run_cmd "$cmd" "Configure"
cmd="make -j2" && run_cmd "$cmd" "Make"
cmd="make install" && run_cmd "$cmd" "Install"
$RBENV rehash
cd $DIR
}
[ "`$RBENV local`" = "$RUBY_VER" ] || install_ruby
$RBENV local $RUBY_VER
# fminer etc
eval RUBY_INC="-I`dirname $HOME/.rbenv/versions/$RUBY_VER/include/ruby*/*linux/ruby`\ -I`dirname $HOME/.rbenv/versions/$RUBY_VER/include/ruby*/ruby`"
eval OPBB_INC="-I`dirname $OT_PREFIX/openbabel*/include/openbabel*/openbabel`"
cmd="$GIT submodule init" && run_cmd "$cmd" "Fminer Init"
cmd="$GIT submodule update" && run_cmd "$cmd" "Fminer Update"
cd "libfminer/libbbrc">>$LOG 2>&1
$GIT checkout $FMINER_BRANCH>>$LOG 2>&1
$GIT pull >>$LOG 2>&1
cd - >>$LOG 2>&1
cd "libfminer/liblast">>$LOG 2>&1
$GIT checkout $FMINER_BRANCH>>$LOG 2>&1
$GIT pull >>$LOG 2>&1
cd - >>$LOG 2>&1
for mylib in bbrc last; do
cmd="sed -i 's,^INCLUDE_OB.*,INCLUDE_OB\ =\ $OPBB_INC,g' `pwd`/libfminer/lib$mylib/Makefile" && run_cmd "$cmd" "Makefile $mylib (OB)"
cmd="sed -i 's,^INCLUDE_RB.*,INCLUDE_RB\ =\ $RUBY_INC,g' `pwd`/libfminer/lib$mylib/Makefile" && run_cmd "$cmd" "Makefile $mylib (RB)"
done
cd "libfminer/libbbrc">>$LOG 2>&1
cmd="make ruby" && run_cmd "$cmd" "Make BBRC"
cd - >>$LOG 2>&1
cd "libfminer/liblast">>$LOG 2>&1
cmd="make ruby" && run_cmd "$cmd" "Make LAST"
cd - >>$LOG 2>&1
cd "last-utils">>$LOG 2>&1
$GIT checkout $FMINER_BRANCH>>$LOG 2>&1
$GIT pull >>$LOG 2>&1
cd "$DIR"
|
