blob: 41b81b7d128681d14ea03f17e105164fa2e92c01 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
|
#!/bin/sh
# Install Fminer
# Author: Andreas Maunz
[ "`id -u`" = "0" ] && echo "This script must be run as non-root." 1>&2 && exit 1
# check wd is root of service
DIR=`pwd`
if echo $DIR | grep "algorithm/bin" >/dev/null 2>&1 ; then cd ..; fi
# load base config, helper funs, environment
OT_CONFIG_DIR="$HOME/.opentox"
! [ -f "$OT_CONFIG_DIR/config/install/config.sh" ] && echo "config.sh not found." 1>&2 && exit 1 || . $OT_CONFIG_DIR/config/install/config.sh
! [ -f "$OT_PREFIX/install/utils.sh" ] && echo "utils.sh not found." 1>&2 && exit 1 || . $OT_PREFIX/install/utils.sh
! [ -f $OT_CONFIG_DIR/opentox-ui.sh ] && echo "opentox-ui.sh not found." 1>&2 && exit 1 || . $OT_CONFIG_DIR/opentox-ui.sh
if [ -z "$LOG" ]; then
LOG="$OT_PREFIX/tmp/`basename $0`.log"
echo
echo "Installation ('$LOG'):"
echo
fi
check_utils "git make sed"
printf "\n%50s\n" "FMINER"
DIR=`pwd`
eval RUBY_INC="-I`dirname $RUBY_DIR/include/ruby*/*linux/ruby`\ -I`dirname $RUBY_DIR/include/ruby*/ruby`"
OPBB_INC="-I$RUBY_DIR/lib/ruby/gems/${RUBY_NUM_VER%-*}/gems/openbabel-2.3.2.1/include/openbabel-2.0"
OPBB_LIB="-L$RUBY_DIR/lib/ruby/gems/${RUBY_NUM_VER%-*}/gems/openbabel-2.3.2.1/lib"
cmd="$GIT submodule init" && run_cmd "$cmd" "Fminer Init"
cmd="$GIT submodule update" && run_cmd "$cmd" "Fminer Update"
cd "libfminer/libbbrc">>$LOG 2>&1
$GIT checkout $FMINER_BRANCH>>$LOG 2>&1
$GIT pull >>$LOG 2>&1
cd - >>$LOG 2>&1
cd "libfminer/liblast">>$LOG 2>&1
$GIT checkout $FMINER_BRANCH>>$LOG 2>&1
$GIT pull >>$LOG 2>&1
cd - >>$LOG 2>&1
for mylib in bbrc last; do
cmd="$SED -i 's,^INCLUDE_OB.*,INCLUDE_OB\ =\ $OPBB_INC,g' `pwd`/libfminer/lib$mylib/Makefile" && run_cmd "$cmd" "Makefile $mylib (OB)"
cmd="$SED -i 's,^LDFLAGS_OB.*,LDFLAGS_OB\ =\ $OPBB_LIB,g' `pwd`/libfminer/lib$mylib/Makefile" && run_cmd "$cmd" "Makefile $mylib (OB)"
cmd="$SED -i 's,^INCLUDE_RB.*,INCLUDE_RB\ =\ $RUBY_INC,g' `pwd`/libfminer/lib$mylib/Makefile" && run_cmd "$cmd" "Makefile $mylib (RB)"
done
cd "libfminer/libbbrc">>$LOG 2>&1
cmd="$MAKE ruby" && run_cmd "$cmd" "Make BBRC"
cd - >>$LOG 2>&1
cd "libfminer/liblast">>$LOG 2>&1
cmd="$MAKE ruby" && run_cmd "$cmd" "Make LAST"
cd - >>$LOG 2>&1
cd "last-utils">>$LOG 2>&1
$GIT checkout $OT_BRANCH>>$LOG 2>&1
$GIT pull >>$LOG 2>&1
cd $DIR
|
