ofs | hex dump | ascii |
---|
0000 | ca fe ba be 00 00 00 31 01 79 0a 00 79 00 90 07 00 91 0a 00 02 00 92 09 00 05 00 93 07 00 94 0a | .......1.y..y................... |
0020 | 00 05 00 90 0a 00 05 00 95 0a 00 96 00 97 0a 00 98 00 99 08 00 9a 0a 00 98 00 9b 0a 00 05 00 9c | ................................ |
0040 | 0a 00 05 00 9d 08 00 9e 0a 00 05 00 9f 0a 00 98 00 a0 0a 00 a1 00 a2 0a 00 a1 00 a3 09 00 05 00 | ................................ |
0060 | a4 07 00 a5 0a 00 14 00 90 08 00 a6 0a 00 14 00 a7 08 00 a8 0a 00 14 00 a0 0a 00 a9 00 aa 07 00 | ................................ |
0080 | ab 0a 00 1b 00 ac 07 00 ad 0a 00 1d 00 ae 07 00 af 0a 00 1f 00 b0 07 00 b1 0a 00 21 00 b2 0a 00 | ...........................!.... |
00a0 | 1d 00 b3 07 00 b4 0a 00 24 00 b0 08 00 b5 0a 00 05 00 b6 08 00 b7 0b 00 b8 00 b9 08 00 ba 0b 00 | ........$....................... |
00c0 | b8 00 bb 0a 00 02 00 90 0a 00 79 00 bc 0a 00 bd 00 be 08 00 bf 0a 00 02 00 c0 08 00 c1 08 00 c2 | ..........y..................... |
00e0 | 08 00 c3 0a 00 02 00 a0 09 00 96 00 c4 0a 00 c5 00 9f 0b 00 b8 00 c6 0b 00 c7 00 c8 0b 00 c7 00 | ................................ |
0100 | c9 08 00 ca 0b 00 cb 00 cc 0a 00 14 00 cd 0a 00 05 00 ce 08 00 cf 0b 00 cb 00 d0 08 00 d1 0a 00 | ................................ |
0120 | d2 00 d3 0a 00 d2 00 d4 08 00 d5 0a 00 d6 00 d7 0a 00 d8 00 d9 08 00 da 0a 00 14 00 db 08 00 dc | ................................ |
0140 | 0b 00 cb 00 dd 0a 00 14 00 de 08 00 df 0a 00 e0 00 e1 08 00 e2 0a 00 e3 00 e4 08 00 e5 0b 00 cb | ................................ |
0160 | 00 e6 08 00 e7 0a 00 e8 00 e9 0a 00 14 00 ea 08 00 eb 0b 00 cb 00 ec 08 00 ed 0a 00 d2 00 ee 08 | ................................ |
0180 | 00 ef 0a 00 f0 00 e1 08 00 f1 0a 00 f2 00 f3 08 00 f4 0b 00 cb 00 f5 0b 00 cb 00 f6 0b 00 f7 00 | ................................ |
01a0 | c8 0b 00 f7 00 f8 08 00 f9 08 00 fa 08 00 fb 0b 00 f7 00 fc 0b 00 fd 00 fe 0b 00 b8 00 ff 0b 00 | ................................ |
01c0 | b8 01 00 08 01 01 08 01 02 0b 00 fd 01 03 08 01 04 0b 00 fd 01 05 08 01 06 0a 01 07 01 08 08 01 | ................................ |
01e0 | 09 08 01 0a 08 01 0b 08 01 0c 08 01 0d 08 01 0e 0a 01 0f 01 10 0a 00 79 00 a0 08 01 11 0a 00 a9 | .......................y........ |
0200 | 01 12 07 01 13 01 00 06 6c 6f 67 67 65 72 01 00 1b 4c 6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 | ........logger...Lorg/apache/log |
0220 | 34 6a 2f 43 61 74 65 67 6f 72 79 3b 01 00 0f 53 48 4f 57 5f 41 54 4f 4d 5f 49 4e 46 4f 53 01 00 | 4j/Category;...SHOW_ATOM_INFOS.. |
0240 | 01 5a 01 00 0d 43 6f 6e 73 74 61 6e 74 56 61 6c 75 65 03 00 00 00 01 01 00 06 62 75 66 66 65 72 | .Z...ConstantValue........buffer |
0260 | 01 00 18 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 66 66 65 72 3b 01 00 06 3c 69 | ...Ljava/lang/StringBuffer;...<i |
0280 | 6e 69 74 3e 01 00 03 28 29 56 01 00 04 43 6f 64 65 01 00 04 6d 61 69 6e 01 00 16 28 5b 4c 6a 61 | nit>...()V...Code...main...([Lja |
02a0 | 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 56 01 00 04 74 65 73 74 01 00 45 28 4c 6a 61 76 | va/lang/String;)V...test..E(Ljav |
02c0 | 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 | a/lang/String;Ljoelib2/io/BasicI |
02e0 | 4f 54 79 70 65 3b 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 65 3b 29 56 | OType;Ljoelib2/io/BasicIOType;)V |
0300 | 01 00 05 75 73 61 67 65 01 00 05 70 72 69 6e 74 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 | ...usage...print...(Ljava/lang/S |
0320 | 74 72 69 6e 67 3b 29 56 01 00 0c 70 72 69 6e 74 32 73 74 64 6f 75 74 01 00 07 70 72 69 6e 74 6c | tring;)V...print2stdout...printl |
0340 | 6e 01 00 1e 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b | n...(Ljoelib2/molecule/Molecule; |
0360 | 29 56 01 00 08 3c 63 6c 69 6e 69 74 3e 0c 00 82 00 83 01 00 16 6a 61 76 61 2f 6c 61 6e 67 2f 53 | )V...<clinit>........java/lang/S |
0380 | 74 72 69 6e 67 42 75 66 66 65 72 0c 00 82 01 14 0c 00 80 00 81 01 00 1f 6a 6f 65 6c 69 62 32 2f | tringBuffer.............joelib2/ |
03a0 | 65 78 61 6d 70 6c 65 2f 4d 6f 6c 65 63 75 6c 65 45 78 61 6d 70 6c 65 0c 00 89 00 83 07 01 15 0c | example/MoleculeExample......... |
03c0 | 01 16 01 14 07 01 17 0c 01 18 01 19 01 00 03 53 44 46 0c 01 1a 01 1b 0c 00 87 00 88 0c 00 8c 00 | ...............SDF.............. |
03e0 | 83 01 00 19 53 75 70 70 6f 72 74 65 64 20 6d 6f 6c 65 63 75 6c 65 20 74 79 70 65 73 3a 0c 00 8d | ....Supported.molecule.types:... |
0400 | 00 8b 0c 01 1c 01 1d 07 01 1e 0c 01 18 01 1f 0c 01 20 01 21 0c 00 7a 00 7b 01 00 17 6a 61 76 61 | ...................!..z.{...java |
0420 | 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 01 00 1d 4d 6f 6c 65 63 75 6c 65 20 63 | /lang/StringBuilder...Molecule.c |
0440 | 61 6e 27 74 20 62 65 20 6c 6f 61 64 65 64 20 61 74 20 22 0c 01 22 01 23 01 00 02 22 2e 07 01 24 | an't.be.loaded.at."..".#..."...$ |
0460 | 0c 01 25 01 26 01 00 1c 6a 61 76 61 2f 69 6f 2f 42 79 74 65 41 72 72 61 79 49 6e 70 75 74 53 74 | ..%.&...java/io/ByteArrayInputSt |
0480 | 72 65 61 6d 0c 00 82 01 27 01 00 16 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 52 65 61 64 | ream....'...joelib2/io/BasicRead |
04a0 | 65 72 0c 00 82 01 28 01 00 13 6a 61 76 61 2f 69 6f 2f 49 4f 45 78 63 65 70 74 69 6f 6e 0c 01 29 | er....(...java/io/IOException..) |
04c0 | 00 83 01 00 27 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 42 61 73 69 63 43 6f 6e 66 6f | ....'joelib2/molecule/BasicConfo |
04e0 | 72 6d 65 72 4d 6f 6c 65 63 75 6c 65 0c 00 82 01 2a 0c 01 2b 01 2c 01 00 13 6a 61 76 61 2f 6c 61 | rmerMolecule....*..+.,...java/la |
0500 | 6e 67 2f 45 78 63 65 70 74 69 6f 6e 01 00 12 4f 72 69 67 69 6e 61 6c 20 6d 6f 6c 65 63 75 6c 65 | ng/Exception...Original.molecule |
0520 | 3a 0c 00 8d 00 8e 01 00 0c 41 64 64 20 48 20 61 74 6f 6d 73 3a 07 01 2d 0c 01 2e 01 2f 01 00 0f | :........Add.H.atoms:..-..../... |
0540 | 44 65 6c 65 74 65 20 48 20 61 74 6f 6d 73 3a 0c 01 30 01 31 0c 01 32 01 33 07 01 34 0c 01 35 01 | Delete.H.atoms:..0.1..2.3..4..5. |
0560 | 1d 01 00 0b 55 73 61 67 65 20 69 73 20 3a 20 0c 01 22 01 36 01 00 0b 6a 61 76 61 20 2d 63 70 20 | ....Usage.is.:...".6...java.-cp. |
0580 | 2e 20 01 00 0b 20 3c 53 44 46 20 66 69 6c 65 3e 01 00 43 0a 0a 54 68 69 73 20 69 73 20 76 65 72 | ......<SDF.file>..C..This.is.ver |
05a0 | 73 69 6f 6e 20 24 52 65 76 69 73 69 6f 6e 3a 20 31 2e 31 34 20 24 20 28 24 44 61 74 65 3a 20 32 | sion.$Revision:.1.14.$.($Date:.2 |
05c0 | 30 30 35 2f 30 32 2f 31 37 20 31 36 3a 34 38 3a 32 39 20 24 29 0a 0c 01 37 01 38 07 01 39 0c 01 | 005/02/17.16:48:29.$)...7.8..9.. |
05e0 | 3a 01 3b 07 01 3c 0c 01 3d 01 31 0c 01 3e 01 3f 01 00 09 61 74 6f 6d 20 69 64 78 3a 07 01 40 0c | :.;..<..=.1..>.?...atom.idx:..@. |
0600 | 01 41 01 42 0c 01 22 01 43 0c 00 8a 00 8b 01 00 10 2c 20 61 74 6f 6d 69 63 20 6e 75 6d 62 65 72 | .A.B..".C........,.atomic.number |
0620 | 3a 0c 01 44 01 42 01 00 11 2c 20 65 6c 65 6d 65 6e 74 20 73 79 6d 62 6f 6c 3a 07 01 45 0c 01 18 | :..D.B...,.element.symbol:..E... |
0640 | 01 46 0c 01 47 01 48 01 00 15 2c 20 69 6e 74 65 72 6e 61 6c 20 61 74 6f 6d 20 74 79 70 65 3a 07 | .F..G.H...,.internal.atom.type:. |
0660 | 01 49 0c 01 4a 01 4b 07 01 4c 0c 01 4d 01 4e 01 00 10 2c 20 61 72 6f 6d 61 74 69 63 20 66 6c 61 | .I..J.K..L..M.N...,.aromatic.fla |
0680 | 67 3a 0c 01 22 01 4f 01 00 0e 2c 20 61 74 6f 6d 20 76 65 63 74 6f 72 3a 0c 01 50 01 51 0c 01 22 | g:..".O...,.atom.vector:..P.Q.." |
06a0 | 01 52 01 00 10 2c 20 68 79 62 72 69 64 69 73 61 74 69 6f 6e 3a 07 01 53 0c 01 54 01 55 01 00 13 | .R...,.hybridisation:..S..T.U... |
06c0 | 2c 20 69 6d 70 6c 69 63 69 74 20 76 61 6c 65 6e 63 65 3a 07 01 56 0c 01 57 01 55 01 00 09 2c 20 | ,.implicit.valence:..V..W.U...,. |
06e0 | 63 68 61 72 67 65 3a 0c 01 58 01 42 01 00 11 2c 20 70 61 72 74 69 61 6c 20 63 68 61 72 67 65 3a | charge:..X.B...,.partial.charge: |
0700 | 07 01 59 0c 01 5a 01 5b 0c 01 22 01 5c 01 00 0a 2c 20 76 61 6c 65 6e 63 65 3a 0c 01 5d 01 42 01 | ..Y..Z.[..".\...,.valence:..].B. |
0720 | 00 10 2c 20 65 78 74 20 45 6c 65 63 74 72 6f 6e 73 3a 0c 01 5e 01 5f 01 00 12 2c 20 62 6f 6e 64 | ..,.ext.Electrons:..^._...,.bond |
0740 | 20 6f 72 64 65 72 20 73 75 6d 20 3a 07 01 60 01 00 1c 2c 20 70 61 75 6c 69 6e 67 20 65 6c 65 63 | .order.sum.:..`...,.pauling.elec |
0760 | 74 72 6f 6e 65 67 61 74 69 76 69 74 79 3a 07 01 61 0c 01 62 01 5b 01 00 11 2c 20 66 72 65 65 20 | tronegativity:..a..b.[...,.free. |
0780 | 65 6c 65 63 74 72 6f 6e 73 3a 0c 01 63 01 42 0c 01 64 01 65 07 01 66 0c 01 67 01 3f 01 00 08 20 | electrons:..c.B..d.e..f..g.?.... |
07a0 | 20 61 74 6f 6d 20 23 01 00 16 20 69 73 20 61 74 74 61 63 68 65 64 20 74 6f 20 61 74 6f 6d 20 23 | .atom.#....is.attached.to.atom.# |
07c0 | 01 00 14 20 77 69 74 68 20 62 6f 6e 64 20 6f 66 20 6f 72 64 65 72 20 0c 01 68 01 69 07 01 6a 0c | ....with.bond.of.order...h.i..j. |
07e0 | 01 6b 01 42 0c 01 6c 01 42 0c 01 6d 01 6e 01 00 05 42 6f 6e 64 20 01 00 08 20 28 62 65 67 69 6e | .k.B..l.B..m.n...Bond.....(begin |
0800 | 3d 0c 01 6f 01 42 01 00 05 2c 65 6e 64 3d 0c 01 70 01 42 01 00 05 29 20 69 73 20 07 01 71 0c 01 | =..o.B...,end=..p.B...).is...q.. |
0820 | 72 01 73 01 00 01 61 01 00 05 6e 6f 74 20 61 01 00 0d 20 63 6c 6f 73 75 72 65 20 62 6f 6e 64 01 | r.s...a...not.a....closure.bond. |
0840 | 00 0d 4d 6f 6c 65 63 75 6c 65 20 68 61 73 20 01 00 10 20 61 72 6f 6d 61 74 69 63 20 61 74 6f 6d | ..Molecule.has.....aromatic.atom |
0860 | 73 2e 01 00 10 4d 6f 6c 65 63 75 6c 65 20 77 65 69 67 68 74 3a 07 01 74 0c 01 75 01 76 01 00 01 | s....Molecule.weight:..t..u.v... |
0880 | 0a 0c 01 77 01 78 01 00 10 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 01 00 04 28 49 29 56 | ...w.x...java/lang/Object...(I)V |
08a0 | 01 00 10 6a 61 76 61 2f 6c 61 6e 67 2f 53 79 73 74 65 6d 01 00 04 65 78 69 74 01 00 1c 6a 6f 65 | ...java/lang/System...exit...joe |
08c0 | 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 65 48 6f 6c 64 65 72 01 00 08 69 6e 73 74 | lib2/io/BasicIOTypeHolder...inst |
08e0 | 61 6e 63 65 01 00 20 28 29 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 65 | ance...()Ljoelib2/io/BasicIOType |
0900 | 48 6f 6c 64 65 72 3b 01 00 09 67 65 74 49 4f 54 79 70 65 01 00 2c 28 4c 6a 61 76 61 2f 6c 61 6e | Holder;...getIOType..,(Ljava/lan |
0920 | 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 | g/String;)Ljoelib2/io/BasicIOTyp |
0940 | 65 3b 01 00 08 74 6f 53 74 72 69 6e 67 01 00 14 28 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 | e;...toString...()Ljava/lang/Str |
0960 | 69 6e 67 3b 01 00 1f 77 73 69 2f 72 61 2f 74 6f 6f 6c 2f 42 61 73 69 63 52 65 73 6f 75 72 63 65 | ing;...wsi/ra/tool/BasicResource |
0980 | 4c 6f 61 64 65 72 01 00 23 28 29 4c 77 73 69 2f 72 61 2f 74 6f 6f 6c 2f 42 61 73 69 63 52 65 73 | Loader..#()Lwsi/ra/tool/BasicRes |
09a0 | 6f 75 72 63 65 4c 6f 61 64 65 72 3b 01 00 1c 67 65 74 42 79 74 65 73 46 72 6f 6d 52 65 73 6f 75 | ourceLoader;...getBytesFromResou |
09c0 | 72 63 65 4c 6f 63 61 74 69 6f 6e 01 00 16 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 | rceLocation...(Ljava/lang/String |
09e0 | 3b 29 5b 42 01 00 06 61 70 70 65 6e 64 01 00 2d 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 | ;)[B...append..-(Ljava/lang/Stri |
0a00 | 6e 67 3b 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 3b 01 00 19 | ng;)Ljava/lang/StringBuilder;... |
0a20 | 6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 01 00 05 65 72 72 6f | org/apache/log4j/Category...erro |
0a40 | 72 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 29 56 01 00 05 28 5b 42 29 | r...(Ljava/lang/Object;)V...([B) |
0a60 | 56 01 00 2b 28 4c 6a 61 76 61 2f 69 6f 2f 49 6e 70 75 74 53 74 72 65 61 6d 3b 4c 6a 6f 65 6c 69 | V..+(Ljava/io/InputStream;Ljoeli |
0a80 | 62 32 2f 69 6f 2f 49 4f 54 79 70 65 3b 29 56 01 00 0f 70 72 69 6e 74 53 74 61 63 6b 54 72 61 63 | b2/io/IOType;)V...printStackTrac |
0aa0 | 65 01 00 29 28 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 49 4f 54 79 70 65 3b 4c 6a 6f 65 6c 69 62 32 | e..)(Ljoelib2/io/IOType;Ljoelib2 |
0ac0 | 2f 69 6f 2f 49 4f 54 79 70 65 3b 29 56 01 00 08 72 65 61 64 4e 65 78 74 01 00 1e 28 4c 6a 6f 65 | /io/IOType;)V...readNext...(Ljoe |
0ae0 | 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 29 5a 01 00 19 6a 6f 65 6c | lib2/molecule/Molecule;)Z...joel |
0b00 | 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 01 00 0c 61 64 64 48 79 64 72 6f | ib2/molecule/Molecule...addHydro |
0b20 | 67 65 6e 73 01 00 06 28 5a 5a 5a 29 5a 01 00 0f 64 65 6c 65 74 65 48 79 64 72 6f 67 65 6e 73 01 | gens...(ZZZ)Z...deleteHydrogens. |
0b40 | 00 03 28 29 5a 01 00 08 67 65 74 43 6c 61 73 73 01 00 13 28 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f | ..()Z...getClass...()Ljava/lang/ |
0b60 | 43 6c 61 73 73 3b 01 00 0f 6a 61 76 61 2f 6c 61 6e 67 2f 43 6c 61 73 73 01 00 07 67 65 74 4e 61 | Class;...java/lang/Class...getNa |
0b80 | 6d 65 01 00 2c 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 61 76 61 2f 6c | me..,(Ljava/lang/String;)Ljava/l |
0ba0 | 61 6e 67 2f 53 74 72 69 6e 67 42 75 66 66 65 72 3b 01 00 03 6f 75 74 01 00 15 4c 6a 61 76 61 2f | ang/StringBuffer;...out...Ljava/ |
0bc0 | 69 6f 2f 50 72 69 6e 74 53 74 72 65 61 6d 3b 01 00 13 6a 61 76 61 2f 69 6f 2f 50 72 69 6e 74 53 | io/PrintStream;...java/io/PrintS |
0be0 | 74 72 65 61 6d 01 00 0c 61 74 6f 6d 49 74 65 72 61 74 6f 72 01 00 26 28 29 4c 6a 6f 65 6c 69 62 | tream...atomIterator..&()Ljoelib |
0c00 | 32 2f 75 74 69 6c 2f 69 74 65 72 61 74 6f 72 2f 41 74 6f 6d 49 74 65 72 61 74 6f 72 3b 01 00 22 | 2/util/iterator/AtomIterator;.." |
0c20 | 6a 6f 65 6c 69 62 32 2f 75 74 69 6c 2f 69 74 65 72 61 74 6f 72 2f 41 74 6f 6d 49 74 65 72 61 74 | joelib2/util/iterator/AtomIterat |
0c40 | 6f 72 01 00 07 68 61 73 4e 65 78 74 01 00 08 6e 65 78 74 41 74 6f 6d 01 00 19 28 29 4c 6a 6f 65 | or...hasNext...nextAtom...()Ljoe |
0c60 | 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 41 74 6f 6d 3b 01 00 15 6a 6f 65 6c 69 62 32 2f 6d 6f | lib2/molecule/Atom;...joelib2/mo |
0c80 | 6c 65 63 75 6c 65 2f 41 74 6f 6d 01 00 08 67 65 74 49 6e 64 65 78 01 00 03 28 29 49 01 00 1c 28 | lecule/Atom...getIndex...()I...( |
0ca0 | 49 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 3b 01 00 0f 67 65 | I)Ljava/lang/StringBuilder;...ge |
0cc0 | 74 41 74 6f 6d 69 63 4e 75 6d 62 65 72 01 00 1f 6a 6f 65 6c 69 62 32 2f 64 61 74 61 2f 42 61 73 | tAtomicNumber...joelib2/data/Bas |
0ce0 | 69 63 45 6c 65 6d 65 6e 74 48 6f 6c 64 65 72 01 00 23 28 29 4c 6a 6f 65 6c 69 62 32 2f 64 61 74 | icElementHolder..#()Ljoelib2/dat |
0d00 | 61 2f 42 61 73 69 63 45 6c 65 6d 65 6e 74 48 6f 6c 64 65 72 3b 01 00 09 67 65 74 53 79 6d 62 6f | a/BasicElementHolder;...getSymbo |
0d20 | 6c 01 00 15 28 49 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 28 6a 6f 65 6c | l...(I)Ljava/lang/String;..(joel |
0d40 | 69 62 32 2f 66 65 61 74 75 72 65 2f 74 79 70 65 73 2f 61 74 6f 6d 6c 61 62 65 6c 2f 41 74 6f 6d | ib2/feature/types/atomlabel/Atom |
0d60 | 54 79 70 65 01 00 0b 67 65 74 41 74 6f 6d 54 79 70 65 01 00 2b 28 4c 6a 6f 65 6c 69 62 32 2f 6d | Type...getAtomType..+(Ljoelib2/m |
0d80 | 6f 6c 65 63 75 6c 65 2f 41 74 6f 6d 3b 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b | olecule/Atom;)Ljava/lang/String; |
0da0 | 01 00 34 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 74 79 70 65 73 2f 61 74 6f 6d 6c 61 62 | ..4joelib2/feature/types/atomlab |
0dc0 | 65 6c 2f 41 74 6f 6d 49 6e 41 72 6f 6d 61 74 69 63 53 79 73 74 65 6d 01 00 07 69 73 56 61 6c 75 | el/AtomInAromaticSystem...isValu |
0de0 | 65 01 00 1a 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 41 74 6f 6d 3b 29 5a 01 00 | e...(Ljoelib2/molecule/Atom;)Z.. |
0e00 | 1c 28 5a 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 3b 01 00 0b | .(Z)Ljava/lang/StringBuilder;... |
0e20 | 67 65 74 43 6f 6f 72 64 73 33 44 01 00 19 28 29 4c 6a 6f 65 6c 69 62 32 2f 6d 61 74 68 2f 56 65 | getCoords3D...()Ljoelib2/math/Ve |
0e40 | 63 74 6f 72 33 44 3b 01 00 2d 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 29 4c 6a | ctor3D;..-(Ljava/lang/Object;)Lj |
0e60 | 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 3b 01 00 31 6a 6f 65 6c 69 62 | ava/lang/StringBuilder;..1joelib |
0e80 | 32 2f 66 65 61 74 75 72 65 2f 74 79 70 65 73 2f 61 74 6f 6d 6c 61 62 65 6c 2f 41 74 6f 6d 48 79 | 2/feature/types/atomlabel/AtomHy |
0ea0 | 62 72 69 64 69 73 61 74 69 6f 6e 01 00 0b 67 65 74 49 6e 74 56 61 6c 75 65 01 00 1a 28 4c 6a 6f | bridisation...getIntValue...(Ljo |
0ec0 | 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 41 74 6f 6d 3b 29 49 01 00 33 6a 6f 65 6c 69 62 32 | elib2/molecule/Atom;)I..3joelib2 |
0ee0 | 2f 66 65 61 74 75 72 65 2f 74 79 70 65 73 2f 61 74 6f 6d 6c 61 62 65 6c 2f 41 74 6f 6d 49 6d 70 | /feature/types/atomlabel/AtomImp |
0f00 | 6c 69 63 69 74 56 61 6c 65 6e 63 65 01 00 12 67 65 74 49 6d 70 6c 69 63 69 74 56 61 6c 65 6e 63 | licitValence...getImplicitValenc |
0f20 | 65 01 00 0f 67 65 74 46 6f 72 6d 61 6c 43 68 61 72 67 65 01 00 31 6a 6f 65 6c 69 62 32 2f 66 65 | e...getFormalCharge..1joelib2/fe |
0f40 | 61 74 75 72 65 2f 74 79 70 65 73 2f 61 74 6f 6d 6c 61 62 65 6c 2f 41 74 6f 6d 50 61 72 74 69 61 | ature/types/atomlabel/AtomPartia |
0f60 | 6c 43 68 61 72 67 65 01 00 10 67 65 74 50 61 72 74 69 61 6c 43 68 61 72 67 65 01 00 1a 28 4c 6a | lCharge...getPartialCharge...(Lj |
0f80 | 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 41 74 6f 6d 3b 29 44 01 00 1c 28 44 29 4c 6a 61 | oelib2/molecule/Atom;)D...(D)Lja |
0fa0 | 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 3b 01 00 0a 67 65 74 56 61 6c 65 | va/lang/StringBuilder;...getVale |
0fc0 | 6e 63 65 01 00 14 67 65 74 45 78 74 65 72 69 6f 72 45 6c 65 63 74 72 6f 6e 73 01 00 04 28 49 29 | nce...getExteriorElectrons...(I) |
0fe0 | 49 01 00 30 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 74 79 70 65 73 2f 61 74 6f 6d 6c 61 | I..0joelib2/feature/types/atomla |
1000 | 62 65 6c 2f 41 74 6f 6d 42 6f 6e 64 4f 72 64 65 72 53 75 6d 01 00 2d 6a 6f 65 6c 69 62 32 2f 66 | bel/AtomBondOrderSum..-joelib2/f |
1020 | 65 61 74 75 72 65 2f 74 79 70 65 73 2f 61 74 6f 6d 6c 61 62 65 6c 2f 41 74 6f 6d 45 4e 50 61 75 | eature/types/atomlabel/AtomENPau |
1040 | 6c 69 6e 67 01 00 0e 67 65 74 44 6f 75 62 6c 65 56 61 6c 75 65 01 00 10 67 65 74 46 72 65 65 45 | ling...getDoubleValue...getFreeE |
1060 | 6c 65 63 74 72 6f 6e 73 01 00 0f 6e 62 72 41 74 6f 6d 49 74 65 72 61 74 6f 72 01 00 29 28 29 4c | lectrons...nbrAtomIterator..)()L |
1080 | 6a 6f 65 6c 69 62 32 2f 75 74 69 6c 2f 69 74 65 72 61 74 6f 72 2f 4e 62 72 41 74 6f 6d 49 74 65 | joelib2/util/iterator/NbrAtomIte |
10a0 | 72 61 74 6f 72 3b 01 00 25 6a 6f 65 6c 69 62 32 2f 75 74 69 6c 2f 69 74 65 72 61 74 6f 72 2f 4e | rator;..%joelib2/util/iterator/N |
10c0 | 62 72 41 74 6f 6d 49 74 65 72 61 74 6f 72 01 00 0b 6e 65 78 74 4e 62 72 41 74 6f 6d 01 00 0a 61 | brAtomIterator...nextNbrAtom...a |
10e0 | 63 74 75 61 6c 42 6f 6e 64 01 00 19 28 29 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f | ctualBond...()Ljoelib2/molecule/ |
1100 | 42 6f 6e 64 3b 01 00 15 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 42 6f 6e 64 01 00 0c | Bond;...joelib2/molecule/Bond... |
1120 | 67 65 74 42 6f 6e 64 4f 72 64 65 72 01 00 0c 67 65 74 42 6f 6e 64 73 53 69 7a 65 01 00 07 67 65 | getBondOrder...getBondsSize...ge |
1140 | 74 42 6f 6e 64 01 00 1a 28 49 29 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 42 6f 6e | tBond...(I)Ljoelib2/molecule/Bon |
1160 | 64 3b 01 00 0d 67 65 74 42 65 67 69 6e 49 6e 64 65 78 01 00 0b 67 65 74 45 6e 64 49 6e 64 65 78 | d;...getBeginIndex...getEndIndex |
1180 | 01 00 2d 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 74 79 70 65 73 2f 62 6f 6e 64 6c 61 62 | ..-joelib2/feature/types/bondlab |
11a0 | 65 6c 2f 42 6f 6e 64 49 73 43 6c 6f 73 75 72 65 01 00 09 69 73 43 6c 6f 73 75 72 65 01 00 1a 28 | el/BondIsClosure...isClosure...( |
11c0 | 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 42 6f 6e 64 3b 29 5a 01 00 25 6a 6f 65 6c | Ljoelib2/molecule/Bond;)Z..%joel |
11e0 | 69 62 32 2f 66 65 61 74 75 72 65 2f 74 79 70 65 73 2f 4d 6f 6c 65 63 75 6c 61 72 57 65 69 67 68 | ib2/feature/types/MolecularWeigh |
1200 | 74 01 00 12 67 65 74 4d 6f 6c 65 63 75 6c 61 72 57 65 69 67 68 74 01 00 1e 28 4c 6a 6f 65 6c 69 | t...getMolecularWeight...(Ljoeli |
1220 | 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 29 44 01 00 0b 67 65 74 49 6e 73 | b2/molecule/Molecule;)D...getIns |
1240 | 74 61 6e 63 65 01 00 2f 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6f 72 67 | tance../(Ljava/lang/String;)Lorg |
1260 | 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 3b 00 21 00 05 00 79 00 00 00 | /apache/log4j/Category;.!...y... |
1280 | 03 00 0a 00 7a 00 7b 00 00 00 1a 00 7c 00 7d 00 01 00 7e 00 00 00 02 00 7f 00 02 00 80 00 81 00 | ....z.{.....|.}...~............. |
12a0 | 00 00 09 00 01 00 82 00 83 00 01 00 84 00 00 00 1f 00 04 00 01 00 00 00 13 2a b7 00 01 2a bb 00 | .........................*...*.. |
12c0 | 02 59 11 27 10 b7 00 03 b5 00 04 b1 00 00 00 00 00 09 00 85 00 86 00 01 00 84 00 00 00 41 00 05 | .Y.'.........................A.. |
12e0 | 00 02 00 00 00 35 bb 00 05 59 b7 00 06 4c 2a be 04 9f 00 0e 2b b6 00 07 03 b8 00 08 a7 00 1a 2b | .....5...Y...L*.....+..........+ |
1300 | 2a 03 32 b8 00 09 12 0a b6 00 0b b8 00 09 12 0a b6 00 0b b6 00 0c 2b b7 00 0d b1 00 00 00 00 00 | *.2...................+......... |
1320 | 01 00 87 00 88 00 01 00 84 00 00 00 e5 00 04 00 09 00 00 00 c9 2a 12 0e b7 00 0f 2a b8 00 09 b6 | .....................*.....*.... |
1340 | 00 10 b7 00 0f b8 00 11 2b b6 00 12 3a 04 19 04 c7 00 25 b2 00 13 bb 00 14 59 b7 00 15 12 16 b6 | ........+...:.....%......Y...... |
1360 | 00 17 2b b6 00 17 12 18 b6 00 17 b6 00 19 b6 00 1a 04 b8 00 08 bb 00 1b 59 19 04 b7 00 1c 3a 05 | ..+.....................Y.....:. |
1380 | 01 3a 06 bb 00 1d 59 19 05 2c b7 00 1e 3a 06 a7 00 0e 3a 07 19 07 b6 00 20 04 b8 00 08 bb 00 21 | .:....Y..,...:....:............! |
13a0 | 59 2c 2d b7 00 22 3a 07 19 06 19 07 b6 00 23 9a 00 06 a7 00 4b a7 00 0e 3a 08 19 08 b6 00 25 04 | Y,-..":.......#.....K...:.....%. |
13c0 | b8 00 08 2a 12 26 b7 00 0f 2a 19 07 b7 00 27 2a 12 28 b7 00 0f 19 07 03 04 04 b9 00 29 04 00 57 | ...*.&...*....'*.(..........)..W |
13e0 | 2a 19 07 b7 00 27 2a 12 2a b7 00 0f 19 07 b9 00 2b 01 00 57 2a 19 07 b7 00 27 a7 ff ae b1 00 02 | *....'*.*.......+..W*....'...... |
1400 | 00 4e 00 5a 00 5d 00 1f 00 73 00 7d 00 83 00 24 00 00 00 01 00 89 00 83 00 01 00 84 00 00 00 4b | .N.Z.]...s.}...$...............K |
1420 | 00 02 00 03 00 00 00 3f bb 00 02 59 b7 00 2c 4c 2a b6 00 2d b6 00 2e 4d 2b 12 2f b6 00 30 57 2b | .......?...Y..,L*..-...M+./..0W+ |
1440 | 12 31 b6 00 30 57 2b 2c b6 00 30 57 2b 12 32 b6 00 30 57 2b 12 33 b6 00 30 57 2a 2b b6 00 34 b7 | .1..0W+,..0W+.2..0W+.3..0W*+..4. |
1460 | 00 0f 03 b8 00 08 b1 00 00 00 00 00 02 00 8a 00 8b 00 01 00 84 00 00 00 16 00 02 00 02 00 00 00 | ................................ |
1480 | 0a 2a b4 00 04 2b b6 00 30 57 b1 00 00 00 00 00 02 00 8c 00 83 00 01 00 84 00 00 00 1a 00 02 00 | .*...+..0W...................... |
14a0 | 01 00 00 00 0e b2 00 35 2a b4 00 04 b6 00 34 b6 00 36 b1 00 00 00 00 00 02 00 8d 00 8e 00 01 00 | .......5*.....4..6.............. |
14c0 | 84 00 00 02 e0 00 04 00 09 00 00 02 d4 2b b9 00 37 01 00 3a 04 03 36 06 19 04 b9 00 38 01 00 99 | .............+..7..:..6.....8... |
14e0 | 02 12 19 04 b9 00 39 01 00 4d 2a bb 00 14 59 b7 00 15 12 3a b6 00 17 2c b9 00 3b 01 00 b6 00 3c | ......9..M*...Y....:...,..;....< |
1500 | b6 00 19 b7 00 3d 2a bb 00 14 59 b7 00 15 12 3e b6 00 17 2c b9 00 3f 01 00 b6 00 3c b6 00 19 b7 | .....=*...Y....>...,..?....<.... |
1520 | 00 3d 2a bb 00 14 59 b7 00 15 12 40 b6 00 17 b8 00 41 2c b9 00 3f 01 00 b6 00 42 b6 00 17 b6 00 | .=*...Y....@.....A,..?....B..... |
1540 | 19 b7 00 3d 2a bb 00 14 59 b7 00 15 12 43 b6 00 17 2c b8 00 44 b6 00 17 b6 00 19 b7 00 3d 2c b8 | ...=*...Y....C...,..D........=,. |
1560 | 00 45 99 00 06 84 06 01 2a bb 00 14 59 b7 00 15 12 46 b6 00 17 2c b8 00 45 b6 00 47 b6 00 19 b7 | .E......*...Y....F...,..E..G.... |
1580 | 00 3d 2a bb 00 14 59 b7 00 15 12 48 b6 00 17 2c b9 00 49 01 00 b6 00 4a b6 00 19 b7 00 3d 2a bb | .=*...Y....H...,..I....J.....=*. |
15a0 | 00 14 59 b7 00 15 12 4b b6 00 17 2c b8 00 4c b6 00 3c b6 00 19 b7 00 3d 2a bb 00 14 59 b7 00 15 | ..Y....K...,..L..<.....=*...Y... |
15c0 | 12 4d b6 00 17 2c b8 00 4e b6 00 3c b6 00 19 b7 00 3d 2a bb 00 14 59 b7 00 15 12 4f b6 00 17 2c | .M...,..N..<.....=*...Y....O..., |
15e0 | b9 00 50 01 00 b6 00 3c b6 00 19 b7 00 3d 2a bb 00 14 59 b7 00 15 12 51 b6 00 17 2c b8 00 52 b6 | ..P....<.....=*...Y....Q...,..R. |
1600 | 00 53 b6 00 19 b7 00 3d 2a bb 00 14 59 b7 00 15 12 54 b6 00 17 2c b9 00 55 01 00 b6 00 3c b6 00 | .S.....=*...Y....T...,..U....<.. |
1620 | 19 b7 00 3d 2a bb 00 14 59 b7 00 15 12 56 b6 00 17 b8 00 41 2c b9 00 3f 01 00 b6 00 57 b6 00 3c | ...=*...Y....V.....A,..?....W..< |
1640 | b6 00 19 b7 00 3d 2a bb 00 14 59 b7 00 15 12 58 b6 00 17 2c b8 00 59 b6 00 3c b6 00 19 b7 00 0f | .....=*...Y....X...,..Y..<...... |
1660 | 2a bb 00 14 59 b7 00 15 12 5a b6 00 17 2c b8 00 5b b6 00 53 b6 00 19 b7 00 3d 2a bb 00 14 59 b7 | *...Y....Z...,..[..S.....=*...Y. |
1680 | 00 15 12 5c b6 00 17 2c b9 00 5d 01 00 b6 00 3c b6 00 19 b7 00 0f 2c b9 00 5e 01 00 3a 05 19 05 | ...\...,..]....<......,..^..:... |
16a0 | b9 00 5f 01 00 99 fe 33 19 05 b9 00 60 01 00 4e 2a bb 00 14 59 b7 00 15 12 61 b6 00 17 2c b9 00 | .._....3....`..N*...Y....a...,.. |
16c0 | 3b 01 00 b6 00 3c 12 62 b6 00 17 2d b9 00 3b 01 00 b6 00 3c 12 63 b6 00 17 19 05 b9 00 64 01 00 | ;....<.b...-..;....<.c.......d.. |
16e0 | b9 00 65 01 00 b6 00 3c b6 00 19 b7 00 0f a7 ff b0 03 36 07 15 07 2b b9 00 66 01 00 a2 00 65 2b | ..e....<..........6...+..f....e+ |
1700 | 15 07 b9 00 67 02 00 3a 08 2a bb 00 14 59 b7 00 15 12 68 b6 00 17 15 07 b6 00 3c 12 69 b6 00 17 | ....g..:.*...Y....h.......<.i... |
1720 | 19 08 b9 00 6a 01 00 b6 00 3c 12 6b b6 00 17 19 08 b9 00 6c 01 00 b6 00 3c 12 6d b6 00 17 19 08 | ....j....<.k.......l....<.m..... |
1740 | b8 00 6e 99 00 08 12 6f a7 00 05 12 70 b6 00 17 12 71 b6 00 17 b6 00 19 b7 00 0f 84 07 01 a7 ff | ..n....o....p....q.............. |
1760 | 96 2a bb 00 14 59 b7 00 15 12 72 b6 00 17 15 06 b6 00 3c 12 73 b6 00 17 b6 00 19 b7 00 0f 2a bb | .*...Y....r.......<.s.........*. |
1780 | 00 14 59 b7 00 15 12 74 b6 00 17 2b b8 00 75 b6 00 53 b6 00 19 b7 00 0f 2a 2b b6 00 76 b7 00 0f | ..Y....t...+..u..S......*+..v... |
17a0 | b1 00 00 00 00 00 02 00 8d 00 8b 00 01 00 84 00 00 00 18 00 02 00 02 00 00 00 0c 2a 2b b7 00 3d | ...........................*+..= |
17c0 | 2a 12 77 b7 00 3d b1 00 00 00 00 00 08 00 8f 00 83 00 01 00 84 00 00 00 19 00 01 00 00 00 00 00 | *.w..=.......................... |
17e0 | 0d 13 00 05 b6 00 2e b8 00 78 b3 00 13 b1 00 00 00 00 00 00 | .........x.......... |