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authorChristoph Helma <ch@in-silico.ch>2009-08-14 14:44:57 +0200
committerChristoph Helma <ch@in-silico.ch>2009-08-14 14:44:57 +0200
commit1fd85f5b8925e8fd8986497e9fab3a49acc64379 (patch)
tree9086a048bf864dc37374f28eb06a42b5545ffce5
parent26f689641023f4587bfe2af7975ee8d97af4a1df (diff)
Installation updated
-rw-r--r--README1
-rw-r--r--Rakefile2
-rw-r--r--application.rb7
-rw-r--r--test.rb6
4 files changed, 10 insertions, 6 deletions
diff --git a/README b/README
index b3c7384..349beb2 100644
--- a/README
+++ b/README
@@ -4,6 +4,7 @@ OpenTox Datasets
* An OpenTox REST Webservice
* Stores associations between compounds and features in datasets
* Implements a subset of the OpenTox dataset API (http://opentox.org/wiki/opentox/Dataset).
+* Current version runs at http://webservices.in-silico.ch/dataset/v0
REST API
diff --git a/Rakefile b/Rakefile
index 32d81fa..6705f66 100644
--- a/Rakefile
+++ b/Rakefile
@@ -3,7 +3,7 @@ require 'rake'
desc "Install required gems"
task :install do
- `sudo gem install sinatra emk-sinatra-url-for builder dm-core dm-more`
+ puts `sudo gem install sinatra emk-sinatra-url-for builder datamapper json_pure do_sqlite3`
end
desc "Run tests"
diff --git a/application.rb b/application.rb
index 670f277..4fdb685 100644
--- a/application.rb
+++ b/application.rb
@@ -1,5 +1,6 @@
## SETUP
-[ 'rubygems', 'sinatra', 'sinatra/url_for', 'datamapper', 'dm-more', 'builder', 'api_key' ].each do |lib|
+#[ 'rubygems', 'sinatra', 'sinatra/url_for', 'dm-core', 'dm-more', 'builder', 'api_key' ].each do |lib|
+[ 'rubygems', 'sinatra', 'sinatra/url_for', 'dm-core', 'dm-more', 'builder' ].each do |lib|
require lib
end
@@ -59,7 +60,7 @@ end
## REST API
-get '/' do
+get '/?' do
Dataset.all.collect{ |d| url_for("/", :full) + d.id.to_s }.join("\n")
end
@@ -186,7 +187,7 @@ get '/:id/feature/*/compounds' do
Association.all(:dataset_id => params[:id], :feature_uri => feature_uri).collect { |a| a.compound_uri }.uniq.join("\n")
end
-post '/' do
+post '/?' do
#protected!
dataset = Dataset.find_or_create :name => params[:name]
url_for("/", :full) + dataset.id.to_s
diff --git a/test.rb b/test.rb
index 9995b94..2a0252f 100644
--- a/test.rb
+++ b/test.rb
@@ -17,14 +17,14 @@ class DatasetsTest < Test::Unit::TestCase
end
def test_create_dataset
- authorize "api", API_KEY
+ #authorize "api", API_KEY
post '/', :name => "Test dataset"
assert last_response.ok?
assert_equal "http://example.org/1", last_response.body.chomp
end
def test_create_dataset_and_insert_data
- authorize "api", API_KEY
+ #authorize "api", API_KEY
post '/', :name => "Test dataset"
post '/1', :compound_uri => "test_compound_uri", :feature_uri => "test_feature_uri"
get '/1'
@@ -34,9 +34,11 @@ class DatasetsTest < Test::Unit::TestCase
assert last_response.body.include?('test_feature_uri')
end
+=begin
def test_unauthorized_create
post '/', :name => "Test dataset"
assert !last_response.ok?
end
+=end
end