1 files changed, 0 insertions, 163 deletions
diff --git a/datasets.rb b/datasets.rb
deleted file mode 100644
index a339fc3..0000000
--- a/datasets.rb
+++ /dev/null
@@ -1,163 +0,0 @@
-## SETUP
-[ 'rubygems', 'sinatra', 'rest_client', 'sinatra/url_for', 'datamapper', 'dm-more', 'do_sqlite3', 'builder', 'api_key' ].each do |lib|
-	require lib
-end
-
-# reload
-
-## MODELS
-
-class Dataset
-	include DataMapper::Resource
-	property :id, Serial
-	property :name, String, :unique => true
-	has n, :associations
-end
-
-class Association
-	include DataMapper::Resource
-	property :id, Serial
-	property :compound_uri, Text
-	property :feature_uri, Text
-	belongs_to :dataset
-end
-
-# automatically create the tables
-configure :test do 
-	DataMapper.setup(:default, 'sqlite3::memory:')
-	[Dataset, Association].each do |model|
-		model.auto_migrate!
-	end
-end
-
-@db = "datasets.sqlite3"
-configure :development, :production do
-	DataMapper::setup(:default, "sqlite3://#{Dir.pwd}/#{@db}")
-	unless FileTest.exists?("#{@db}")
-		[Dataset, Association].each do |model|
-			model.auto_migrate!
-		end
-	end
-	puts @db
-end
-
-## Authentification
-helpers do
-
-  def protected!
-    response['WWW-Authenticate'] = %(Basic realm="Testing HTTP Auth") and \
-    throw(:halt, [401, "Not authorized\n"]) and \
-    return unless authorized?
-  end
-
-  def authorized?
-    @auth ||=  Rack::Auth::Basic::Request.new(request.env)
-    @auth.provided? && @auth.basic? && @auth.credentials && @auth.credentials == ['api', API_KEY]
-  end
-
-end
-
-## REST API
-get '/' do
-	Dataset.all.collect{ |d| url_for("/", :full) + d.id.to_s }.join("\n")
-end
-
-get '/:id' do
-	begin
-		dataset = Dataset.get(params[:id])
-		builder do |xml|
-			xml.instruct!
-			xml.dataset do
-				xml.uri url_for("/", :full) + dataset.id.to_s
-				xml.name dataset.name
-				dataset.associations.each do |a|
-					xml.association do
-						xml.compound a.compound_uri
-						xml.feature a.feature_uri
-					end
-				end
-			end
-		end
-	rescue
-		status 404
-		"Cannot find dataset with ID #{params[:id]}."
-	end
-end
-
-get '/:id/compounds' do
-	dataset = Dataset.get(params[:id])
-	compounds = []
-	features = {}
-	dataset.associations.each do |a|
-		compounds << a.compound_uri
-		if features[a.compound_uri]
-			features[a.compound_uri] << a.feature_uri
-		else
-			features[a.compound_uri] = [a.feature_uri]
-		end
-	end
-	compounds.uniq!
-
-	builder do |xml|
-		xml.instruct!
-		xml.dataset do
-			xml.uri url_for("/", :full) + dataset.id.to_s
-			xml.name dataset.name
-			xml.compounds do
-				compounds.each do |p|
-					xml.compound do
-						xml.uri p
-						xml.features do
-							features[p].each do |c|
-								xml.feature c
-							end
-						end
-					end
-				end
-			end
-		end
-	end
-
-end
-
-put '/:id' do
-	#protected!
-	#begin
-		dataset = Dataset.get params[:id]
-		#compound_uri = RestClient.post COMPOUNDS_SERVICE_URI, :name => params[:compound_name]
-		#feature_uri = RestClient.post FEATURES_SERVICE_URI, :name => params[:feature_name], :value => params[:feature_value]
-		compound_uri =  params[:compound_uri]
-		puts params.to_yaml
-		feature_uri = params[:feature_uri] 
-		Association.create(:compound_uri => compound_uri.to_s, :feature_uri => feature_uri.to_s, :dataset_id => dataset.id)
-		url_for("/", :full) + dataset.id.to_s
-	#rescue
-		#status 500
-		#"Failed to update dataset #{params[:id]}."
-	#end
-end
-
-post '/' do
-	#protected!
-	dataset = Dataset.find_or_create :name => params[:name]
-	if dataset.id.nil?
-		status 500
-		"Failed to create new dataset."
-	else
-		url_for("/", :full) + dataset.id.to_s
-	end
-end
-
-delete '/:id' do
-	# dangerous, because other datasets might refer to it
-	protected!
-	begin
-		dataset = Dataset.get(params[:id])
-		dataset.associations.each { |a| a.destroy }
-		dataset.destroy
-		"Successfully deleted dataset #{params[:id]}."
-	rescue
-		status 500
-		"Can not delete dataset #{params[:id]}."
-	end
-end