diff options
Diffstat (limited to 'import.rb')
| -rw-r--r-- | import.rb | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/import.rb b/import.rb new file mode 100644 index 0000000..de6f60b --- /dev/null +++ b/import.rb @@ -0,0 +1,22 @@ +post '/dataset/*/import/?' do + find + halt 404, "Compound format #{params[:compound_format]} not (yet) supported" unless params[:compound_format] =~ /smiles|inchi|name/ + @compounds_set = Dataset.find File.join(@set.uri, "compounds") + case params[:file][:type] + when "text/csv" + File.open(params[:file][:tempfile].path).each_line do |line| + record = line.chomp.split(/,\s*/) + compound_uri = OpenTox::Compound.new(:smiles => record[0]).uri + feature_uri = OpenTox::Feature.new(:name => @set.name.sub(/dataset\//,''), :values => {:classification => record[1]}).uri + @compounds_set.add compound_uri unless @compounds_set.member? compound_uri + # key: /dataset/:dataset/compound/:inchi/:feature_type + @compound_features = Dataset.find_or_create File.join(@set.uri,'compound',OpenTox::Compound.new(:uri => compound_uri).inchi,URI.escape(params[:feature_type])) + @compound_features.add feature_uri + end + else + halt 404, "File format #{request.content_type} not (yet) supported" + end + @set.uri + +end + |