diff options
Diffstat (limited to 'import.rb')
| -rw-r--r-- | import.rb | 8 |
1 files changed, 5 insertions, 3 deletions
@@ -2,15 +2,17 @@ post '/dataset/*/import/?' do find halt 404, "Compound format #{params[:compound_format]} not (yet) supported" unless params[:compound_format] =~ /smiles|inchi|name/ @compounds_set = Dataset.find File.join(@set.uri, "compounds") + @features_set = Dataset.find File.join(@set.uri, "features") case params[:file][:type] when "text/csv" File.open(params[:file][:tempfile].path).each_line do |line| record = line.chomp.split(/,\s*/) compound_uri = OpenTox::Compound.new(:smiles => record[0]).uri feature_uri = OpenTox::Feature.new(:name => @set.name.sub(/dataset\//,''), :values => {:classification => record[1]}).uri - @compounds_set.add compound_uri unless @compounds_set.member? compound_uri - # key: /dataset/:dataset/compound/:inchi/:feature_type - @compound_features = Dataset.find_or_create File.join(@set.uri,'compound',OpenTox::Compound.new(:uri => compound_uri).inchi,URI.escape(params[:feature_type])) + @compounds_set.add compound_uri #unless @compounds_set.member? compound_uri + @features_set.add feature_uri #unless @features_set.member? feature_uri + # key: /dataset/:dataset/compound/:inchi + @compound_features = Dataset.find_or_create File.join(@set.uri,'compound',OpenTox::Compound.new(:uri => compound_uri).inchi) @compound_features.add feature_uri end else |