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+<HTML
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+><DIV
+CLASS="SECT1"
+><H1
+CLASS="SECT1"
+><A
+NAME="JOELIB.ALGORITHMS.DISTANCEMATRIX"
+></A
+>Topological distance matrix</H1
+><P
+>Calculates the topological distances between all atom pairs.
+Here a simple Breadth First Search  (BFS )
+is used to calculate these distances, which causes a running time of
+<SPAN
+CLASS="bold"
+><B
+CLASS="EMPHASIS"
+>O(A<SUP
+>3</SUP
+>)</B
+></SPAN
+>, where
+<SPAN
+CLASS="bold"
+><B
+CLASS="EMPHASIS"
+>A</B
+></SPAN
+> is the number of atoms.</P
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