summaryrefslogtreecommitdiff
path: root/java/joelib2/util
diff options
context:
space:
mode:
Diffstat (limited to 'java/joelib2/util')
-rw-r--r--java/joelib2/util/ArrayHelper.classbin0 -> 985 bytes
-rw-r--r--java/joelib2/util/BasicArrayHelper.classbin0 -> 7941 bytes
-rw-r--r--java/joelib2/util/BasicBitVector.classbin0 -> 4666 bytes
-rw-r--r--java/joelib2/util/BasicLineArrayHelper.classbin0 -> 5854 bytes
-rw-r--r--java/joelib2/util/BasicLineMatrixHelper.classbin0 -> 2777 bytes
-rw-r--r--java/joelib2/util/BasicMatrixHelper.classbin0 -> 7948 bytes
-rw-r--r--java/joelib2/util/BasicMoleculeCacheHolder.classbin0 -> 1684 bytes
-rw-r--r--java/joelib2/util/BasicProperty.classbin0 -> 1398 bytes
-rw-r--r--java/joelib2/util/BitSetInterface.classbin0 -> 668 bytes
-rw-r--r--java/joelib2/util/BitVector.classbin0 -> 1136 bytes
-rw-r--r--java/joelib2/util/HelperMethods.classbin0 -> 11584 bytes
-rw-r--r--java/joelib2/util/LineArrayHelper.classbin0 -> 80 bytes
-rw-r--r--java/joelib2/util/LineMatrixHelper.classbin0 -> 81 bytes
-rw-r--r--java/joelib2/util/MatrixHelper.classbin0 -> 1022 bytes
-rw-r--r--java/joelib2/util/MoleculeCacheHolder.classbin0 -> 291 bytes
-rw-r--r--java/joelib2/util/Property.classbin0 -> 514 bytes
-rw-r--r--java/joelib2/util/PropertyAcceptor.classbin0 -> 144 bytes
-rw-r--r--java/joelib2/util/PropertyException.classbin0 -> 214 bytes
-rw-r--r--java/joelib2/util/PropertyHelper.classbin0 -> 1998 bytes
-rw-r--r--java/joelib2/util/RandomNumber.classbin0 -> 498 bytes
-rw-r--r--java/joelib2/util/database/AbstractDatabase.classbin0 -> 4809 bytes
-rw-r--r--java/joelib2/util/database/BasicJOELibDatabase.classbin0 -> 6172 bytes
-rw-r--r--java/joelib2/util/database/DatabaseInterface.classbin0 -> 454 bytes
-rw-r--r--java/joelib2/util/database/SimpleJOELibDatabase.classbin0 -> 6223 bytes
-rw-r--r--java/joelib2/util/ghemical/GhemicalException.classbin0 -> 223 bytes
-rw-r--r--java/joelib2/util/ghemical/GhemicalInterface.classbin0 -> 4920 bytes
-rw-r--r--java/joelib2/util/ghemical/TestInterface.classbin0 -> 4419 bytes
-rw-r--r--java/joelib2/util/iterator/AtomIterator.classbin0 -> 175 bytes
-rw-r--r--java/joelib2/util/iterator/BasicAtomIterator.classbin0 -> 627 bytes
-rw-r--r--java/joelib2/util/iterator/BasicBondIterator.classbin0 -> 376 bytes
-rw-r--r--java/joelib2/util/iterator/BasicConformerIterator.classbin0 -> 354 bytes
-rw-r--r--java/joelib2/util/iterator/BasicEdgeIterator.classbin0 -> 376 bytes
-rw-r--r--java/joelib2/util/iterator/BasicListIterator.classbin0 -> 1486 bytes
-rw-r--r--java/joelib2/util/iterator/BasicNativeValueIterator.classbin0 -> 1859 bytes
-rw-r--r--java/joelib2/util/iterator/BasicNbrAtomIterator.classbin0 -> 867 bytes
-rw-r--r--java/joelib2/util/iterator/BasicNbrNodeIterator.classbin0 -> 867 bytes
-rw-r--r--java/joelib2/util/iterator/BasicPairDataIterator.classbin0 -> 1014 bytes
-rw-r--r--java/joelib2/util/iterator/BasicResidueIterator.classbin0 -> 413 bytes
-rw-r--r--java/joelib2/util/iterator/BasicRingIterator.classbin0 -> 368 bytes
-rw-r--r--java/joelib2/util/iterator/BasicRotamerIterator.classbin0 -> 348 bytes
-rw-r--r--java/joelib2/util/iterator/BasicRotorIterator.classbin0 -> 342 bytes
-rw-r--r--java/joelib2/util/iterator/BondIterator.classbin0 -> 175 bytes
-rw-r--r--java/joelib2/util/iterator/ConformerIterator.classbin0 -> 164 bytes
-rw-r--r--java/joelib2/util/iterator/EdgeIterator.classbin0 -> 175 bytes
-rw-r--r--java/joelib2/util/iterator/IteratorException.classbin0 -> 287 bytes
-rw-r--r--java/joelib2/util/iterator/ListIterator.classbin0 -> 388 bytes
-rw-r--r--java/joelib2/util/iterator/NativeValueIterator.classbin0 -> 354 bytes
-rw-r--r--java/joelib2/util/iterator/NbrAtomIterator.classbin0 -> 285 bytes
-rw-r--r--java/joelib2/util/iterator/NbrNodeIterator.classbin0 -> 285 bytes
-rw-r--r--java/joelib2/util/iterator/PairDataIterator.classbin0 -> 241 bytes
-rw-r--r--java/joelib2/util/iterator/ResidueIterator.classbin0 -> 195 bytes
-rw-r--r--java/joelib2/util/iterator/RingIterator.classbin0 -> 171 bytes
-rw-r--r--java/joelib2/util/iterator/RotamerIterator.classbin0 -> 160 bytes
-rw-r--r--java/joelib2/util/iterator/RotorIterator.classbin0 -> 156 bytes
-rw-r--r--java/joelib2/util/types/AtomArray.classbin0 -> 177 bytes
-rw-r--r--java/joelib2/util/types/AtomArrayInt.classbin0 -> 154 bytes
-rw-r--r--java/joelib2/util/types/AtomBoolean.classbin0 -> 159 bytes
-rw-r--r--java/joelib2/util/types/AtomDouble.classbin0 -> 157 bytes
-rw-r--r--java/joelib2/util/types/AtomHCount.classbin0 -> 358 bytes
-rw-r--r--java/joelib2/util/types/AtomInt.classbin0 -> 151 bytes
-rw-r--r--java/joelib2/util/types/AtomIntInt.classbin0 -> 152 bytes
-rw-r--r--java/joelib2/util/types/AtomString.classbin0 -> 157 bytes
-rw-r--r--java/joelib2/util/types/AtomWrapper.classbin0 -> 175 bytes
-rw-r--r--java/joelib2/util/types/BasicAtomArrayInt.classbin0 -> 490 bytes
-rw-r--r--java/joelib2/util/types/BasicAtomBoolean.classbin0 -> 530 bytes
-rw-r--r--java/joelib2/util/types/BasicAtomDouble.classbin0 -> 1098 bytes
-rw-r--r--java/joelib2/util/types/BasicAtomInt.classbin0 -> 511 bytes
-rw-r--r--java/joelib2/util/types/BasicAtomIntInt.classbin0 -> 933 bytes
-rw-r--r--java/joelib2/util/types/BasicAtomWrapper.classbin0 -> 507 bytes
-rw-r--r--java/joelib2/util/types/BasicBondInt.classbin0 -> 519 bytes
-rw-r--r--java/joelib2/util/types/BasicBondWrapper.classbin0 -> 507 bytes
-rw-r--r--java/joelib2/util/types/BasicDouble.classbin0 -> 912 bytes
-rw-r--r--java/joelib2/util/types/BasicDoubleInt.classbin0 -> 826 bytes
-rw-r--r--java/joelib2/util/types/BasicFactoryInfo.classbin0 -> 1111 bytes
-rw-r--r--java/joelib2/util/types/BasicInt.classbin0 -> 753 bytes
-rw-r--r--java/joelib2/util/types/BasicIntInt.classbin0 -> 979 bytes
-rw-r--r--java/joelib2/util/types/BasicIntIntInt.classbin0 -> 1172 bytes
-rw-r--r--java/joelib2/util/types/BasicStackType.classbin0 -> 629 bytes
-rw-r--r--java/joelib2/util/types/BasicStringInt.classbin0 -> 1089 bytes
-rw-r--r--java/joelib2/util/types/BasicStringObject.classbin0 -> 698 bytes
-rw-r--r--java/joelib2/util/types/BasicStringPattern.classbin0 -> 731 bytes
-rw-r--r--java/joelib2/util/types/BasicStringString.classbin0 -> 1268 bytes
-rw-r--r--java/joelib2/util/types/BondBoolean.classbin0 -> 159 bytes
-rw-r--r--java/joelib2/util/types/BondDouble.classbin0 -> 157 bytes
-rw-r--r--java/joelib2/util/types/BondInt.classbin0 -> 151 bytes
-rw-r--r--java/joelib2/util/types/BondString.classbin0 -> 157 bytes
-rw-r--r--java/joelib2/util/types/BondWrapper.classbin0 -> 175 bytes
-rw-r--r--java/joelib2/util/types/BooleanValue.classbin0 -> 147 bytes
-rw-r--r--java/joelib2/util/types/DoubleDouble.classbin0 -> 632 bytes
-rw-r--r--java/joelib2/util/types/DoubleInt.classbin0 -> 153 bytes
-rw-r--r--java/joelib2/util/types/DoubleType.classbin0 -> 202 bytes
-rw-r--r--java/joelib2/util/types/DoubleValue.classbin0 -> 253 bytes
-rw-r--r--java/joelib2/util/types/FactoryInfo.classbin0 -> 298 bytes
-rw-r--r--java/joelib2/util/types/IntInt.classbin0 -> 284 bytes
-rw-r--r--java/joelib2/util/types/IntIntInt.classbin0 -> 305 bytes
-rw-r--r--java/joelib2/util/types/IntValue.classbin0 -> 238 bytes
-rw-r--r--java/joelib2/util/types/StackType.classbin0 -> 209 bytes
-rw-r--r--java/joelib2/util/types/StringDouble.classbin0 -> 159 bytes
-rw-r--r--java/joelib2/util/types/StringInt.classbin0 -> 153 bytes
-rw-r--r--java/joelib2/util/types/StringObject.classbin0 -> 257 bytes
-rw-r--r--java/joelib2/util/types/StringPattern.classbin0 -> 274 bytes
-rw-r--r--java/joelib2/util/types/StringString.classbin0 -> 319 bytes
-rw-r--r--java/joelib2/util/types/StringValue.classbin0 -> 264 bytes
103 files changed, 0 insertions, 0 deletions
diff --git a/java/joelib2/util/ArrayHelper.class b/java/joelib2/util/ArrayHelper.class
new file mode 100644
index 0000000..44a1dc3
--- /dev/null
+++ b/java/joelib2/util/ArrayHelper.class
Binary files differ
diff --git a/java/joelib2/util/BasicArrayHelper.class b/java/joelib2/util/BasicArrayHelper.class
new file mode 100644
index 0000000..8e5744e
--- /dev/null
+++ b/java/joelib2/util/BasicArrayHelper.class
Binary files differ
diff --git a/java/joelib2/util/BasicBitVector.class b/java/joelib2/util/BasicBitVector.class
new file mode 100644
index 0000000..4558740
--- /dev/null
+++ b/java/joelib2/util/BasicBitVector.class
Binary files differ
diff --git a/java/joelib2/util/BasicLineArrayHelper.class b/java/joelib2/util/BasicLineArrayHelper.class
new file mode 100644
index 0000000..b63a87e
--- /dev/null
+++ b/java/joelib2/util/BasicLineArrayHelper.class
Binary files differ
diff --git a/java/joelib2/util/BasicLineMatrixHelper.class b/java/joelib2/util/BasicLineMatrixHelper.class
new file mode 100644
index 0000000..416d530
--- /dev/null
+++ b/java/joelib2/util/BasicLineMatrixHelper.class
Binary files differ
diff --git a/java/joelib2/util/BasicMatrixHelper.class b/java/joelib2/util/BasicMatrixHelper.class
new file mode 100644
index 0000000..427863b
--- /dev/null
+++ b/java/joelib2/util/BasicMatrixHelper.class
Binary files differ
diff --git a/java/joelib2/util/BasicMoleculeCacheHolder.class b/java/joelib2/util/BasicMoleculeCacheHolder.class
new file mode 100644
index 0000000..ef07d60
--- /dev/null
+++ b/java/joelib2/util/BasicMoleculeCacheHolder.class
Binary files differ
diff --git a/java/joelib2/util/BasicProperty.class b/java/joelib2/util/BasicProperty.class
new file mode 100644
index 0000000..8af32bd
--- /dev/null
+++ b/java/joelib2/util/BasicProperty.class
Binary files differ
diff --git a/java/joelib2/util/BitSetInterface.class b/java/joelib2/util/BitSetInterface.class
new file mode 100644
index 0000000..e3dccea
--- /dev/null
+++ b/java/joelib2/util/BitSetInterface.class
Binary files differ
diff --git a/java/joelib2/util/BitVector.class b/java/joelib2/util/BitVector.class
new file mode 100644
index 0000000..623f51a
--- /dev/null
+++ b/java/joelib2/util/BitVector.class
Binary files differ
diff --git a/java/joelib2/util/HelperMethods.class b/java/joelib2/util/HelperMethods.class
new file mode 100644
index 0000000..0a089c6
--- /dev/null
+++ b/java/joelib2/util/HelperMethods.class
Binary files differ
diff --git a/java/joelib2/util/LineArrayHelper.class b/java/joelib2/util/LineArrayHelper.class
new file mode 100644
index 0000000..6e07b79
--- /dev/null
+++ b/java/joelib2/util/LineArrayHelper.class
Binary files differ
diff --git a/java/joelib2/util/LineMatrixHelper.class b/java/joelib2/util/LineMatrixHelper.class
new file mode 100644
index 0000000..0ccd631
--- /dev/null
+++ b/java/joelib2/util/LineMatrixHelper.class
Binary files differ
diff --git a/java/joelib2/util/MatrixHelper.class b/java/joelib2/util/MatrixHelper.class
new file mode 100644
index 0000000..37e7dea
--- /dev/null
+++ b/java/joelib2/util/MatrixHelper.class
Binary files differ
diff --git a/java/joelib2/util/MoleculeCacheHolder.class b/java/joelib2/util/MoleculeCacheHolder.class
new file mode 100644
index 0000000..e1683e7
--- /dev/null
+++ b/java/joelib2/util/MoleculeCacheHolder.class
Binary files differ
diff --git a/java/joelib2/util/Property.class b/java/joelib2/util/Property.class
new file mode 100644
index 0000000..fe4ad8a
--- /dev/null
+++ b/java/joelib2/util/Property.class
Binary files differ
diff --git a/java/joelib2/util/PropertyAcceptor.class b/java/joelib2/util/PropertyAcceptor.class
new file mode 100644
index 0000000..e3a45ed
--- /dev/null
+++ b/java/joelib2/util/PropertyAcceptor.class
Binary files differ
diff --git a/java/joelib2/util/PropertyException.class b/java/joelib2/util/PropertyException.class
new file mode 100644
index 0000000..528f937
--- /dev/null
+++ b/java/joelib2/util/PropertyException.class
Binary files differ
diff --git a/java/joelib2/util/PropertyHelper.class b/java/joelib2/util/PropertyHelper.class
new file mode 100644
index 0000000..362554d
--- /dev/null
+++ b/java/joelib2/util/PropertyHelper.class
Binary files differ
diff --git a/java/joelib2/util/RandomNumber.class b/java/joelib2/util/RandomNumber.class
new file mode 100644
index 0000000..2c92365
--- /dev/null
+++ b/java/joelib2/util/RandomNumber.class
Binary files differ
diff --git a/java/joelib2/util/database/AbstractDatabase.class b/java/joelib2/util/database/AbstractDatabase.class
new file mode 100644
index 0000000..0e1632b
--- /dev/null
+++ b/java/joelib2/util/database/AbstractDatabase.class
Binary files differ
diff --git a/java/joelib2/util/database/BasicJOELibDatabase.class b/java/joelib2/util/database/BasicJOELibDatabase.class
new file mode 100644
index 0000000..adbb382
--- /dev/null
+++ b/java/joelib2/util/database/BasicJOELibDatabase.class
Binary files differ
diff --git a/java/joelib2/util/database/DatabaseInterface.class b/java/joelib2/util/database/DatabaseInterface.class
new file mode 100644
index 0000000..075e2e7
--- /dev/null
+++ b/java/joelib2/util/database/DatabaseInterface.class
Binary files differ
diff --git a/java/joelib2/util/database/SimpleJOELibDatabase.class b/java/joelib2/util/database/SimpleJOELibDatabase.class
new file mode 100644
index 0000000..1955623
--- /dev/null
+++ b/java/joelib2/util/database/SimpleJOELibDatabase.class
Binary files differ
diff --git a/java/joelib2/util/ghemical/GhemicalException.class b/java/joelib2/util/ghemical/GhemicalException.class
new file mode 100644
index 0000000..d2bdc0e
--- /dev/null
+++ b/java/joelib2/util/ghemical/GhemicalException.class
Binary files differ
diff --git a/java/joelib2/util/ghemical/GhemicalInterface.class b/java/joelib2/util/ghemical/GhemicalInterface.class
new file mode 100644
index 0000000..09b0beb
--- /dev/null
+++ b/java/joelib2/util/ghemical/GhemicalInterface.class
Binary files differ
diff --git a/java/joelib2/util/ghemical/TestInterface.class b/java/joelib2/util/ghemical/TestInterface.class
new file mode 100644
index 0000000..7ff0b73
--- /dev/null
+++ b/java/joelib2/util/ghemical/TestInterface.class
Binary files differ
diff --git a/java/joelib2/util/iterator/AtomIterator.class b/java/joelib2/util/iterator/AtomIterator.class
new file mode 100644
index 0000000..1ca16d2
--- /dev/null
+++ b/java/joelib2/util/iterator/AtomIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/BasicAtomIterator.class b/java/joelib2/util/iterator/BasicAtomIterator.class
new file mode 100644
index 0000000..37103cc
--- /dev/null
+++ b/java/joelib2/util/iterator/BasicAtomIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/BasicBondIterator.class b/java/joelib2/util/iterator/BasicBondIterator.class
new file mode 100644
index 0000000..8ee64c8
--- /dev/null
+++ b/java/joelib2/util/iterator/BasicBondIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/BasicConformerIterator.class b/java/joelib2/util/iterator/BasicConformerIterator.class
new file mode 100644
index 0000000..f991a0b
--- /dev/null
+++ b/java/joelib2/util/iterator/BasicConformerIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/BasicEdgeIterator.class b/java/joelib2/util/iterator/BasicEdgeIterator.class
new file mode 100644
index 0000000..0ae9ade
--- /dev/null
+++ b/java/joelib2/util/iterator/BasicEdgeIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/BasicListIterator.class b/java/joelib2/util/iterator/BasicListIterator.class
new file mode 100644
index 0000000..e507e10
--- /dev/null
+++ b/java/joelib2/util/iterator/BasicListIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/BasicNativeValueIterator.class b/java/joelib2/util/iterator/BasicNativeValueIterator.class
new file mode 100644
index 0000000..157a9d7
--- /dev/null
+++ b/java/joelib2/util/iterator/BasicNativeValueIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/BasicNbrAtomIterator.class b/java/joelib2/util/iterator/BasicNbrAtomIterator.class
new file mode 100644
index 0000000..2c07a32
--- /dev/null
+++ b/java/joelib2/util/iterator/BasicNbrAtomIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/BasicNbrNodeIterator.class b/java/joelib2/util/iterator/BasicNbrNodeIterator.class
new file mode 100644
index 0000000..d005dd0
--- /dev/null
+++ b/java/joelib2/util/iterator/BasicNbrNodeIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/BasicPairDataIterator.class b/java/joelib2/util/iterator/BasicPairDataIterator.class
new file mode 100644
index 0000000..a46dff1
--- /dev/null
+++ b/java/joelib2/util/iterator/BasicPairDataIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/BasicResidueIterator.class b/java/joelib2/util/iterator/BasicResidueIterator.class
new file mode 100644
index 0000000..7d48495
--- /dev/null
+++ b/java/joelib2/util/iterator/BasicResidueIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/BasicRingIterator.class b/java/joelib2/util/iterator/BasicRingIterator.class
new file mode 100644
index 0000000..dafb1ad
--- /dev/null
+++ b/java/joelib2/util/iterator/BasicRingIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/BasicRotamerIterator.class b/java/joelib2/util/iterator/BasicRotamerIterator.class
new file mode 100644
index 0000000..2eadc9e
--- /dev/null
+++ b/java/joelib2/util/iterator/BasicRotamerIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/BasicRotorIterator.class b/java/joelib2/util/iterator/BasicRotorIterator.class
new file mode 100644
index 0000000..b46ad36
--- /dev/null
+++ b/java/joelib2/util/iterator/BasicRotorIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/BondIterator.class b/java/joelib2/util/iterator/BondIterator.class
new file mode 100644
index 0000000..d50a632
--- /dev/null
+++ b/java/joelib2/util/iterator/BondIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/ConformerIterator.class b/java/joelib2/util/iterator/ConformerIterator.class
new file mode 100644
index 0000000..53165ec
--- /dev/null
+++ b/java/joelib2/util/iterator/ConformerIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/EdgeIterator.class b/java/joelib2/util/iterator/EdgeIterator.class
new file mode 100644
index 0000000..2ac7112
--- /dev/null
+++ b/java/joelib2/util/iterator/EdgeIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/IteratorException.class b/java/joelib2/util/iterator/IteratorException.class
new file mode 100644
index 0000000..2a101d9
--- /dev/null
+++ b/java/joelib2/util/iterator/IteratorException.class
Binary files differ
diff --git a/java/joelib2/util/iterator/ListIterator.class b/java/joelib2/util/iterator/ListIterator.class
new file mode 100644
index 0000000..78f9e54
--- /dev/null
+++ b/java/joelib2/util/iterator/ListIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/NativeValueIterator.class b/java/joelib2/util/iterator/NativeValueIterator.class
new file mode 100644
index 0000000..95100e1
--- /dev/null
+++ b/java/joelib2/util/iterator/NativeValueIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/NbrAtomIterator.class b/java/joelib2/util/iterator/NbrAtomIterator.class
new file mode 100644
index 0000000..07ed0c7
--- /dev/null
+++ b/java/joelib2/util/iterator/NbrAtomIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/NbrNodeIterator.class b/java/joelib2/util/iterator/NbrNodeIterator.class
new file mode 100644
index 0000000..275b100
--- /dev/null
+++ b/java/joelib2/util/iterator/NbrNodeIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/PairDataIterator.class b/java/joelib2/util/iterator/PairDataIterator.class
new file mode 100644
index 0000000..c1c9ee5
--- /dev/null
+++ b/java/joelib2/util/iterator/PairDataIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/ResidueIterator.class b/java/joelib2/util/iterator/ResidueIterator.class
new file mode 100644
index 0000000..d17106d
--- /dev/null
+++ b/java/joelib2/util/iterator/ResidueIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/RingIterator.class b/java/joelib2/util/iterator/RingIterator.class
new file mode 100644
index 0000000..5501303
--- /dev/null
+++ b/java/joelib2/util/iterator/RingIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/RotamerIterator.class b/java/joelib2/util/iterator/RotamerIterator.class
new file mode 100644
index 0000000..a3e04ca
--- /dev/null
+++ b/java/joelib2/util/iterator/RotamerIterator.class
Binary files differ
diff --git a/java/joelib2/util/iterator/RotorIterator.class b/java/joelib2/util/iterator/RotorIterator.class
new file mode 100644
index 0000000..30923d7
--- /dev/null
+++ b/java/joelib2/util/iterator/RotorIterator.class
Binary files differ
diff --git a/java/joelib2/util/types/AtomArray.class b/java/joelib2/util/types/AtomArray.class
new file mode 100644
index 0000000..1186af3
--- /dev/null
+++ b/java/joelib2/util/types/AtomArray.class
Binary files differ
diff --git a/java/joelib2/util/types/AtomArrayInt.class b/java/joelib2/util/types/AtomArrayInt.class
new file mode 100644
index 0000000..240618d
--- /dev/null
+++ b/java/joelib2/util/types/AtomArrayInt.class
Binary files differ
diff --git a/java/joelib2/util/types/AtomBoolean.class b/java/joelib2/util/types/AtomBoolean.class
new file mode 100644
index 0000000..21350de
--- /dev/null
+++ b/java/joelib2/util/types/AtomBoolean.class
Binary files differ
diff --git a/java/joelib2/util/types/AtomDouble.class b/java/joelib2/util/types/AtomDouble.class
new file mode 100644
index 0000000..a60b45d
--- /dev/null
+++ b/java/joelib2/util/types/AtomDouble.class
Binary files differ
diff --git a/java/joelib2/util/types/AtomHCount.class b/java/joelib2/util/types/AtomHCount.class
new file mode 100644
index 0000000..769ea0d
--- /dev/null
+++ b/java/joelib2/util/types/AtomHCount.class
Binary files differ
diff --git a/java/joelib2/util/types/AtomInt.class b/java/joelib2/util/types/AtomInt.class
new file mode 100644
index 0000000..56b3d69
--- /dev/null
+++ b/java/joelib2/util/types/AtomInt.class
Binary files differ
diff --git a/java/joelib2/util/types/AtomIntInt.class b/java/joelib2/util/types/AtomIntInt.class
new file mode 100644
index 0000000..739e8ea
--- /dev/null
+++ b/java/joelib2/util/types/AtomIntInt.class
Binary files differ
diff --git a/java/joelib2/util/types/AtomString.class b/java/joelib2/util/types/AtomString.class
new file mode 100644
index 0000000..389a642
--- /dev/null
+++ b/java/joelib2/util/types/AtomString.class
Binary files differ
diff --git a/java/joelib2/util/types/AtomWrapper.class b/java/joelib2/util/types/AtomWrapper.class
new file mode 100644
index 0000000..08518b5
--- /dev/null
+++ b/java/joelib2/util/types/AtomWrapper.class
Binary files differ
diff --git a/java/joelib2/util/types/BasicAtomArrayInt.class b/java/joelib2/util/types/BasicAtomArrayInt.class
new file mode 100644
index 0000000..b20596c
--- /dev/null
+++ b/java/joelib2/util/types/BasicAtomArrayInt.class
Binary files differ
diff --git a/java/joelib2/util/types/BasicAtomBoolean.class b/java/joelib2/util/types/BasicAtomBoolean.class
new file mode 100644
index 0000000..cc2c181
--- /dev/null
+++ b/java/joelib2/util/types/BasicAtomBoolean.class
Binary files differ
diff --git a/java/joelib2/util/types/BasicAtomDouble.class b/java/joelib2/util/types/BasicAtomDouble.class
new file mode 100644
index 0000000..42b2142
--- /dev/null
+++ b/java/joelib2/util/types/BasicAtomDouble.class
Binary files differ
diff --git a/java/joelib2/util/types/BasicAtomInt.class b/java/joelib2/util/types/BasicAtomInt.class
new file mode 100644
index 0000000..cfd0ada
--- /dev/null
+++ b/java/joelib2/util/types/BasicAtomInt.class
Binary files differ
diff --git a/java/joelib2/util/types/BasicAtomIntInt.class b/java/joelib2/util/types/BasicAtomIntInt.class
new file mode 100644
index 0000000..b8d886d
--- /dev/null
+++ b/java/joelib2/util/types/BasicAtomIntInt.class
Binary files differ
diff --git a/java/joelib2/util/types/BasicAtomWrapper.class b/java/joelib2/util/types/BasicAtomWrapper.class
new file mode 100644
index 0000000..8985d32
--- /dev/null
+++ b/java/joelib2/util/types/BasicAtomWrapper.class
Binary files differ
diff --git a/java/joelib2/util/types/BasicBondInt.class b/java/joelib2/util/types/BasicBondInt.class
new file mode 100644
index 0000000..349994b
--- /dev/null
+++ b/java/joelib2/util/types/BasicBondInt.class
Binary files differ
diff --git a/java/joelib2/util/types/BasicBondWrapper.class b/java/joelib2/util/types/BasicBondWrapper.class
new file mode 100644
index 0000000..3cdf628
--- /dev/null
+++ b/java/joelib2/util/types/BasicBondWrapper.class
Binary files differ
diff --git a/java/joelib2/util/types/BasicDouble.class b/java/joelib2/util/types/BasicDouble.class
new file mode 100644
index 0000000..7387c51
--- /dev/null
+++ b/java/joelib2/util/types/BasicDouble.class
Binary files differ
diff --git a/java/joelib2/util/types/BasicDoubleInt.class b/java/joelib2/util/types/BasicDoubleInt.class
new file mode 100644
index 0000000..97dc8ef
--- /dev/null
+++ b/java/joelib2/util/types/BasicDoubleInt.class
Binary files differ
diff --git a/java/joelib2/util/types/BasicFactoryInfo.class b/java/joelib2/util/types/BasicFactoryInfo.class
new file mode 100644
index 0000000..e49b92e
--- /dev/null
+++ b/java/joelib2/util/types/BasicFactoryInfo.class
Binary files differ
diff --git a/java/joelib2/util/types/BasicInt.class b/java/joelib2/util/types/BasicInt.class
new file mode 100644
index 0000000..13c593f
--- /dev/null
+++ b/java/joelib2/util/types/BasicInt.class
Binary files differ
diff --git a/java/joelib2/util/types/BasicIntInt.class b/java/joelib2/util/types/BasicIntInt.class
new file mode 100644
index 0000000..20efb95
--- /dev/null
+++ b/java/joelib2/util/types/BasicIntInt.class
Binary files differ
diff --git a/java/joelib2/util/types/BasicIntIntInt.class b/java/joelib2/util/types/BasicIntIntInt.class
new file mode 100644
index 0000000..fe7e57f
--- /dev/null
+++ b/java/joelib2/util/types/BasicIntIntInt.class
Binary files differ
diff --git a/java/joelib2/util/types/BasicStackType.class b/java/joelib2/util/types/BasicStackType.class
new file mode 100644
index 0000000..cb25fb3
--- /dev/null
+++ b/java/joelib2/util/types/BasicStackType.class
Binary files differ
diff --git a/java/joelib2/util/types/BasicStringInt.class b/java/joelib2/util/types/BasicStringInt.class
new file mode 100644
index 0000000..2ed37cc
--- /dev/null
+++ b/java/joelib2/util/types/BasicStringInt.class
Binary files differ
diff --git a/java/joelib2/util/types/BasicStringObject.class b/java/joelib2/util/types/BasicStringObject.class
new file mode 100644
index 0000000..45a60f0
--- /dev/null
+++ b/java/joelib2/util/types/BasicStringObject.class
Binary files differ
diff --git a/java/joelib2/util/types/BasicStringPattern.class b/java/joelib2/util/types/BasicStringPattern.class
new file mode 100644
index 0000000..1fc3129
--- /dev/null
+++ b/java/joelib2/util/types/BasicStringPattern.class
Binary files differ
diff --git a/java/joelib2/util/types/BasicStringString.class b/java/joelib2/util/types/BasicStringString.class
new file mode 100644
index 0000000..3e1b5f0
--- /dev/null
+++ b/java/joelib2/util/types/BasicStringString.class
Binary files differ
diff --git a/java/joelib2/util/types/BondBoolean.class b/java/joelib2/util/types/BondBoolean.class
new file mode 100644
index 0000000..2ea9a7b
--- /dev/null
+++ b/java/joelib2/util/types/BondBoolean.class
Binary files differ
diff --git a/java/joelib2/util/types/BondDouble.class b/java/joelib2/util/types/BondDouble.class
new file mode 100644
index 0000000..55a50d5
--- /dev/null
+++ b/java/joelib2/util/types/BondDouble.class
Binary files differ
diff --git a/java/joelib2/util/types/BondInt.class b/java/joelib2/util/types/BondInt.class
new file mode 100644
index 0000000..eebc8ac
--- /dev/null
+++ b/java/joelib2/util/types/BondInt.class
Binary files differ
diff --git a/java/joelib2/util/types/BondString.class b/java/joelib2/util/types/BondString.class
new file mode 100644
index 0000000..c7f17d5
--- /dev/null
+++ b/java/joelib2/util/types/BondString.class
Binary files differ
diff --git a/java/joelib2/util/types/BondWrapper.class b/java/joelib2/util/types/BondWrapper.class
new file mode 100644
index 0000000..c1b0f64
--- /dev/null
+++ b/java/joelib2/util/types/BondWrapper.class
Binary files differ
diff --git a/java/joelib2/util/types/BooleanValue.class b/java/joelib2/util/types/BooleanValue.class
new file mode 100644
index 0000000..ab783ab
--- /dev/null
+++ b/java/joelib2/util/types/BooleanValue.class
Binary files differ
diff --git a/java/joelib2/util/types/DoubleDouble.class b/java/joelib2/util/types/DoubleDouble.class
new file mode 100644
index 0000000..96c189b
--- /dev/null
+++ b/java/joelib2/util/types/DoubleDouble.class
Binary files differ
diff --git a/java/joelib2/util/types/DoubleInt.class b/java/joelib2/util/types/DoubleInt.class
new file mode 100644
index 0000000..d805195
--- /dev/null
+++ b/java/joelib2/util/types/DoubleInt.class
Binary files differ
diff --git a/java/joelib2/util/types/DoubleType.class b/java/joelib2/util/types/DoubleType.class
new file mode 100644
index 0000000..0db8adf
--- /dev/null
+++ b/java/joelib2/util/types/DoubleType.class
Binary files differ
diff --git a/java/joelib2/util/types/DoubleValue.class b/java/joelib2/util/types/DoubleValue.class
new file mode 100644
index 0000000..f286784
--- /dev/null
+++ b/java/joelib2/util/types/DoubleValue.class
Binary files differ
diff --git a/java/joelib2/util/types/FactoryInfo.class b/java/joelib2/util/types/FactoryInfo.class
new file mode 100644
index 0000000..934cc01
--- /dev/null
+++ b/java/joelib2/util/types/FactoryInfo.class
Binary files differ
diff --git a/java/joelib2/util/types/IntInt.class b/java/joelib2/util/types/IntInt.class
new file mode 100644
index 0000000..5eab8fe
--- /dev/null
+++ b/java/joelib2/util/types/IntInt.class
Binary files differ
diff --git a/java/joelib2/util/types/IntIntInt.class b/java/joelib2/util/types/IntIntInt.class
new file mode 100644
index 0000000..195fa2d
--- /dev/null
+++ b/java/joelib2/util/types/IntIntInt.class
Binary files differ
diff --git a/java/joelib2/util/types/IntValue.class b/java/joelib2/util/types/IntValue.class
new file mode 100644
index 0000000..4a4ad00
--- /dev/null
+++ b/java/joelib2/util/types/IntValue.class
Binary files differ
diff --git a/java/joelib2/util/types/StackType.class b/java/joelib2/util/types/StackType.class
new file mode 100644
index 0000000..85b91e2
--- /dev/null
+++ b/java/joelib2/util/types/StackType.class
Binary files differ
diff --git a/java/joelib2/util/types/StringDouble.class b/java/joelib2/util/types/StringDouble.class
new file mode 100644
index 0000000..268cbc6
--- /dev/null
+++ b/java/joelib2/util/types/StringDouble.class
Binary files differ
diff --git a/java/joelib2/util/types/StringInt.class b/java/joelib2/util/types/StringInt.class
new file mode 100644
index 0000000..ab05f66
--- /dev/null
+++ b/java/joelib2/util/types/StringInt.class
Binary files differ
diff --git a/java/joelib2/util/types/StringObject.class b/java/joelib2/util/types/StringObject.class
new file mode 100644
index 0000000..056aefe
--- /dev/null
+++ b/java/joelib2/util/types/StringObject.class
Binary files differ
diff --git a/java/joelib2/util/types/StringPattern.class b/java/joelib2/util/types/StringPattern.class
new file mode 100644
index 0000000..953b5b9
--- /dev/null
+++ b/java/joelib2/util/types/StringPattern.class
Binary files differ
diff --git a/java/joelib2/util/types/StringString.class b/java/joelib2/util/types/StringString.class
new file mode 100644
index 0000000..18e2b88
--- /dev/null
+++ b/java/joelib2/util/types/StringString.class
Binary files differ
diff --git a/java/joelib2/util/types/StringValue.class b/java/joelib2/util/types/StringValue.class
new file mode 100644
index 0000000..e0e1396
--- /dev/null
+++ b/java/joelib2/util/types/StringValue.class
Binary files differ