blob: e200342da103799d173924d89e4449da334641bc (plain)

ofs	hex dump	ascii
0000	ca fe ba be 00 00 00 31 00 a9 0a 00 2b 00 57 09 00 25 00 58 0a 00 59 00 5a 0a 00 59 00 5b 07 00	.......1....+.W..%.X..Y.Z..Y.[..
0020	5c 0a 00 05 00 57 0a 00 5d 00 5e 0a 00 5f 00 60 0a 00 05 00 61 08 00 62 0a 00 05 00 63 08 00 64	\....W..].^.._.`....a..b....c..d
0040	0a 00 65 00 66 09 00 25 00 67 07 00 68 0a 00 0f 00 57 09 00 25 00 69 09 00 25 00 6a 09 00 25 00	..e.f..%.g..h....W..%.i..%.j..%.
0060	6b 09 00 25 00 6c 09 00 25 00 6d 08 00 6e 09 00 25 00 6f 08 00 70 0a 00 71 00 72 09 00 25 00 73	k..%.l..%.m..n..%.o..p..q.r..%.s
0080	08 00 74 09 00 25 00 75 0a 00 71 00 76 0a 00 71 00 77 0a 00 25 00 78 0a 00 71 00 79 09 00 25 00	..t..%.u..q.v..q.w..%.x..q.y..%.
00a0	7a 09 00 25 00 7b 0a 00 7c 00 7d 08 00 7e 07 00 7f 08 00 80 0a 00 7c 00 81 0a 00 25 00 57 0a 00	z..%.{..|.}..~........|....%.W..
00c0	25 00 82 0a 00 7c 00 83 07 00 84 07 00 85 07 00 86 01 00 06 6c 6f 67 67 65 72 01 00 1b 4c 6f 72	%....|..............logger...Lor
00e0	67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 3b 01 00 0b 72 65 73 69 64	g/apache/log4j/Category;...resid
0100	75 65 44 61 74 61 01 00 1f 4c 6a 6f 65 6c 69 62 32 2f 64 61 74 61 2f 42 61 73 69 63 52 65 73 69	ueData...Ljoelib2/data/BasicResi
0120	64 75 65 44 61 74 61 3b 01 00 10 44 45 46 41 55 4c 54 5f 52 45 53 4f 55 52 43 45 01 00 12 4c 6a	dueData;...DEFAULT_RESOURCE...Lj
0140	61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 0d 43 6f 6e 73 74 61 6e 74 56 61 6c 75 65	ava/lang/String;...ConstantValue
0160	01 00 06 56 45 4e 44 4f 52 01 00 0f 52 45 4c 45 41 53 45 5f 56 45 52 53 49 4f 4e 01 00 0c 52 45	...VENDOR...RELEASE_VERSION...RE
0180	4c 45 41 53 45 5f 44 41 54 45 01 00 09 5f 72 65 73 61 74 6f 6d 73 01 00 10 4c 6a 61 76 61 2f 75	LEASE_DATE..._resatoms...Ljava/u
01a0	74 69 6c 2f 4c 69 73 74 3b 01 00 09 5f 72 65 73 62 6f 6e 64 73 01 00 08 5f 72 65 73 6e 61 6d 65	til/List;..._resbonds..._resname
01c0	01 00 08 5f 76 61 74 6d 74 6d 70 01 00 05 5f 76 74 6d 70 01 00 0b 72 65 6c 65 61 73 65 44 61 74	..._vatmtmp..._vtmp...releaseDat
01e0	65 01 00 0e 72 65 6c 65 61 73 65 56 65 72 73 69 6f 6e 01 00 06 76 65 6e 64 6f 72 01 00 06 3c 69	e...releaseVersion...vendor...<i
0200	6e 69 74 3e 01 00 03 28 29 56 01 00 04 43 6f 64 65 01 00 08 69 6e 73 74 61 6e 63 65 01 00 21 28	nit>...()V...Code...instance..!(
0220	29 4c 6a 6f 65 6c 69 62 32 2f 64 61 74 61 2f 42 61 73 69 63 52 65 73 69 64 75 65 44 61 74 61 3b	)Ljoelib2/data/BasicResidueData;
0240	01 00 0b 61 73 73 69 67 6e 42 6f 6e 64 73 01 00 36 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63	...assignBonds..6(Ljoelib2/molec
0260	75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 4c 6a 6f 65 6c 69 62 32 2f 75 74 69 6c 2f 42 69 74 56 65	ule/Molecule;Ljoelib2/util/BitVe
0280	63 74 6f 72 3b 29 5a 01 00 16 67 65 74 52 65 6c 65 61 73 65 44 61 74 65 49 6e 74 65 72 6e 61 6c	ctor;)Z...getReleaseDateInternal
02a0	01 00 14 28 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 19 67 65 74 52 65 6c	...()Ljava/lang/String;...getRel
02c0	65 61 73 65 56 65 72 73 69 6f 6e 49 6e 74 65 72 6e 61 6c 01 00 11 67 65 74 56 65 6e 64 6f 72 49	easeVersionInternal...getVendorI
02e0	6e 74 65 72 6e 61 6c 01 00 08 6c 6f 6f 6b 75 70 42 4f 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67	nternal...lookupBO...(Ljava/lang
0300	2f 53 74 72 69 6e 67 3b 29 49 01 00 27 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b	/String;)I..'(Ljava/lang/String;
0320	4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 49 01 00 0a 6c 6f 6f 6b 75 70 54 79 70	Ljava/lang/String;)I...lookupTyp
0340	65 01 00 37 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 6f 65 6c 69 62 32	e..7(Ljava/lang/String;)Ljoelib2
0360	2f 75 74 69 6c 2f 74 79 70 65 73 2f 42 61 73 69 63 53 74 72 69 6e 67 49 6e 74 3b 01 00 0a 73 65	/util/types/BasicStringInt;...se
0380	74 52 65 73 4e 61 6d 65 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 5a	tResName...(Ljava/lang/String;)Z
03a0	01 00 09 70 61 72 73 65 4c 69 6e 65 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e	...parseLine...(Ljava/lang/Strin
03c0	67 3b 29 56 01 00 32 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 6f 65 6c	g;)V..2(Ljava/lang/String;)Ljoel
03e0	69 62 32 2f 75 74 69 6c 2f 74 79 70 65 73 2f 53 74 72 69 6e 67 49 6e 74 3b 01 00 08 3c 63 6c 69	ib2/util/types/StringInt;...<cli
0400	6e 69 74 3e 0c 00 41 00 42 0c 00 87 00 88 07 00 89 0c 00 44 00 8a 0c 00 8b 00 8c 01 00 17 6a 61	nit>..A.B..........D..........ja
0420	76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 07 00 8d 0c 00 8e 00 8f 07 00 90	va/lang/StringBuilder...........
0440	0c 00 91 00 49 0c 00 92 00 93 01 00 0d 2e 72 65 73 6f 75 72 63 65 46 69 6c 65 0c 00 94 00 49 01	....I.........resourceFile....I.
0460	00 1e 6a 6f 65 6c 69 62 32 2f 64 61 74 61 2f 70 6c 61 69 6e 2f 72 65 73 69 64 75 65 2e 74 78 74	..joelib2/data/plain/residue.txt
0480	07 00 95 0c 00 96 00 97 0c 00 98 00 33 01 00 10 6a 61 76 61 2f 75 74 69 6c 2f 56 65 63 74 6f 72	............3...java/util/Vector
04a0	0c 00 3b 00 39 0c 00 38 00 39 0c 00 3a 00 39 0c 00 3c 00 39 0c 00 3d 00 39 01 00 14 68 74 74 70	..;.9..8.9..:.9..<.9..=.9...http
04c0	3a 2f 2f 6a 6f 65 6c 69 62 2e 73 66 2e 6e 65 74 0c 00 40 00 33 01 00 10 24 52 65 76 69 73 69 6f	://joelib.sf.net..@.3...$Revisio
04e0	6e 3a 20 31 2e 33 20 24 07 00 99 0c 00 9a 00 9b 0c 00 3f 00 33 01 00 1c 24 44 61 74 65 3a 20 32	n:.1.3.$..........?.3...$Date:.2
0500	30 30 35 2f 30 32 2f 31 37 20 31 36 3a 34 38 3a 32 39 20 24 0c 00 3e 00 33 0c 00 44 00 9c 0c 00	005/02/17.16:48:29.$..>.3..D....
0520	9d 00 9e 0c 00 9f 00 42 0c 00 a0 00 a1 0c 00 30 00 31 0c 00 2e 00 2f 07 00 a2 0c 00 a3 00 a4 01	.......B.......0.1..../.........
0540	00 08 47 65 74 74 69 6e 67 20 01 00 1d 6a 6f 65 6c 69 62 32 2f 64 61 74 61 2f 42 61 73 69 63 52	..Getting....joelib2/data/BasicR
0560	65 73 69 64 75 65 44 61 74 61 01 00 0a 20 69 6e 73 74 61 6e 63 65 2e 0c 00 a5 00 a6 0c 00 4f 00	esidueData....instance........O.
0580	50 0c 00 a7 00 a8 01 00 1f 6a 6f 65 6c 69 62 32 2f 64 61 74 61 2f 41 62 73 74 72 61 63 74 44 61	P........joelib2/data/AbstractDa
05a0	74 61 48 6f 6c 64 65 72 01 00 27 6a 6f 65 6c 69 62 32 2f 64 61 74 61 2f 49 64 65 6e 74 69 66 69	taHolder..'joelib2/data/Identifi
05c0	65 72 48 61 72 64 44 65 70 65 6e 64 65 6e 63 69 65 73 01 00 18 6a 6f 65 6c 69 62 32 2f 64 61 74	erHardDependencies...joelib2/dat
05e0	61 2f 52 65 73 69 64 75 65 44 61 74 61 01 00 0b 69 6e 69 74 69 61 6c 69 7a 65 64 01 00 01 5a 01	a/ResidueData...initialized...Z.
0600	00 1f 77 73 69 2f 72 61 2f 74 6f 6f 6c 2f 42 61 73 69 63 50 72 6f 70 65 72 74 79 48 6f 6c 64 65	..wsi/ra/tool/BasicPropertyHolde
0620	72 01 00 23 28 29 4c 77 73 69 2f 72 61 2f 74 6f 6f 6c 2f 42 61 73 69 63 50 72 6f 70 65 72 74 79	r..#()Lwsi/ra/tool/BasicProperty
0640	48 6f 6c 64 65 72 3b 01 00 0d 67 65 74 50 72 6f 70 65 72 74 69 65 73 01 00 18 28 29 4c 6a 61 76	Holder;...getProperties...()Ljav
0660	61 2f 75 74 69 6c 2f 50 72 6f 70 65 72 74 69 65 73 3b 01 00 10 6a 61 76 61 2f 6c 61 6e 67 2f 4f	a/util/Properties;...java/lang/O
0680	62 6a 65 63 74 01 00 08 67 65 74 43 6c 61 73 73 01 00 13 28 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f	bject...getClass...()Ljava/lang/
06a0	43 6c 61 73 73 3b 01 00 0f 6a 61 76 61 2f 6c 61 6e 67 2f 43 6c 61 73 73 01 00 07 67 65 74 4e 61	Class;...java/lang/Class...getNa
06c0	6d 65 01 00 06 61 70 70 65 6e 64 01 00 2d 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67	me...append..-(Ljava/lang/String
06e0	3b 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 3b 01 00 08 74 6f	;)Ljava/lang/StringBuilder;...to
0700	53 74 72 69 6e 67 01 00 14 6a 61 76 61 2f 75 74 69 6c 2f 50 72 6f 70 65 72 74 69 65 73 01 00 0b	String...java/util/Properties...
0720	67 65 74 50 72 6f 70 65 72 74 79 01 00 38 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67	getProperty..8(Ljava/lang/String
0740	3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53	;Ljava/lang/String;)Ljava/lang/S
0760	74 72 69 6e 67 3b 01 00 0c 72 65 73 6f 75 72 63 65 46 69 6c 65 01 00 23 6a 6f 65 6c 69 62 32 2f	tring;...resourceFile..#joelib2/
0780	64 61 74 61 2f 49 64 65 6e 74 69 66 69 65 72 45 78 70 65 72 74 53 79 73 74 65 6d 01 00 0f 74 72	data/IdentifierExpertSystem...tr
07a0	61 6e 73 66 6f 72 6d 43 56 53 74 61 67 01 00 26 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69	ansformCVStag..&(Ljava/lang/Stri
07c0	6e 67 3b 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 27 28 29 4c 6a 6f 65 6c	ng;)Ljava/lang/String;..'()Ljoel
07e0	69 62 32 2f 64 61 74 61 2f 49 64 65 6e 74 69 66 69 65 72 45 78 70 65 72 74 53 79 73 74 65 6d 3b	ib2/data/IdentifierExpertSystem;
0800	01 00 12 61 64 64 48 61 72 64 43 6f 64 65 64 4b 65 72 6e 65 6c 01 00 2c 28 4c 6a 6f 65 6c 69 62	...addHardCodedKernel..,(Ljoelib
0820	32 2f 64 61 74 61 2f 49 64 65 6e 74 69 66 69 65 72 48 61 72 64 44 65 70 65 6e 64 65 6e 63 69 65	2/data/IdentifierHardDependencie
0840	73 3b 29 56 01 00 04 69 6e 69 74 01 00 12 61 64 64 53 6f 66 74 43 6f 64 65 64 4b 65 72 6e 65 6c	s;)V...init...addSoftCodedKernel
0860	01 00 2c 28 4c 6a 6f 65 6c 69 62 32 2f 64 61 74 61 2f 49 64 65 6e 74 69 66 69 65 72 53 6f 66 74	..,(Ljoelib2/data/IdentifierSoft
0880	44 65 70 65 6e 64 65 6e 63 69 65 73 3b 29 56 01 00 19 6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67	Dependencies;)V...org/apache/log
08a0	34 6a 2f 43 61 74 65 67 6f 72 79 01 00 0e 69 73 44 65 62 75 67 45 6e 61 62 6c 65 64 01 00 03 28	4j/Category...isDebugEnabled...(
08c0	29 5a 01 00 05 64 65 62 75 67 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b	)Z...debug...(Ljava/lang/Object;
08e0	29 56 01 00 0b 67 65 74 49 6e 73 74 61 6e 63 65 01 00 2f 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53	)V...getInstance../(Ljava/lang/S
0900	74 72 69 6e 67 3b 29 4c 6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72	tring;)Lorg/apache/log4j/Categor
0920	79 3b 00 21 00 25 00 2b 00 02 00 2c 00 2d 00 0e 00 0a 00 2e 00 2f 00 00 00 0a 00 30 00 31 00 00	y;.!.%.+...,.-......./.....0.1..
0940	00 1a 00 32 00 33 00 01 00 34 00 00 00 02 00 0c 00 1a 00 35 00 33 00 01 00 34 00 00 00 02 00 16	...2.3...4.........5.3...4......
0960	00 1a 00 36 00 33 00 01 00 34 00 00 00 02 00 18 00 1a 00 37 00 33 00 01 00 34 00 00 00 02 00 1b	...6.3...4.........7.3...4......
0980	00 02 00 38 00 39 00 00 00 02 00 3a 00 39 00 00 00 02 00 3b 00 39 00 00 00 02 00 3c 00 39 00 00	...8.9.....:.9.....;.9.....<.9..
09a0	00 02 00 3d 00 39 00 00 00 02 00 3e 00 33 00 00 00 02 00 3f 00 33 00 00 00 02 00 40 00 33 00 00	...=.9.....>.3.....?.3.....@.3..
09c0	00 0d 00 02 00 41 00 42 00 01 00 43 00 00 00 a1 00 04 00 02 00 00 00 95 2a b7 00 01 2a 03 b5 00	.....A.B...C............*...*...
09e0	02 b8 00 03 b6 00 04 4c 2a 2b bb 00 05 59 b7 00 06 2a b6 00 07 b6 00 08 b6 00 09 12 0a b6 00 09	.......L*+...Y...*..............
0a00	b6 00 0b 12 0c b6 00 0d b5 00 0e 2a bb 00 0f 59 b7 00 10 b5 00 11 2a bb 00 0f 59 b7 00 10 b5 00	...........*...Y......*...Y.....
0a20	12 2a bb 00 0f 59 b7 00 10 b5 00 13 2a bb 00 0f 59 b7 00 10 b5 00 14 2a bb 00 0f 59 b7 00 10 b5	.*...Y......*...Y......*...Y....
0a40	00 15 2a 12 16 b5 00 17 2a 12 18 b8 00 19 b5 00 1a 2a 12 1b b8 00 19 b5 00 1c b8 00 1d 2a b6 00	..*.....*........*...........*..
0a60	1e 2a b6 00 1f b8 00 1d 2a b6 00 20 b1 00 00 00 00 00 29 00 44 00 45 00 01 00 43 00 00 00 4c 00	.*......*.........).D.E...C...L.
0a80	03 00 00 00 00 00 40 b2 00 21 c7 00 39 b2 00 22 b6 00 23 99 00 26 b2 00 22 bb 00 05 59 b7 00 06	......@..!..9.."..#..&.."...Y...
0aa0	12 24 b6 00 09 13 00 25 b6 00 08 b6 00 09 12 26 b6 00 09 b6 00 0b b6 00 27 bb 00 25 59 b7 00 28	.$.....%.......&........'..%Y..(
0ac0	b3 00 21 b2 00 21 b0 00 00 00 00 00 01 00 46 00 47 00 01 00 43 00 00 00 0e 00 01 00 03 00 00 00	..!..!........F.G...C...........
0ae0	02 04 ac 00 00 00 00 00 01 00 48 00 49 00 01 00 43 00 00 00 11 00 01 00 01 00 00 00 05 2a b4 00	..........H.I...C............*..
0b00	1c b0 00 00 00 00 00 01 00 4a 00 49 00 01 00 43 00 00 00 11 00 01 00 01 00 00 00 05 2a b4 00 1a	.........J.I...C............*...
0b20	b0 00 00 00 00 00 01 00 4b 00 49 00 01 00 43 00 00 00 11 00 01 00 01 00 00 00 05 2a b4 00 17 b0	........K.I...C............*....
0b40	00 00 00 00 00 01 00 4c 00 4d 00 01 00 43 00 00 00 0e 00 01 00 02 00 00 00 02 03 ac 00 00 00 00	.......L.M...C..................
0b60	00 01 00 4c 00 4e 00 01 00 43 00 00 00 0e 00 01 00 03 00 00 00 02 03 ac 00 00 00 00 00 01 00 4f	...L.N...C.....................O
0b80	00 50 00 01 00 43 00 00 00 0e 00 01 00 02 00 00 00 02 01 b0 00 00 00 00 00 01 00 51 00 52 00 01	.P...C.....................Q.R..
0ba0	00 43 00 00 00 0e 00 01 00 02 00 00 00 02 03 ac 00 00 00 00 00 04 00 53 00 54 00 01 00 43 00 00	.C.....................S.T...C..
0bc0	00 0d 00 00 00 02 00 00 00 01 b1 00 00 00 00 10 41 00 4f 00 55 00 01 00 43 00 00 00 12 00 02 00	................A.O.U...C.......
0be0	02 00 00 00 06 2a 2b b6 00 29 b0 00 00 00 00 00 08 00 56 00 42 00 01 00 43 00 00 00 19 00 01 00	.....*+..)........V.B...C.......
0c00	00 00 00 00 0d 13 00 25 b6 00 08 b8 00 2a b3 00 22 b1 00 00 00 00 00 00	.......%.....*..".......