ofs | hex dump | ascii |
---|
0000 | ca fe ba be 00 00 00 31 00 c8 0a 00 40 00 4c 09 00 0c 00 4d 0a 00 4e 00 4f 07 00 50 0a 00 04 00 | .......1....@.L....M..N.O..P.... |
0020 | 4c 08 00 51 0a 00 04 00 52 0a 00 40 00 53 0a 00 54 00 55 0a 00 04 00 56 0a 00 4e 00 57 07 00 58 | L..Q....R..@.S..T.U....V..N.W..X |
0040 | 0a 00 0c 00 4c 0a 00 0c 00 59 0a 00 5a 00 5b 0a 00 5c 00 5d 08 00 5e 0a 00 5c 00 5f 0a 00 0c 00 | ....L....Y..Z.[..\.]..^..\._.... |
0060 | 60 0a 00 61 00 62 0a 00 61 00 63 08 00 64 08 00 65 0a 00 4e 00 66 07 00 67 0a 00 19 00 68 07 00 | `..a.b..a.c..d..e..N.f..g....h.. |
0080 | 69 0a 00 1b 00 4c 0a 00 1b 00 6a 07 00 6b 0a 00 1e 00 6c 07 00 6d 0a 00 20 00 6e 07 00 6f 0a 00 | i....L....j..k....l..m....n..o.. |
00a0 | 22 00 70 0a 00 1e 00 71 07 00 72 0a 00 25 00 6e 09 00 5a 00 73 0a 00 74 00 75 08 00 76 0a 00 74 | ".p....q..r..%.n..Z.s..t.u..v..t |
00c0 | 00 77 0a 00 1b 00 78 0b 00 79 00 7a 0b 00 79 00 7b 0a 00 1b 00 7c 08 00 7d 0a 00 04 00 7e 08 00 | .w....x..y.z..y.{....|..}....~.. |
00e0 | 7f 0a 00 80 00 81 0b 00 82 00 83 0a 00 80 00 84 08 00 85 08 00 86 07 00 87 0a 00 37 00 4c 08 00 | ...........................7.L.. |
0100 | 88 0a 00 37 00 89 08 00 8a 08 00 8b 08 00 8c 0a 00 37 00 56 0a 00 4e 00 8d 07 00 8e 01 00 06 6c | ...7.............7.V..N........l |
0120 | 6f 67 67 65 72 01 00 1b 4c 6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f | ogger...Lorg/apache/log4j/Catego |
0140 | 72 79 3b 01 00 06 3c 69 6e 69 74 3e 01 00 03 28 29 56 01 00 04 43 6f 64 65 01 00 04 6d 61 69 6e | ry;...<init>...()V...Code...main |
0160 | 01 00 16 28 5b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 56 01 00 04 74 65 73 74 | ...([Ljava/lang/String;)V...test |
0180 | 01 00 57 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 61 76 61 2f 6c 61 6e 67 | ..W(Ljava/lang/String;Ljava/lang |
01a0 | 2f 53 74 72 69 6e 67 3b 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 65 3b | /String;Ljoelib2/io/BasicIOType; |
01c0 | 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 65 3b 29 56 01 00 05 75 73 61 | Ljoelib2/io/BasicIOType;)V...usa |
01e0 | 67 65 01 00 08 3c 63 6c 69 6e 69 74 3e 0c 00 43 00 44 0c 00 41 00 42 07 00 8f 0c 00 90 00 91 01 | ge...<clinit>..C.D..A.B......... |
0200 | 00 17 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 01 00 0b 49 6e 69 74 | ..java/lang/StringBuilder...Init |
0220 | 69 61 6c 69 7a 65 20 0c 00 92 00 93 0c 00 94 00 95 07 00 96 0c 00 97 00 98 0c 00 99 00 98 0c 00 | ialize.......................... |
0240 | 9a 00 9b 01 00 20 6a 6f 65 6c 69 62 32 2f 65 78 61 6d 70 6c 65 2f 41 74 6f 6d 54 79 70 65 72 45 | ......joelib2/example/AtomTyperE |
0260 | 78 61 6d 70 6c 65 0c 00 4a 00 44 07 00 9c 0c 00 9d 00 9e 07 00 9f 0c 00 a0 00 a1 01 00 03 53 44 | xample..J.D...................SD |
0280 | 46 0c 00 a2 00 a3 0c 00 48 00 49 07 00 a4 0c 00 a0 00 a5 0c 00 a6 00 a7 01 00 1d 4d 6f 6c 65 63 | F.......H.I................Molec |
02a0 | 75 6c 65 20 63 61 6e 27 74 20 62 65 20 6c 6f 61 64 65 64 20 61 74 20 22 01 00 02 22 2e 0c 00 a8 | ule.can't.be.loaded.at."...".... |
02c0 | 00 9b 01 00 1c 6a 61 76 61 2f 69 6f 2f 42 79 74 65 41 72 72 61 79 49 6e 70 75 74 53 74 72 65 61 | .....java/io/ByteArrayInputStrea |
02e0 | 6d 0c 00 43 00 a9 01 00 24 6a 6f 65 6c 69 62 32 2f 73 6d 61 72 74 73 2f 50 72 6f 67 72 61 6d 6d | m..C....$joelib2/smarts/Programm |
0300 | 61 62 6c 65 41 74 6f 6d 54 79 70 65 72 0c 00 aa 00 ab 01 00 16 6a 6f 65 6c 69 62 32 2f 69 6f 2f | ableAtomTyper........joelib2/io/ |
0320 | 42 61 73 69 63 52 65 61 64 65 72 0c 00 43 00 ac 01 00 13 6a 61 76 61 2f 69 6f 2f 49 4f 45 78 63 | BasicReader..C.....java/io/IOExc |
0340 | 65 70 74 69 6f 6e 0c 00 ad 00 44 01 00 27 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 42 | eption....D..'joelib2/molecule/B |
0360 | 61 73 69 63 43 6f 6e 66 6f 72 6d 65 72 4d 6f 6c 65 63 75 6c 65 0c 00 43 00 ae 0c 00 af 00 b0 01 | asicConformerMolecule..C........ |
0380 | 00 13 6a 61 76 61 2f 6c 61 6e 67 2f 45 78 63 65 70 74 69 6f 6e 0c 00 b1 00 b2 07 00 b3 0c 00 b4 | ..java/lang/Exception........... |
03a0 | 00 9b 01 00 11 70 61 74 74 79 20 61 73 73 69 67 6e 6d 65 6e 74 3a 0c 00 b4 00 b5 0c 00 b6 00 b7 | .....patty.assignment:.......... |
03c0 | 07 00 b8 0c 00 b9 00 ba 0c 00 bb 00 bc 0c 00 bd 00 be 01 00 06 61 74 6f 6d 20 23 0c 00 92 00 bf | .....................atom.#..... |
03e0 | 01 00 01 20 07 00 c0 0c 00 a0 00 c1 07 00 c2 0c 00 c3 00 ba 0c 00 c4 00 be 01 00 0c 20 69 73 20 | .............................is. |
0400 | 6f 66 20 74 79 70 65 20 01 00 00 01 00 16 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 | of.type.......java/lang/StringBu |
0420 | 66 66 65 72 01 00 0c 0a 55 73 61 67 65 20 69 73 20 3a 20 0c 00 92 00 c5 01 00 0b 6a 61 76 61 20 | ffer....Usage.is.:.........java. |
0440 | 2d 63 70 20 2e 20 01 00 18 20 3c 53 44 46 20 66 69 6c 65 3e 20 3c 70 61 74 74 79 20 66 69 6c 65 | -cp.......<SDF.file>.<patty.file |
0460 | 3e 01 00 42 0a 0a 54 68 69 73 20 69 73 20 76 65 72 73 69 6f 6e 20 24 52 65 76 69 73 69 6f 6e 3a | >..B..This.is.version.$Revision: |
0480 | 20 31 2e 39 20 24 20 28 24 44 61 74 65 3a 20 32 30 30 35 2f 30 32 2f 31 37 20 31 36 3a 34 38 3a | .1.9.$.($Date:.2005/02/17.16:48: |
04a0 | 32 39 20 24 29 0a 0c 00 c6 00 c7 01 00 10 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 01 00 | 29.$).........java/lang/Object.. |
04c0 | 19 6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 01 00 0e 69 73 44 | .org/apache/log4j/Category...isD |
04e0 | 65 62 75 67 45 6e 61 62 6c 65 64 01 00 03 28 29 5a 01 00 06 61 70 70 65 6e 64 01 00 2d 28 4c 6a | ebugEnabled...()Z...append..-(Lj |
0500 | 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 | ava/lang/String;)Ljava/lang/Stri |
0520 | 6e 67 42 75 69 6c 64 65 72 3b 01 00 08 67 65 74 43 6c 61 73 73 01 00 13 28 29 4c 6a 61 76 61 2f | ngBuilder;...getClass...()Ljava/ |
0540 | 6c 61 6e 67 2f 43 6c 61 73 73 3b 01 00 0f 6a 61 76 61 2f 6c 61 6e 67 2f 43 6c 61 73 73 01 00 07 | lang/Class;...java/lang/Class... |
0560 | 67 65 74 4e 61 6d 65 01 00 14 28 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 | getName...()Ljava/lang/String;.. |
0580 | 08 74 6f 53 74 72 69 6e 67 01 00 05 64 65 62 75 67 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f | .toString...debug...(Ljava/lang/ |
05a0 | 4f 62 6a 65 63 74 3b 29 56 01 00 10 6a 61 76 61 2f 6c 61 6e 67 2f 53 79 73 74 65 6d 01 00 04 65 | Object;)V...java/lang/System...e |
05c0 | 78 69 74 01 00 04 28 49 29 56 01 00 1c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 | xit...(I)V...joelib2/io/BasicIOT |
05e0 | 79 70 65 48 6f 6c 64 65 72 01 00 08 69 6e 73 74 61 6e 63 65 01 00 20 28 29 4c 6a 6f 65 6c 69 62 | ypeHolder...instance...()Ljoelib |
0600 | 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 65 48 6f 6c 64 65 72 3b 01 00 09 67 65 74 49 4f 54 | 2/io/BasicIOTypeHolder;...getIOT |
0620 | 79 70 65 01 00 2c 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 6f 65 6c 69 | ype..,(Ljava/lang/String;)Ljoeli |
0640 | 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 65 3b 01 00 1f 77 73 69 2f 72 61 2f 74 6f 6f 6c | b2/io/BasicIOType;...wsi/ra/tool |
0660 | 2f 42 61 73 69 63 52 65 73 6f 75 72 63 65 4c 6f 61 64 65 72 01 00 23 28 29 4c 77 73 69 2f 72 61 | /BasicResourceLoader..#()Lwsi/ra |
0680 | 2f 74 6f 6f 6c 2f 42 61 73 69 63 52 65 73 6f 75 72 63 65 4c 6f 61 64 65 72 3b 01 00 1c 67 65 74 | /tool/BasicResourceLoader;...get |
06a0 | 42 79 74 65 73 46 72 6f 6d 52 65 73 6f 75 72 63 65 4c 6f 63 61 74 69 6f 6e 01 00 16 28 4c 6a 61 | BytesFromResourceLocation...(Lja |
06c0 | 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 5b 42 01 00 05 65 72 72 6f 72 01 00 05 28 5b 42 | va/lang/String;)[B...error...([B |
06e0 | 29 56 01 00 09 72 65 61 64 52 75 6c 65 73 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 | )V...readRules...(Ljava/lang/Str |
0700 | 69 6e 67 3b 29 5a 01 00 2b 28 4c 6a 61 76 61 2f 69 6f 2f 49 6e 70 75 74 53 74 72 65 61 6d 3b 4c | ing;)Z..+(Ljava/io/InputStream;L |
0720 | 6a 6f 65 6c 69 62 32 2f 69 6f 2f 49 4f 54 79 70 65 3b 29 56 01 00 0f 70 72 69 6e 74 53 74 61 63 | joelib2/io/IOType;)V...printStac |
0740 | 6b 54 72 61 63 65 01 00 29 28 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 49 4f 54 79 70 65 3b 4c 6a 6f | kTrace..)(Ljoelib2/io/IOType;Ljo |
0760 | 65 6c 69 62 32 2f 69 6f 2f 49 4f 54 79 70 65 3b 29 56 01 00 08 72 65 61 64 4e 65 78 74 01 00 1e | elib2/io/IOType;)V...readNext... |
0780 | 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 29 5a 01 00 | (Ljoelib2/molecule/Molecule;)Z.. |
07a0 | 03 6f 75 74 01 00 15 4c 6a 61 76 61 2f 69 6f 2f 50 72 69 6e 74 53 74 72 65 61 6d 3b 01 00 13 6a | .out...Ljava/io/PrintStream;...j |
07c0 | 61 76 61 2f 69 6f 2f 50 72 69 6e 74 53 74 72 65 61 6d 01 00 07 70 72 69 6e 74 6c 6e 01 00 15 28 | ava/io/PrintStream...println...( |
07e0 | 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 56 01 00 0b 61 73 73 69 67 6e 54 79 70 | Ljava/lang/String;)V...assignTyp |
0800 | 65 73 01 00 1f 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 | es...(Ljoelib2/molecule/Molecule |
0820 | 3b 29 5b 49 01 00 19 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 | ;)[I...joelib2/molecule/Molecule |
0840 | 01 00 0c 67 65 74 41 74 6f 6d 73 53 69 7a 65 01 00 03 28 29 49 01 00 07 67 65 74 41 74 6f 6d 01 | ...getAtomsSize...()I...getAtom. |
0860 | 00 1a 28 49 29 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 41 74 6f 6d 3b 01 00 11 67 | ..(I)Ljoelib2/molecule/Atom;...g |
0880 | 65 74 53 74 72 69 6e 67 46 72 6f 6d 54 79 70 65 01 00 15 28 49 29 4c 6a 61 76 61 2f 6c 61 6e 67 | etStringFromType...(I)Ljava/lang |
08a0 | 2f 53 74 72 69 6e 67 3b 01 00 1c 28 49 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 | /String;...(I)Ljava/lang/StringB |
08c0 | 75 69 6c 64 65 72 3b 01 00 1f 6a 6f 65 6c 69 62 32 2f 64 61 74 61 2f 42 61 73 69 63 45 6c 65 6d | uilder;...joelib2/data/BasicElem |
08e0 | 65 6e 74 48 6f 6c 64 65 72 01 00 23 28 29 4c 6a 6f 65 6c 69 62 32 2f 64 61 74 61 2f 42 61 73 69 | entHolder..#()Ljoelib2/data/Basi |
0900 | 63 45 6c 65 6d 65 6e 74 48 6f 6c 64 65 72 3b 01 00 15 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 | cElementHolder;...joelib2/molecu |
0920 | 6c 65 2f 41 74 6f 6d 01 00 0f 67 65 74 41 74 6f 6d 69 63 4e 75 6d 62 65 72 01 00 09 67 65 74 53 | le/Atom...getAtomicNumber...getS |
0940 | 79 6d 62 6f 6c 01 00 2c 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 61 76 | ymbol..,(Ljava/lang/String;)Ljav |
0960 | 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 66 66 65 72 3b 01 00 0b 67 65 74 49 6e 73 74 61 6e | a/lang/StringBuffer;...getInstan |
0980 | 63 65 01 00 2f 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6f 72 67 2f 61 70 | ce../(Ljava/lang/String;)Lorg/ap |
09a0 | 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 3b 00 21 00 0c 00 40 00 00 00 01 00 0a | ache/log4j/Category;.!...@...... |
09c0 | 00 41 00 42 00 00 00 05 00 01 00 43 00 44 00 01 00 45 00 00 00 39 00 03 00 01 00 00 00 2d 2a b7 | .A.B.......C.D...E...9.......-*. |
09e0 | 00 01 b2 00 02 b6 00 03 99 00 22 b2 00 02 bb 00 04 59 b7 00 05 12 06 b6 00 07 2a b6 00 08 b6 00 | .........."......Y........*..... |
0a00 | 09 b6 00 07 b6 00 0a b6 00 0b b1 00 00 00 00 00 09 00 46 00 47 00 01 00 45 00 00 00 44 00 06 00 | ..................F.G...E...D... |
0a20 | 02 00 00 00 38 bb 00 0c 59 b7 00 0d 4c 2a be 05 9f 00 0e 2b b6 00 0e 03 b8 00 0f a7 00 1d 2b 2a | ....8...Y...L*.....+..........+* |
0a40 | 03 32 2a 04 32 b8 00 10 12 11 b6 00 12 b8 00 10 12 11 b6 00 12 b6 00 13 03 b8 00 0f b1 00 00 00 | .2*.2........................... |
0a60 | 00 00 01 00 48 00 49 00 01 00 45 00 00 01 75 00 04 00 0f 00 00 01 59 b8 00 14 2b b6 00 15 3a 05 | ....H.I...E...u.......Y...+...:. |
0a80 | 19 05 c7 00 25 b2 00 02 bb 00 04 59 b7 00 05 12 16 b6 00 07 2b b6 00 07 12 17 b6 00 07 b6 00 0a | ....%......Y........+........... |
0aa0 | b6 00 18 04 b8 00 0f bb 00 19 59 19 05 b7 00 1a 3a 06 bb 00 1b 59 b7 00 1c 3a 07 19 07 2c b6 00 | ..........Y.....:....Y...:...,.. |
0ac0 | 1d 9a 00 07 04 b8 00 0f 01 3a 08 bb 00 1e 59 19 06 2d b7 00 1f 3a 08 a7 00 0e 3a 09 19 09 b6 00 | .........:....Y..-...:....:..... |
0ae0 | 21 04 b8 00 0f bb 00 22 59 2d 19 04 b7 00 23 3a 09 19 08 19 09 b6 00 24 9a 00 06 a7 00 d4 a7 00 | !......"Y-....#:.......$........ |
0b00 | 0e 3a 0b 19 0b b6 00 26 04 b8 00 0f b2 00 27 19 09 b6 00 28 b2 00 27 12 29 b6 00 2a 19 07 19 09 | .:.....&......'....(..'.)..*.... |
0b20 | b6 00 2b 3a 0a 03 36 0c 15 0c 19 09 b9 00 2c 01 00 a2 00 9b 15 0c 04 60 36 0b 19 09 15 0b b9 00 | ..+:..6.......,........`6....... |
0b40 | 2d 02 00 3a 0d 19 07 19 0a 15 0c 2e b6 00 2e 3a 0e 19 0e c7 00 35 b2 00 27 bb 00 04 59 b7 00 05 | -..:...........:.....5..'...Y... |
0b60 | 12 2f b6 00 07 15 0b b6 00 30 12 31 b6 00 07 b8 00 32 19 0d b9 00 33 01 00 b6 00 34 b6 00 07 b6 | ./.......0.1.....2....3....4.... |
0b80 | 00 0a b6 00 2a a7 00 41 b2 00 27 bb 00 04 59 b7 00 05 12 2f b6 00 07 15 0b b6 00 30 12 31 b6 00 | ....*..A..'...Y..../.......0.1.. |
0ba0 | 07 b8 00 32 19 0d b9 00 33 01 00 b6 00 34 b6 00 07 12 35 b6 00 07 19 0e b6 00 07 12 36 b6 00 07 | ...2....3....4....5.........6... |
0bc0 | b6 00 0a b6 00 2a 84 0c 01 a7 ff 5f a7 ff 25 b1 00 02 00 54 00 60 00 63 00 20 00 7a 00 84 00 8a | .....*....._..%....T.`.c...z.... |
0be0 | 00 25 00 00 00 01 00 4a 00 44 00 01 00 45 00 00 00 4d 00 02 00 03 00 00 00 41 bb 00 37 59 b7 00 | .%.....J.D...E...M.......A..7Y.. |
0c00 | 38 4c 2a b6 00 08 b6 00 09 4d 2b 12 39 b6 00 3a 57 2b 12 3b b6 00 3a 57 2b 2c b6 00 3a 57 2b 12 | 8L*......M+.9..:W+.;..:W+,..:W+. |
0c20 | 3c b6 00 3a 57 2b 12 3d b6 00 3a 57 b2 00 27 2b b6 00 3e b6 00 2a 03 b8 00 0f b1 00 00 00 00 00 | <..:W+.=..:W..'+..>..*.......... |
0c40 | 08 00 4b 00 44 00 01 00 45 00 00 00 19 00 01 00 00 00 00 00 0d 13 00 0c b6 00 09 b8 00 3f b3 00 | ..K.D...E....................?.. |
0c60 | 02 b1 00 00 00 00 00 00 | ........ |