summaryrefslogtreecommitdiff
path: root/java/joelib2/example/SSSRFinderExample.class
blob: 5af311e97c796f76f9c5522fc86704ecac753c72 (plain)
ofshex dumpascii
0000 ca fe ba be 00 00 00 31 00 c6 0a 00 3e 00 4a 07 00 4b 0a 00 02 00 4a 0a 00 02 00 4c 0a 00 4d 00 .......1....>.J..K....J....L..M.
0020 4e 0a 00 4f 00 50 08 00 51 0a 00 4f 00 52 0a 00 02 00 53 0a 00 54 00 55 0a 00 54 00 56 09 00 02 N..O.P..Q..O.R....S..T.U..T.V...
0040 00 57 07 00 58 0a 00 0d 00 4a 08 00 59 0a 00 0d 00 5a 08 00 5b 0a 00 0d 00 5c 0a 00 5d 00 5e 07 .W..X....J..Y....Z..[....\..].^.
0060 00 5f 0a 00 14 00 60 07 00 61 0a 00 16 00 62 07 00 63 0a 00 18 00 64 07 00 65 0a 00 1a 00 66 0a ._....`..a....b..c....d..e....f.
0080 00 16 00 67 07 00 68 0a 00 1d 00 64 09 00 4d 00 69 0a 00 6a 00 6b 0b 00 6c 00 6d 0a 00 6e 00 6f ...g..h....d..M.i..j.k..l.m..n.o
00a0 0b 00 70 00 71 0b 00 70 00 72 07 00 73 0b 00 25 00 74 08 00 75 0a 00 0d 00 76 08 00 77 0a 00 6a ..p.q..p.r..s..%.t..u....v..w..j
00c0 00 78 08 00 79 08 00 7a 0a 00 6a 00 7b 0b 00 6c 00 7c 0b 00 7d 00 7e 0a 00 6e 00 7f 08 00 80 07 .x..y..z..j.{..l.|..}.~..n......
00e0 00 81 0a 00 32 00 4a 0a 00 3e 00 82 0a 00 83 00 84 08 00 85 0a 00 32 00 86 08 00 87 08 00 88 08 ....2.J..>............2.........
0100 00 89 0a 00 32 00 5c 07 00 8a 0a 00 5d 00 8b 07 00 8c 01 00 06 6c 6f 67 67 65 72 01 00 1b 4c 6f ....2.\.....]........logger...Lo
0120 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 3b 01 00 06 3c 69 6e 69 rg/apache/log4j/Category;...<ini
0140 74 3e 01 00 03 28 29 56 01 00 04 43 6f 64 65 01 00 04 6d 61 69 6e 01 00 16 28 5b 4c 6a 61 76 61 t>...()V...Code...main...([Ljava
0160 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 56 01 00 04 74 65 73 74 01 00 45 28 4c 6a 61 76 61 2f /lang/String;)V...test..E(Ljava/
0180 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 lang/String;Ljoelib2/io/BasicIOT
01a0 79 70 65 3b 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 65 3b 29 56 01 00 ype;Ljoelib2/io/BasicIOType;)V..
01c0 05 75 73 61 67 65 01 00 08 3c 63 6c 69 6e 69 74 3e 0c 00 41 00 42 01 00 21 6a 6f 65 6c 69 62 32 .usage...<clinit>..A.B..!joelib2
01e0 2f 65 78 61 6d 70 6c 65 2f 53 53 53 52 46 69 6e 64 65 72 45 78 61 6d 70 6c 65 0c 00 48 00 42 07 /example/SSSRFinderExample..H.B.
0200 00 8d 0c 00 8e 00 8f 07 00 90 0c 00 91 00 92 01 00 03 53 44 46 0c 00 93 00 94 0c 00 46 00 47 07 ..................SDF.......F.G.
0220 00 95 0c 00 91 00 96 0c 00 97 00 98 0c 00 3f 00 40 01 00 17 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 ..............?.@...java/lang/St
0240 72 69 6e 67 42 75 69 6c 64 65 72 01 00 1d 4d 6f 6c 65 63 75 6c 65 20 63 61 6e 27 74 20 62 65 20 ringBuilder...Molecule.can't.be.
0260 6c 6f 61 64 65 64 20 61 74 20 22 0c 00 99 00 9a 01 00 02 22 2e 0c 00 9b 00 9c 07 00 9d 0c 00 9e loaded.at."........"............
0280 00 9f 01 00 1c 6a 61 76 61 2f 69 6f 2f 42 79 74 65 41 72 72 61 79 49 6e 70 75 74 53 74 72 65 61 .....java/io/ByteArrayInputStrea
02a0 6d 0c 00 41 00 a0 01 00 16 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 52 65 61 64 65 72 0c m..A.....joelib2/io/BasicReader.
02c0 00 41 00 a1 01 00 13 6a 61 76 61 2f 69 6f 2f 49 4f 45 78 63 65 70 74 69 6f 6e 0c 00 a2 00 42 01 .A.....java/io/IOException....B.
02e0 00 27 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 42 61 73 69 63 43 6f 6e 66 6f 72 6d 65 .'joelib2/molecule/BasicConforme
0300 72 4d 6f 6c 65 63 75 6c 65 0c 00 41 00 a3 0c 00 a4 00 a5 01 00 13 6a 61 76 61 2f 6c 61 6e 67 2f rMolecule..A..........java/lang/
0320 45 78 63 65 70 74 69 6f 6e 0c 00 a6 00 a7 07 00 a8 0c 00 a9 00 9f 07 00 aa 0c 00 ab 00 ac 07 00 Exception.......................
0340 ad 0c 00 91 00 ae 07 00 af 0c 00 b0 00 b1 0c 00 b2 00 b3 01 00 11 6a 6f 65 6c 69 62 32 2f 72 69 ......................joelib2/ri
0360 6e 67 2f 52 69 6e 67 0c 00 b4 00 b5 01 00 06 72 69 6e 67 20 23 0c 00 99 00 b6 01 00 01 3a 0c 00 ng/Ring........ring.#........:..
0380 b7 00 b8 01 00 01 20 01 00 00 0c 00 a9 00 b8 0c 00 b9 00 ba 07 00 bb 0c 00 bc 00 b1 0c 00 bd 00 ................................
03a0 be 01 00 01 0a 01 00 16 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 66 66 65 72 0c 00 ........java/lang/StringBuffer..
03c0 bf 00 c0 07 00 c1 0c 00 c2 00 9c 01 00 0c 0a 55 73 61 67 65 20 69 73 20 3a 20 0c 00 99 00 c3 01 ...............Usage.is.:.......
03e0 00 0b 6a 61 76 61 20 2d 63 70 20 2e 20 01 00 1c 20 3c 53 44 46 20 66 69 6c 65 3e 20 3c 53 4d 41 ..java.-cp.......<SDF.file>.<SMA
0400 52 54 53 20 70 61 74 74 65 72 6e 3e 01 00 42 0a 0a 54 68 69 73 20 69 73 20 76 65 72 73 69 6f 6e RTS.pattern>..B..This.is.version
0420 20 24 52 65 76 69 73 69 6f 6e 3a 20 31 2e 39 20 24 20 28 24 44 61 74 65 3a 20 32 30 30 35 2f 30 .$Revision:.1.9.$.($Date:.2005/0
0440 32 2f 31 37 20 31 36 3a 34 38 3a 32 39 20 24 29 0a 01 00 2c 6a 6f 65 6c 69 62 32 2f 65 78 61 6d 2/17.16:48:29.$)...,joelib2/exam
0460 70 6c 65 2f 45 78 74 65 72 6e 61 6c 50 72 6f 63 65 73 73 46 69 6c 74 65 72 45 78 61 6d 70 6c 65 ple/ExternalProcessFilterExample
0480 0c 00 c4 00 c5 01 00 10 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 01 00 10 6a 61 76 61 2f ........java/lang/Object...java/
04a0 6c 61 6e 67 2f 53 79 73 74 65 6d 01 00 04 65 78 69 74 01 00 04 28 49 29 56 01 00 1c 6a 6f 65 6c lang/System...exit...(I)V...joel
04c0 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 65 48 6f 6c 64 65 72 01 00 08 69 6e 73 74 61 ib2/io/BasicIOTypeHolder...insta
04e0 6e 63 65 01 00 20 28 29 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 65 48 nce...()Ljoelib2/io/BasicIOTypeH
0500 6f 6c 64 65 72 3b 01 00 09 67 65 74 49 4f 54 79 70 65 01 00 2c 28 4c 6a 61 76 61 2f 6c 61 6e 67 older;...getIOType..,(Ljava/lang
0520 2f 53 74 72 69 6e 67 3b 29 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 65 /String;)Ljoelib2/io/BasicIOType
0540 3b 01 00 1f 77 73 69 2f 72 61 2f 74 6f 6f 6c 2f 42 61 73 69 63 52 65 73 6f 75 72 63 65 4c 6f 61 ;...wsi/ra/tool/BasicResourceLoa
0560 64 65 72 01 00 23 28 29 4c 77 73 69 2f 72 61 2f 74 6f 6f 6c 2f 42 61 73 69 63 52 65 73 6f 75 72 der..#()Lwsi/ra/tool/BasicResour
0580 63 65 4c 6f 61 64 65 72 3b 01 00 1c 67 65 74 42 79 74 65 73 46 72 6f 6d 52 65 73 6f 75 72 63 65 ceLoader;...getBytesFromResource
05a0 4c 6f 63 61 74 69 6f 6e 01 00 16 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 5b Location...(Ljava/lang/String;)[
05c0 42 01 00 06 61 70 70 65 6e 64 01 00 2d 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b B...append..-(Ljava/lang/String;
05e0 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 3b 01 00 08 74 6f 53 )Ljava/lang/StringBuilder;...toS
0600 74 72 69 6e 67 01 00 14 28 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 19 6f tring...()Ljava/lang/String;...o
0620 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 01 00 05 65 72 72 6f 72 rg/apache/log4j/Category...error
0640 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 29 56 01 00 05 28 5b 42 29 56 ...(Ljava/lang/Object;)V...([B)V
0660 01 00 2b 28 4c 6a 61 76 61 2f 69 6f 2f 49 6e 70 75 74 53 74 72 65 61 6d 3b 4c 6a 6f 65 6c 69 62 ..+(Ljava/io/InputStream;Ljoelib
0680 32 2f 69 6f 2f 49 4f 54 79 70 65 3b 29 56 01 00 0f 70 72 69 6e 74 53 74 61 63 6b 54 72 61 63 65 2/io/IOType;)V...printStackTrace
06a0 01 00 29 28 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 49 4f 54 79 70 65 3b 4c 6a 6f 65 6c 69 62 32 2f ..)(Ljoelib2/io/IOType;Ljoelib2/
06c0 69 6f 2f 49 4f 54 79 70 65 3b 29 56 01 00 08 72 65 61 64 4e 65 78 74 01 00 1e 28 4c 6a 6f 65 6c io/IOType;)V...readNext...(Ljoel
06e0 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 29 5a 01 00 03 6f 75 74 01 00 ib2/molecule/Molecule;)Z...out..
0700 15 4c 6a 61 76 61 2f 69 6f 2f 50 72 69 6e 74 53 74 72 65 61 6d 3b 01 00 13 6a 61 76 61 2f 69 6f .Ljava/io/PrintStream;...java/io
0720 2f 50 72 69 6e 74 53 74 72 65 61 6d 01 00 07 70 72 69 6e 74 6c 6e 01 00 19 6a 6f 65 6c 69 62 32 /PrintStream...println...joelib2
0740 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 01 00 07 67 65 74 53 53 53 52 01 00 12 28 /molecule/Molecule...getSSSR...(
0760 29 4c 6a 61 76 61 2f 75 74 69 6c 2f 4c 69 73 74 3b 01 00 1f 6a 6f 65 6c 69 62 32 2f 64 61 74 61 )Ljava/util/List;...joelib2/data
0780 2f 42 61 73 69 63 45 6c 65 6d 65 6e 74 48 6f 6c 64 65 72 01 00 23 28 29 4c 6a 6f 65 6c 69 62 32 /BasicElementHolder..#()Ljoelib2
07a0 2f 64 61 74 61 2f 42 61 73 69 63 45 6c 65 6d 65 6e 74 48 6f 6c 64 65 72 3b 01 00 0e 6a 61 76 61 /data/BasicElementHolder;...java
07c0 2f 75 74 69 6c 2f 4c 69 73 74 01 00 04 73 69 7a 65 01 00 03 28 29 49 01 00 03 67 65 74 01 00 15 /util/List...size...()I...get...
07e0 28 49 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 01 00 0e 67 65 74 41 74 6f 6d 49 (I)Ljava/lang/Object;...getAtomI
0800 6e 64 69 63 65 73 01 00 04 28 29 5b 49 01 00 1c 28 49 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 ndices...()[I...(I)Ljava/lang/St
0820 72 69 6e 67 42 75 69 6c 64 65 72 3b 01 00 05 70 72 69 6e 74 01 00 15 28 4c 6a 61 76 61 2f 6c 61 ringBuilder;...print...(Ljava/la
0840 6e 67 2f 53 74 72 69 6e 67 3b 29 56 01 00 07 67 65 74 41 74 6f 6d 01 00 1a 28 49 29 4c 6a 6f 65 ng/String;)V...getAtom...(I)Ljoe
0860 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 41 74 6f 6d 3b 01 00 15 6a 6f 65 6c 69 62 32 2f 6d 6f lib2/molecule/Atom;...joelib2/mo
0880 6c 65 63 75 6c 65 2f 41 74 6f 6d 01 00 0f 67 65 74 41 74 6f 6d 69 63 4e 75 6d 62 65 72 01 00 09 lecule/Atom...getAtomicNumber...
08a0 67 65 74 53 79 6d 62 6f 6c 01 00 15 28 49 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 getSymbol...(I)Ljava/lang/String
08c0 3b 01 00 08 67 65 74 43 6c 61 73 73 01 00 13 28 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 43 6c 61 73 ;...getClass...()Ljava/lang/Clas
08e0 73 3b 01 00 0f 6a 61 76 61 2f 6c 61 6e 67 2f 43 6c 61 73 73 01 00 07 67 65 74 4e 61 6d 65 01 00 s;...java/lang/Class...getName..
0900 2c 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f ,(Ljava/lang/String;)Ljava/lang/
0920 53 74 72 69 6e 67 42 75 66 66 65 72 3b 01 00 0b 67 65 74 49 6e 73 74 61 6e 63 65 01 00 2f 28 4c StringBuffer;...getInstance../(L
0940 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f java/lang/String;)Lorg/apache/lo
0960 67 34 6a 2f 43 61 74 65 67 6f 72 79 3b 00 21 00 02 00 3e 00 00 00 01 00 0a 00 3f 00 40 00 00 00 g4j/Category;.!...>.......?.@...
0980 05 00 01 00 41 00 42 00 01 00 43 00 00 00 11 00 01 00 01 00 00 00 05 2a b7 00 01 b1 00 00 00 00 ....A.B...C............*........
09a0 00 09 00 44 00 45 00 01 00 43 00 00 00 41 00 05 00 02 00 00 00 35 bb 00 02 59 b7 00 03 4c 2a be ...D.E...C...A.......5...Y...L*.
09c0 04 9f 00 0e 2b b6 00 04 03 b8 00 05 a7 00 1a 2b 2a 03 32 b8 00 06 12 07 b6 00 08 b8 00 06 12 07 ....+..........+*.2.............
09e0 b6 00 08 b6 00 09 03 b8 00 05 b1 00 00 00 00 00 01 00 46 00 47 00 01 00 43 00 00 01 a3 00 04 00 ..................F.G...C.......
0a00 0f 00 00 01 87 b8 00 0a 2b b6 00 0b 3a 04 19 04 c7 00 25 b2 00 0c bb 00 0d 59 b7 00 0e 12 0f b6 ........+...:.....%......Y......
0a20 00 10 2b b6 00 10 12 11 b6 00 10 b6 00 12 b6 00 13 04 b8 00 05 bb 00 14 59 19 04 b7 00 15 3a 05 ..+.....................Y.....:.
0a40 01 3a 06 bb 00 16 59 19 05 2c b7 00 17 3a 06 a7 00 0e 3a 07 19 07 b6 00 19 04 b8 00 05 bb 00 1a .:....Y..,...:....:.............
0a60 59 2c 2d b7 00 1b 3a 07 19 06 19 07 b6 00 1c 9a 00 06 a7 01 19 a7 00 0e 3a 08 19 08 b6 00 1e 04 Y,-...:.................:.......
0a80 b8 00 05 b2 00 1f 19 07 b6 00 20 19 07 b9 00 21 01 00 3a 08 b8 00 22 3a 0c 03 36 0d 15 0d 19 08 ...............!..:...":..6.....
0aa0 b9 00 23 01 00 a2 00 e3 19 08 15 0d b9 00 24 02 00 c0 00 25 3a 09 19 09 b9 00 26 01 00 3a 0a b2 ..#...........$....%:.....&..:..
0ac0 00 1f bb 00 0d 59 b7 00 0e 12 27 b6 00 10 15 0d 04 60 b6 00 28 12 29 b6 00 10 b6 00 12 b6 00 2a .....Y....'......`..(.)........*
0ae0 03 36 0e 15 0e 19 0a be a2 00 26 b2 00 1f bb 00 0d 59 b7 00 0e 12 2b b6 00 10 19 0a 15 0e 2e b6 .6........&......Y....+.........
0b00 00 28 b6 00 12 b6 00 2a 84 0e 01 a7 ff d8 b2 00 1f 12 2c b6 00 2d b2 00 1f bb 00 0d 59 b7 00 0e .(.....*..........,..-......Y...
0b20 12 27 b6 00 10 15 0d 04 60 b6 00 28 12 29 b6 00 10 b6 00 12 b6 00 2a 03 36 0e 15 0e 19 0a be a2 .'......`..(.)........*.6.......
0b40 00 3b 19 07 19 0a 15 0e 2e b9 00 2e 02 00 3a 0b b2 00 1f bb 00 0d 59 b7 00 0e 12 2b b6 00 10 19 .;............:.......Y....+....
0b60 0c 19 0b b9 00 2f 01 00 b6 00 30 b6 00 10 b6 00 12 b6 00 2a 84 0e 01 a7 ff c3 b2 00 1f 12 31 b6 ...../....0........*..........1.
0b80 00 2d 84 0d 01 a7 ff 17 a7 fe e0 b1 00 02 00 3e 00 4a 00 4d 00 18 00 63 00 6d 00 73 00 1d 00 00 .-.............>.J.M...c.m.s....
0ba0 00 01 00 48 00 42 00 01 00 43 00 00 00 4d 00 02 00 03 00 00 00 41 bb 00 32 59 b7 00 33 4c 2a b6 ...H.B...C...M.......A..2Y..3L*.
0bc0 00 34 b6 00 35 4d 2b 12 36 b6 00 37 57 2b 12 38 b6 00 37 57 2b 2c b6 00 37 57 2b 12 39 b6 00 37 .4..5M+.6..7W+.8..7W+,..7W+.9..7
0be0 57 2b 12 3a b6 00 37 57 b2 00 1f 2b b6 00 3b b6 00 2d 03 b8 00 05 b1 00 00 00 00 00 08 00 49 00 W+.:..7W...+..;..-............I.
0c00 42 00 01 00 43 00 00 00 19 00 01 00 00 00 00 00 0d 13 00 3c b6 00 35 b8 00 3d b3 00 0c b1 00 00 B...C..............<..5..=......
0c20 00 00 00 00 ....