summaryrefslogtreecommitdiff
path: root/java/joelib2/feature/result/SMILESResult.class
blob: 24d66fd3e9f05957647cfcc93df247e15578ae1b (plain)
ofshex dumpascii
0000 ca fe ba be 00 00 00 31 00 7e 0a 00 1f 00 42 0a 00 43 00 44 0a 00 45 00 46 0a 00 06 00 47 0a 00 .......1.~....B..C.D..E.F....G..
0020 06 00 48 07 00 49 0a 00 06 00 42 0a 00 06 00 4a 0a 00 1f 00 4b 09 00 06 00 4c 0b 00 0c 00 4d 07 ..H..I....B....J....K....L....M.
0040 00 4e 08 00 4f 0b 00 50 00 51 0b 00 50 00 52 07 00 53 0a 00 06 00 54 07 00 55 0a 00 12 00 42 0a .N..O..P.Q..P.R..S....T..U....B.
0060 00 56 00 57 07 00 58 0a 00 15 00 42 0a 00 15 00 59 07 00 5a 0a 00 18 00 5b 0a 00 15 00 5c 0a 00 .V.W..X....B....Y..Z....[....\..
0080 15 00 5d 0a 00 18 00 5e 0a 00 5f 00 60 09 00 06 00 61 07 00 62 07 00 63 07 00 64 07 00 65 01 00 ..]....^.._.`....a..b..c..d..e..
00a0 10 73 65 72 69 61 6c 56 65 72 73 69 6f 6e 55 49 44 01 00 01 4a 01 00 0d 43 6f 6e 73 74 61 6e 74 .serialVersionUID...J...Constant
00c0 56 61 6c 75 65 05 00 00 00 00 00 00 00 01 01 00 06 6c 6f 67 67 65 72 01 00 1b 4c 6f 72 67 2f 61 Value............logger...Lorg/a
00e0 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 3b 01 00 0b 62 61 73 69 63 46 6f 72 pache/log4j/Category;...basicFor
0100 6d 61 74 01 00 12 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 08 6d 6f 6c 65 63 mat...Ljava/lang/String;...molec
0120 75 6c 65 01 00 1b 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 ule...Ljoelib2/molecule/Molecule
0140 3b 01 00 06 3c 69 6e 69 74 3e 01 00 03 28 29 56 01 00 04 43 6f 64 65 01 00 05 63 6c 6f 6e 65 01 ;...<init>...()V...Code...clone.
0160 00 14 28 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 01 00 4c 28 4c 6a 6f 65 6c 69 ..()Ljava/lang/Object;..L(Ljoeli
0180 62 32 2f 66 65 61 74 75 72 65 2f 72 65 73 75 6c 74 2f 53 4d 49 4c 45 53 52 65 73 75 6c 74 3b 29 b2/feature/result/SMILESResult;)
01a0 4c 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 72 65 73 75 6c 74 2f 53 4d 49 4c 45 53 52 65 Ljoelib2/feature/result/SMILESRe
01c0 73 75 6c 74 3b 01 00 11 66 6f 72 6d 61 74 44 65 73 63 72 69 70 74 69 6f 6e 01 00 27 28 4c 6a 6f sult;...formatDescription..'(Ljo
01e0 65 6c 69 62 32 2f 69 6f 2f 49 4f 54 79 70 65 3b 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 elib2/io/IOType;)Ljava/lang/Stri
0200 6e 67 3b 01 00 0c 66 72 6f 6d 50 61 69 72 44 61 74 61 01 00 37 28 4c 6a 6f 65 6c 69 62 32 2f 69 ng;...fromPairData..7(Ljoelib2/i
0220 6f 2f 49 4f 54 79 70 65 3b 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 74 79 70 65 73 o/IOType;Ljoelib2/molecule/types
0240 2f 50 61 69 72 44 61 74 61 3b 29 5a 01 00 0a 66 72 6f 6d 53 74 72 69 6e 67 01 00 28 28 4c 6a 6f /PairData;)Z...fromString..((Ljo
0260 65 6c 69 62 32 2f 69 6f 2f 49 4f 54 79 70 65 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e elib2/io/IOType;Ljava/lang/Strin
0280 67 3b 29 5a 01 00 0b 67 65 74 4d 6f 6c 65 63 75 6c 65 01 00 1d 28 29 4c 6a 6f 65 6c 69 62 32 2f g;)Z...getMolecule...()Ljoelib2/
02a0 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 01 00 04 69 6e 69 74 01 00 15 28 4c 6a 61 molecule/Molecule;...init...(Lja
02c0 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 5a 01 00 0b 73 65 74 4d 6f 6c 65 63 75 6c 65 01 va/lang/String;)Z...setMolecule.
02e0 00 1e 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 29 56 ..(Ljoelib2/molecule/Molecule;)V
0300 01 00 08 74 6f 53 74 72 69 6e 67 01 00 08 3c 63 6c 69 6e 69 74 3e 0c 00 2e 00 2f 07 00 66 0c 00 ...toString...<clinit>..../..f..
0320 67 00 68 07 00 69 0c 00 6a 00 6b 0c 00 6c 00 6d 0c 00 6e 00 6f 01 00 23 6a 6f 65 6c 69 62 32 2f g.h..i..j.k..l.m..n.o..#joelib2/
0340 66 65 61 74 75 72 65 2f 72 65 73 75 6c 74 2f 53 4d 49 4c 45 53 52 65 73 75 6c 74 0c 00 31 00 33 feature/result/SMILESResult..1.3
0360 0c 00 31 00 70 0c 00 2c 00 2d 0c 00 31 00 32 01 00 19 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 ..1.p..,.-..1.2...joelib2/molecu
0380 6c 65 2f 4d 6f 6c 65 63 75 6c 65 01 00 0e 53 4d 49 4c 45 53 20 70 61 74 74 65 72 6e 07 00 71 0c le/Molecule...SMILES.pattern..q.
03a0 00 72 00 6b 0c 00 73 00 32 01 00 10 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 0c 00 38 00 .r.k..s.2...java/lang/String..8.
03c0 39 01 00 27 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 42 61 73 69 63 43 6f 6e 66 6f 72 9..'joelib2/molecule/BasicConfor
03e0 6d 65 72 4d 6f 6c 65 63 75 6c 65 07 00 74 0c 00 75 00 76 01 00 1e 6a 6f 65 6c 69 62 32 2f 73 6d merMolecule..t..u.v...joelib2/sm
0400 69 6c 65 73 2f 53 4d 49 4c 45 53 47 65 6e 65 72 61 74 6f 72 0c 00 3c 00 2f 01 00 16 6a 61 76 61 iles/SMILESGenerator..<./...java
0420 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 66 66 65 72 0c 00 2e 00 77 0c 00 78 00 3f 0c 00 79 00 /lang/StringBuffer....w..x.?..y.
0440 7a 0c 00 40 00 6b 07 00 7b 0c 00 7c 00 7d 0c 00 28 00 29 01 00 27 6a 6f 65 6c 69 62 32 2f 6d 6f z..@.k..{..|.}..(.)..'joelib2/mo
0460 6c 65 63 75 6c 65 2f 74 79 70 65 73 2f 42 61 73 69 63 50 61 69 72 44 61 74 61 43 4d 4c 01 00 13 lecule/types/BasicPairDataCML...
0480 6a 61 76 61 2f 6c 61 6e 67 2f 43 6c 6f 6e 65 61 62 6c 65 01 00 1d 6a 6f 65 6c 69 62 32 2f 66 65 java/lang/Cloneable...joelib2/fe
04a0 61 74 75 72 65 2f 46 65 61 74 75 72 65 52 65 73 75 6c 74 01 00 14 6a 61 76 61 2f 69 6f 2f 53 65 ature/FeatureResult...java/io/Se
04c0 72 69 61 6c 69 7a 61 62 6c 65 01 00 10 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 01 00 08 rializable...java/lang/Object...
04e0 67 65 74 43 6c 61 73 73 01 00 13 28 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 43 6c 61 73 73 3b 01 00 getClass...()Ljava/lang/Class;..
0500 0f 6a 61 76 61 2f 6c 61 6e 67 2f 43 6c 61 73 73 01 00 07 67 65 74 4e 61 6d 65 01 00 14 28 29 4c .java/lang/Class...getName...()L
0520 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 06 73 65 74 4b 65 79 01 00 15 28 4c 6a java/lang/String;...setKey...(Lj
0540 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 56 01 00 0b 73 65 74 4b 65 79 56 61 6c 75 65 ava/lang/String;)V...setKeyValue
0560 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 29 56 01 00 54 28 4c 6a 6f 65 ...(Ljava/lang/Object;)V..T(Ljoe
0580 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 74 79 70 65 73 2f 42 61 73 69 63 50 61 69 72 44 61 74 lib2/molecule/types/BasicPairDat
05a0 61 43 4d 4c 3b 29 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 74 79 70 65 73 2f 42 61 aCML;)Ljoelib2/molecule/types/Ba
05c0 73 69 63 50 61 69 72 44 61 74 61 43 4d 4c 3b 01 00 1f 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 sicPairDataCML;...joelib2/molecu
05e0 6c 65 2f 74 79 70 65 73 2f 50 61 69 72 44 61 74 61 01 00 06 67 65 74 4b 65 79 01 00 0b 67 65 74 le/types/PairData...getKey...get
0600 4b 65 79 56 61 6c 75 65 01 00 1b 6a 6f 65 6c 69 62 32 2f 73 6d 69 6c 65 73 2f 53 4d 49 4c 45 53 KeyValue...joelib2/smiles/SMILES
0620 50 61 72 73 65 72 01 00 0f 73 6d 69 6c 65 73 32 6d 6f 6c 65 63 75 6c 65 01 00 42 28 4c 6a 6f 65 Parser...smiles2molecule..B(Ljoe
0640 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 4c 6a 61 76 61 2f 6c 61 6e lib2/molecule/Molecule;Ljava/lan
0660 67 2f 53 74 72 69 6e 67 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 5a 01 00 04 g/String;Ljava/lang/String;)Z...
0680 28 49 29 56 01 00 1a 63 6f 72 72 65 63 74 41 72 6f 6d 61 74 69 63 41 6d 69 6e 65 43 68 61 72 67 (I)V...correctAromaticAmineCharg
06a0 65 01 00 0f 63 72 65 61 74 65 53 6d 69 53 74 72 69 6e 67 01 00 36 28 4c 6a 6f 65 6c 69 62 32 2f e...createSmiString..6(Ljoelib2/
06c0 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 molecule/Molecule;Ljava/lang/Str
06e0 69 6e 67 42 75 66 66 65 72 3b 29 56 01 00 19 6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f ingBuffer;)V...org/apache/log4j/
0700 43 61 74 65 67 6f 72 79 01 00 0b 67 65 74 49 6e 73 74 61 6e 63 65 01 00 2f 28 4c 6a 61 76 61 2f Category...getInstance../(Ljava/
0720 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 lang/String;)Lorg/apache/log4j/C
0740 61 74 65 67 6f 72 79 3b 00 21 00 06 00 1f 00 03 00 20 00 21 00 22 00 04 00 1a 00 23 00 24 00 01 ategory;.!.........!.".....#.$..
0760 00 25 00 00 00 02 00 26 00 0a 00 28 00 29 00 00 00 1a 00 2a 00 2b 00 01 00 25 00 00 00 02 00 0d .%.....&...(.).....*.+...%......
0780 00 04 00 2c 00 2d 00 00 00 0b 00 01 00 2e 00 2f 00 01 00 30 00 00 00 21 00 02 00 01 00 00 00 15 ...,.-........./...0...!........
07a0 2a b7 00 01 2a 2a b6 00 02 b6 00 03 b6 00 04 2a 2a b6 00 05 b1 00 00 00 00 00 01 00 31 00 32 00 *...**.........**...........1.2.
07c0 01 00 30 00 00 00 1a 00 02 00 02 00 00 00 0e bb 00 06 59 b7 00 07 4c 2a 2b b6 00 08 b0 00 00 00 ..0...............Y...L*+.......
07e0 00 00 01 00 31 00 33 00 01 00 30 00 00 00 2b 00 02 00 02 00 00 00 1f 2a 2b b7 00 09 57 2a b4 00 ....1.3...0...+........*+...W*..
0800 0a c6 00 13 2b 2a b4 00 0a b9 00 0b 01 00 c0 00 0c b5 00 0a 2b b0 00 00 00 00 00 01 00 34 00 35 ....+*..............+........4.5
0820 00 01 00 30 00 00 00 0f 00 01 00 02 00 00 00 03 12 0d b0 00 00 00 00 00 01 00 36 00 37 00 01 00 ...0......................6.7...
0840 30 00 00 00 39 00 03 00 05 00 00 00 2d 2a 2c b9 00 0e 01 00 b6 00 04 2c b9 00 0f 01 00 4e 03 36 0...9.......-*,........,.....N.6
0860 04 2d c6 00 15 2d c1 00 10 99 00 0e 2a 2b 2d c0 00 10 b6 00 11 36 04 15 04 ac 00 00 00 00 00 01 .-...-......*+-......6..........
0880 00 38 00 39 00 01 00 30 00 00 00 27 00 03 00 03 00 00 00 1b 2a bb 00 12 59 b7 00 13 b5 00 0a 2a .8.9...0...'........*...Y......*
08a0 b4 00 0a 2c 01 b8 00 14 9a 00 05 03 ac 04 ac 00 00 00 00 00 01 00 3a 00 3b 00 01 00 30 00 00 00 ...,..................:.;...0...
08c0 11 00 01 00 01 00 00 00 05 2a b4 00 0a b0 00 00 00 00 00 01 00 3c 00 3d 00 01 00 30 00 00 00 13 .........*...........<.=...0....
08e0 00 02 00 02 00 00 00 07 2a 2b b6 00 04 04 ac 00 00 00 00 00 01 00 3e 00 3f 00 01 00 30 00 00 00 ........*+............>.?...0...
0900 12 00 02 00 02 00 00 00 06 2a 2b b5 00 0a b1 00 00 00 00 00 01 00 40 00 35 00 01 00 30 00 00 00 .........*+...........@.5...0...
0920 39 00 03 00 04 00 00 00 2d bb 00 15 59 b7 00 16 4d 2c b6 00 17 bb 00 18 59 11 03 e8 b7 00 19 4e 9.......-...Y...M,......Y......N
0940 2c 2a b4 00 0a b6 00 1a 2c 2a b4 00 0a 2d b6 00 1b 2d b6 00 1c b0 00 00 00 00 00 08 00 41 00 2f ,*......,*...-...-...........A./
0960 00 01 00 30 00 00 00 19 00 01 00 00 00 00 00 0d 13 00 06 b6 00 03 b8 00 1d b3 00 1e b1 00 00 00 ...0............................
0980 00 00 00 ...