blob: 6ce290c17b45e837df4fd15e35e997601b627919 (plain)

ofs	hex dump	ascii
0000	ca fe ba be 00 00 00 31 00 b9 0a 00 3c 00 55 0a 00 56 00 57 08 00 58 07 00 59 0a 00 39 00 5a 0a	.......1....<.U..V.W..X..Y..9.Z.
0020	00 5b 00 5c 09 00 09 00 5d 09 00 09 00 5e 07 00 5f 08 00 60 08 00 61 0a 00 62 00 63 08 00 64 0b	.[.\....]....^.._..`..a..b.c..d.
0040	00 0f 00 65 07 00 66 0b 00 0f 00 67 0a 00 5b 00 68 0a 00 3a 00 5a 0a 00 5b 00 69 07 00 6a 07 00	...e..f....g..[.h..:.Z..[.i..j..
0060	6b 09 00 09 00 6c 07 00 6d 0a 00 17 00 55 08 00 6e 0a 00 17 00 6f 08 00 70 0a 00 09 00 5a 08 00	k....l..m....U..n....o..p....Z..
0080	71 0a 00 17 00 72 0a 00 73 00 74 0a 00 3b 00 5a 0a 00 14 00 72 08 00 75 07 00 76 08 00 77 08 00	q....r..s.t..;.Z....r..u..v..w..
00a0	78 08 00 79 08 00 7a 09 00 23 00 7b 0b 00 0f 00 7c 08 00 7d 0a 00 7e 00 7f 07 00 80 0b 00 15 00	x..y..z..#.{....|..}..~.........
00c0	81 07 00 82 0a 00 2e 00 83 03 7f ff ff ff 0a 00 73 00 84 08 00 85 0a 00 17 00 86 08 00 87 08 00	................s...............
00e0	88 0a 00 73 00 89 0a 00 62 00 8a 0a 00 73 00 8b 07 00 8c 07 00 8d 07 00 8e 07 00 8f 01 00 06 56	...s....b....s.................V
0100	45 4e 44 4f 52 01 00 12 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 0d 43 6f 6e	ENDOR...Ljava/lang/String;...Con
0120	73 74 61 6e 74 56 61 6c 75 65 01 00 0f 52 45 4c 45 41 53 45 5f 56 45 52 53 49 4f 4e 01 00 0c 52	stantValue...RELEASE_VERSION...R
0140	45 4c 45 41 53 45 5f 44 41 54 45 01 00 06 6c 6f 67 67 65 72 01 00 1b 4c 6f 72 67 2f 61 70 61 63	ELEASE_DATE...logger...Lorg/apac
0160	68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 3b 01 00 0c 44 45 50 45 4e 44 45 4e 43 49 45	he/log4j/Category;...DEPENDENCIE
0180	53 01 00 12 5b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 43 6c 61 73 73 3b 01 00 06 3c 69 6e 69 74 3e 01	S...[Ljava/lang/Class;...<init>.
01a0	00 03 28 29 56 01 00 04 43 6f 64 65 01 00 0f 67 65 74 44 65 70 65 6e 64 65 6e 63 69 65 73 01 00	..()V...Code...getDependencies..
01c0	14 28 29 5b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 43 6c 61 73 73 3b 01 00 07 67 65 74 4e 61 6d 65 01	.()[Ljava/lang/Class;...getName.
01e0	00 14 28 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 0e 67 65 74 52 65 6c 65	..()Ljava/lang/String;...getRele
0200	61 73 65 44 61 74 65 01 00 11 67 65 74 52 65 6c 65 61 73 65 56 65 72 73 69 6f 6e 01 00 09 67 65	aseDate...getReleaseVersion...ge
0220	74 56 65 6e 64 6f 72 01 00 16 67 65 74 41 74 6f 6d 50 72 6f 70 65 72 74 69 65 73 41 72 72 61 79	tVendor...getAtomPropertiesArray
0240	01 00 2f 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 29	../(Ljoelib2/molecule/Molecule;)
0260	4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 01 00 1b 68 61 73 68 65 64 44 65 70 65 6e	Ljava/lang/Object;...hashedDepen
0280	64 65 6e 63 79 54 72 65 65 56 65 72 73 69 6f 6e 01 00 03 28 29 49 01 00 08 3c 63 6c 69 6e 69 74	dencyTreeVersion...()I...<clinit
02a0	3e 0c 00 46 00 47 07 00 90 0c 00 91 00 92 01 00 0e 6e 6f 5f 63 6f 6f 72 64 69 6e 61 74 65 73 01	>..F.G...........no_coordinates.
02c0	00 28 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 72 65 73 75 6c 74 2f 41 74 6f 6d 44 79 6e	.(joelib2/feature/result/AtomDyn
02e0	61 6d 69 63 52 65 73 75 6c 74 0c 00 4b 00 4c 07 00 93 0c 00 94 00 95 0c 00 96 00 97 0c 00 44 00	amicResult..K.L...............D.
0300	45 01 00 33 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 74 79 70 65 73 2f 43 6f 6e 6a 75 67	E..3joelib2/feature/types/Conjug
0320	61 74 65 64 54 6f 70 6f 6c 6f 67 69 63 61 6c 44 69 73 74 61 6e 63 65 01 00 14 68 74 74 70 3a 2f	atedTopologicalDistance...http:/
0340	2f 6a 6f 65 6c 69 62 2e 73 66 2e 6e 65 74 01 00 10 24 52 65 76 69 73 69 6f 6e 3a 20 31 2e 39 20	/joelib.sf.net...$Revision:.1.9.
0360	24 07 00 98 0c 00 99 00 9a 01 00 1c 24 44 61 74 65 3a 20 32 30 30 35 2f 30 32 2f 31 37 20 31 36	$...........$Date:.2005/02/17.16
0380	3a 34 38 3a 33 31 20 24 0c 00 9b 00 9c 01 00 19 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65	:48:31.$........joelib2/molecule
03a0	2f 4d 6f 6c 65 63 75 6c 65 0c 00 9d 00 9e 0c 00 9f 00 a0 0c 00 a1 00 a2 01 00 20 6a 6f 65 6c 69	/Molecule..................joeli
03c0	62 32 2f 66 65 61 74 75 72 65 2f 46 65 61 74 75 72 65 45 78 63 65 70 74 69 6f 6e 01 00 25 6a 6f	b2/feature/FeatureException..%jo
03e0	65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 74 79 70 65 73 2f 41 74 6f 6d 50 72 6f 70 65 72 74	elib2/molecule/types/AtomPropert
0400	69 65 73 0c 00 42 00 43 01 00 17 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64	ies..B.C...java/lang/StringBuild
0420	65 72 01 00 0a 50 72 6f 70 65 72 74 79 20 27 0c 00 a3 00 a4 01 00 28 27 20 6d 75 73 74 20 62 65	er...Property.'.......('.must.be
0440	20 61 6e 20 61 74 6f 6d 20 74 79 70 65 20 74 6f 20 63 61 6c 63 75 6c 61 74 65 20 74 68 65 20 01	.an.atom.type.to.calculate.the..
0460	00 01 2e 0c 00 a5 00 4c 07 00 a6 0c 00 a7 00 a8 01 00 26 43 61 6e 20 6e 6f 74 20 63 61 6c 63 75	.......L..........&Can.not.calcu
0480	6c 61 74 65 20 64 69 73 74 61 6e 63 65 20 6d 61 74 72 69 78 20 66 6f 72 20 01 00 26 6a 6f 65 6c	late.distance.matrix.for...&joel
04a0	69 62 32 2f 66 65 61 74 75 72 65 2f 72 65 73 75 6c 74 2f 49 6e 74 4d 61 74 72 69 78 52 65 73 75	ib2/feature/result/IntMatrixResu
04c0	6c 74 01 00 13 4e 65 65 64 65 64 20 64 65 73 63 72 69 70 74 6f 72 20 27 01 00 14 27 20 73 68 6f	lt...Needed.descriptor.'...'.sho
04e0	75 6c 64 20 62 65 20 6f 66 20 74 79 70 65 20 01 00 02 2e 20 01 00 17 20 63 61 6e 20 6e 6f 74 20	uld.be.of.type..........can.not.
0500	62 65 20 63 61 6c 63 75 6c 61 74 65 64 2e 0c 00 a9 00 aa 0c 00 ab 00 53 01 00 03 69 6e 74 07 00	be.calculated..........S...int..
0520	ac 0c 00 ad 00 ae 01 00 02 5b 49 0c 00 af 00 b0 01 00 13 6a 61 76 61 2f 6c 61 6e 67 2f 45 78 63	.........[I........java/lang/Exc
0540	65 70 74 69 6f 6e 0c 00 b1 00 47 0c 00 b2 00 9e 01 00 0b 63 6f 6e 6a 75 67 61 74 65 64 5b 0c 00	eption....G........conjugated[..
0560	a3 00 b3 01 00 02 5d 3d 01 00 07 20 63 64 69 73 74 5b 0c 00 b4 00 a8 0c 00 b5 00 b6 0c 00 b7 00	......]=....cdist[..............
0580	b8 01 00 0f 6a 61 76 61 2f 6c 61 6e 67 2f 43 6c 61 73 73 01 00 35 6a 6f 65 6c 69 62 32 2f 66 65	....java/lang/Class..5joelib2/fe
05a0	61 74 75 72 65 2f 74 79 70 65 73 2f 61 74 6f 6d 6c 61 62 65 6c 2f 41 74 6f 6d 49 6e 43 6f 6e 6a	ature/types/atomlabel/AtomInConj
05c0	45 6e 76 69 72 6f 6e 6d 65 6e 74 01 00 2d 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 74 79	Environment..-joelib2/feature/ty
05e0	70 65 73 2f 41 50 72 6f 70 65 72 74 79 44 69 73 74 61 6e 63 65 4d 61 74 72 69 78 01 00 2b 6a 6f	pes/APropertyDistanceMatrix..+jo
0600	65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 41 62 73 74 72 61 63 74 44 79 6e 61 6d 69 63 41 74 6f	elib2/feature/AbstractDynamicAto
0620	6d 50 72 6f 70 65 72 74 79 01 00 10 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 01 00 08 67	mProperty...java/lang/Object...g
0640	65 74 43 6c 61 73 73 01 00 13 28 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 43 6c 61 73 73 3b 01 00 1d	etClass...()Ljava/lang/Class;...
0660	6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 46 65 61 74 75 72 65 48 65 6c 70 65 72 01 00 13	joelib2/feature/FeatureHelper...
0680	67 65 6e 65 72 61 74 65 46 65 61 74 75 72 65 49 6e 66 6f 01 00 6b 28 4c 6a 61 76 61 2f 6c 61 6e	generateFeatureInfo..k(Ljava/lan
06a0	67 2f 43 6c 61 73 73 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 61 76 61 2f	g/Class;Ljava/lang/String;Ljava/
06c0	6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c	lang/String;Ljava/lang/String;)L
06e0	6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 42 61 73 69 63 46 65 61 74 75 72 65 49 6e 66 6f	joelib2/feature/BasicFeatureInfo
0700	3b 01 00 08 64 65 73 63 49 6e 66 6f 01 00 22 4c 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f	;...descInfo.."Ljoelib2/feature/
0720	42 61 73 69 63 46 65 61 74 75 72 65 49 6e 66 6f 3b 01 00 23 6a 6f 65 6c 69 62 32 2f 64 61 74 61	BasicFeatureInfo;..#joelib2/data
0740	2f 49 64 65 6e 74 69 66 69 65 72 45 78 70 65 72 74 53 79 73 74 65 6d 01 00 0f 74 72 61 6e 73 66	/IdentifierExpertSystem...transf
0760	6f 72 6d 43 56 53 74 61 67 01 00 26 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29	ormCVStag..&(Ljava/lang/String;)
0780	4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 05 63 6c 6f 6e 65 01 00 14 28 29 4c	Ljava/lang/String;...clone...()L
07a0	6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 01 00 0f 64 65 6c 65 74 65 48 79 64 72 6f 67	java/lang/Object;...deleteHydrog
07c0	65 6e 73 01 00 03 28 29 5a 01 00 08 69 6e 73 74 61 6e 63 65 01 00 21 28 29 4c 6a 6f 65 6c 69 62	ens...()Z...instance..!()Ljoelib
07e0	32 2f 66 65 61 74 75 72 65 2f 46 65 61 74 75 72 65 48 65 6c 70 65 72 3b 01 00 0b 66 65 61 74 75	2/feature/FeatureHelper;...featu
0800	72 65 46 72 6f 6d 01 00 4e 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65	reFrom..N(Ljoelib2/molecule/Mole
0820	63 75 6c 65 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 6f 65 6c 69 62 32	cule;Ljava/lang/String;)Ljoelib2
0840	2f 66 65 61 74 75 72 65 2f 46 65 61 74 75 72 65 52 65 73 75 6c 74 3b 01 00 06 61 70 70 65 6e 64	/feature/FeatureResult;...append
0860	01 00 2d 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 61 76 61 2f 6c 61 6e	..-(Ljava/lang/String;)Ljava/lan
0880	67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 3b 01 00 08 74 6f 53 74 72 69 6e 67 01 00 19 6f 72	g/StringBuilder;...toString...or
08a0	67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 01 00 05 65 72 72 6f 72 01	g/apache/log4j/Category...error.
08c0	00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 29 56 01 00 05 76 61 6c 75 65 01	..(Ljava/lang/Object;)V...value.
08e0	00 03 5b 5b 49 01 00 0c 67 65 74 41 74 6f 6d 73 53 69 7a 65 01 00 29 6a 6f 65 6c 69 62 32 2f 66	..[[I...getAtomsSize..)joelib2/f
0900	65 61 74 75 72 65 2f 72 65 73 75 6c 74 2f 44 79 6e 61 6d 69 63 41 72 72 61 79 52 65 73 75 6c 74	eature/result/DynamicArrayResult
0920	01 00 0b 67 65 74 4e 65 77 41 72 72 61 79 01 00 27 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72	...getNewArray..'(Ljava/lang/Str
0940	69 6e 67 3b 49 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 01 00 0b 67 65 74 49 6e	ing;I)Ljava/lang/Object;...getIn
0960	74 56 61 6c 75 65 01 00 04 28 49 29 49 01 00 0f 70 72 69 6e 74 53 74 61 63 6b 54 72 61 63 65 01	tValue...(I)I...printStackTrace.
0980	00 0e 69 73 44 65 62 75 67 45 6e 61 62 6c 65 64 01 00 1c 28 49 29 4c 6a 61 76 61 2f 6c 61 6e 67	..isDebugEnabled...(I)Ljava/lang
09a0	2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 3b 01 00 05 64 65 62 75 67 01 00 15 67 65 74 44 65 70	/StringBuilder;...debug...getDep
09c0	65 6e 64 65 6e 63 79 54 72 65 65 48 61 73 68 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74	endencyTreeHash...(Ljava/lang/St
09e0	72 69 6e 67 3b 29 49 01 00 0b 67 65 74 49 6e 73 74 61 6e 63 65 01 00 2f 28 4c 6a 61 76 61 2f 6c	ring;)I...getInstance../(Ljava/l
0a00	61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61	ang/String;)Lorg/apache/log4j/Ca
0a20	74 65 67 6f 72 79 3b 00 21 00 09 00 3c 00 00 00 05 00 1a 00 3d 00 3e 00 01 00 3f 00 00 00 02 00	tegory;.!...<.......=.>...?.....
0a40	0a 00 1a 00 40 00 3e 00 01 00 3f 00 00 00 02 00 0b 00 1a 00 41 00 3e 00 01 00 3f 00 00 00 02 00	....@.>...?.........A.>...?.....
0a60	0d 00 0a 00 42 00 43 00 00 00 1a 00 44 00 45 00 00 00 09 00 01 00 46 00 47 00 01 00 48 00 00 00	....B.C.....D.E.......F.G...H...
0a80	25 00 05 00 01 00 00 00 19 2a b7 00 01 2a 2a b6 00 02 12 03 01 13 00 04 b6 00 05 b8 00 06 b5 00	%........*...**.................
0aa0	07 b1 00 00 00 00 00 09 00 49 00 4a 00 01 00 48 00 00 00 10 00 01 00 00 00 00 00 04 b2 00 08 b0	.........I.J...H................
0ac0	00 00 00 00 00 09 00 4b 00 4c 00 01 00 48 00 00 00 13 00 01 00 00 00 00 00 07 13 00 09 b6 00 05	.......K.L...H..................
0ae0	b0 00 00 00 00 00 09 00 4d 00 4c 00 01 00 48 00 00 00 0f 00 01 00 00 00 00 00 03 12 0a b0 00 00	........M.L...H.................
0b00	00 00 00 09 00 4e 00 4c 00 01 00 48 00 00 00 12 00 01 00 00 00 00 00 06 12 0b b8 00 0c b0 00 00	.....N.L...H....................
0b20	00 00 00 09 00 4f 00 4c 00 01 00 48 00 00 00 12 00 01 00 00 00 00 00 06 12 0d b8 00 0c b0 00 00	.....O.L...H....................
0b40	00 00 00 01 00 50 00 51 00 01 00 48 00 00 01 fc 00 04 00 0e 00 00 01 d8 2b b9 00 0e 01 00 c0 00	.....P.Q...H............+.......
0b60	0f 4e 2d b9 00 10 01 00 57 b8 00 11 2d b8 00 12 b6 00 13 4d a7 00 07 3a 04 01 b0 2c c1 00 15 99	.N-.....W...-......M...:...,....
0b80	00 0c 2c c0 00 15 3a 04 a7 00 30 b2 00 16 bb 00 17 59 b7 00 18 12 19 b6 00 1a b8 00 12 b6 00 1a	..,...:...0......Y..............
0ba0	12 1b b6 00 1a b8 00 1c b6 00 1a 12 1d b6 00 1a b6 00 1e b6 00 1f 01 b0 01 3a 05 b8 00 11 2d b8	.........................:....-.
0bc0	00 20 b6 00 13 3a 05 a7 00 32 3a 06 b2 00 16 19 06 b6 00 21 b6 00 1f b2 00 16 bb 00 17 59 b7 00	.....:...2:........!.........Y..
0be0	18 12 22 b6 00 1a b8 00 1c b6 00 1a 12 1d b6 00 1a b6 00 1e b6 00 1f 01 b0 19 05 c1 00 23 9a 00	.."..........................#..
0c00	3e b2 00 16 bb 00 17 59 b7 00 18 12 24 b6 00 1a b8 00 20 b6 00 1a 12 25 b6 00 1a 13 00 23 b6 00	>......Y....$..........%.....#..
0c20	05 b6 00 1a 12 26 b6 00 1a b8 00 1c b6 00 1a 12 27 b6 00 1a b6 00 1e b6 00 1f 01 b0 19 05 c0 00	.....&..........'...............
0c40	23 3a 06 19 06 b4 00 28 3a 07 2d b9 00 29 01 00 36 08 12 2a 15 08 b8 00 2b c0 00 2c c0 00 2c 3a	#:.....(:.-..)..6..*....+..,..,:
0c60	09 03 36 0b 03 36 0c 15 0c 15 08 a2 00 c2 15 0c 04 60 36 0a 19 04 15 0a b9 00 2d 02 00 36 0b a7	..6..6...........`6.......-..6..
0c80	00 0a 3a 0d 19 0d b6 00 2f 19 09 15 0c 04 4f 03 36 0d 15 0d 15 08 a2 00 4d 19 07 15 0c 32 15 0d	..:...../.....O.6.......M....2..
0ca0	2e 99 00 10 19 07 15 0c 32 15 0d 2e 12 30 a0 00 0c 19 07 15 0c 32 15 0d 04 4f 15 0b 04 a0 00 20	........2....0.......2...O......
0cc0	19 09 15 0c 2e 19 07 15 0c 32 15 0d 2e a2 00 10 19 09 15 0c 19 07 15 0c 32 15 0d 2e 4f 84 0d 01	.........2..............2...O...
0ce0	a7 ff b2 b2 00 16 b6 00 31 99 00 3e b2 00 16 bb 00 17 59 b7 00 18 12 32 b6 00 1a 15 0a b6 00 33	........1..>......Y....2.......3
0d00	12 34 b6 00 1a 15 0b b6 00 33 12 35 b6 00 1a 15 0a b6 00 33 12 34 b6 00 1a 19 09 15 0c 2e b6 00	.4.......3.5.......3.4..........
0d20	33 b6 00 1e b6 00 36 84 0c 01 a7 ff 3d 19 09 b0 00 03 00 11 00 1c 00 1f 00 14 00 63 00 6f 00 72	3.....6.....=..............c.o.r
0d40	00 14 01 1c 01 27 01 2a 00 2e 00 00 00 01 00 52 00 53 00 01 00 48 00 00 00 13 00 01 00 01 00 00	.....'.*.......R.S...H..........
0d60	00 07 b8 00 1c b8 00 37 ac 00 00 00 00 00 08 00 54 00 47 00 01 00 48 00 00 00 2c 00 04 00 00 00	.......7........T.G...H...,.....
0d80	00 00 20 13 00 09 b6 00 05 b8 00 38 b3 00 16 05 bd 00 39 59 03 13 00 3a 53 59 04 13 00 3b 53 b3	...........8......9Y...:SY...;S.
0da0	00 08 b1 00 00 00 00 00 00	.........