summaryrefslogtreecommitdiff
path: root/java/joelib2/feature/types/GlobalTopologicalChargeIndex.class
blob: ae5c914b429d14310c001a0bab592df8fc81db3d (plain)
ofshex dumpascii
0000 ca fe ba be 00 00 00 31 01 31 0a 00 62 00 91 0a 00 62 00 92 08 00 93 08 00 94 0a 00 95 00 96 09 .......1.1..b....b..............
0020 00 08 00 97 09 00 08 00 98 07 00 99 0a 00 5f 00 9a 08 00 9b 08 00 9c 0a 00 9d 00 9e 08 00 9f 09 .............._.................
0040 00 08 00 a0 0a 00 a1 00 a2 0a 00 a3 00 9a 0a 00 a1 00 a4 0a 00 08 00 a5 07 00 a6 09 00 08 00 a7 ................................
0060 07 00 a8 0a 00 15 00 91 0a 00 15 00 a9 08 00 aa 08 00 ab 0a 00 5f 00 ac 0a 00 15 00 ac 0a 00 ad ....................._..........
0080 00 ae 0a 00 08 00 af 0b 00 2d 00 b0 06 7f f8 00 00 00 00 00 00 09 00 13 00 b1 08 00 b2 0b 00 2d .........-.....................-
00a0 00 b3 08 00 b4 0a 00 08 00 9a 08 00 b5 0a 00 15 00 b6 0a 00 ad 00 b7 09 00 08 00 b8 09 00 13 00 ................................
00c0 b9 07 00 ba 0b 00 2d 00 bb 07 00 bc 0b 00 2d 00 bd 0a 00 95 00 be 0a 00 95 00 bf 07 00 c0 08 00 ......-.......-.................
00e0 c1 08 00 c2 08 00 c3 0a 00 61 00 9a 07 00 c4 0a 00 36 00 ac 08 00 c5 07 00 c6 08 00 c7 08 00 c8 .........a.......6..............
0100 08 00 c9 08 00 ca 09 00 39 00 cb 07 00 cc 0b 00 2d 00 cd 0a 00 3f 00 ce 0b 00 2d 00 cf 0b 00 d0 ........9.......-....?....-.....
0120 00 d1 0b 00 d2 00 d3 0b 00 d2 00 d4 0b 00 d0 00 d5 0a 00 3f 00 d6 07 00 d7 0a 00 3f 00 d8 0a 00 ...................?.......?....
0140 3f 00 d9 0a 00 3f 00 da 0b 00 31 00 db 06 bf f0 00 00 00 00 00 00 06 3f e0 00 00 00 00 00 00 07 ?....?....1............?........
0160 00 dc 0a 00 a3 00 dd 0a 00 51 00 de 0a 00 9d 00 df 0a 00 e0 00 e1 08 00 e2 08 00 6b 0a 00 e0 00 .........Q.................k....
0180 e3 0a 00 60 00 9a 0a 00 ad 00 e4 07 00 e5 08 00 e6 08 00 e7 0a 00 5b 00 e8 07 00 e9 07 00 ea 07 ...`..................[.........
01a0 00 eb 07 00 ec 07 00 ed 01 00 06 56 45 4e 44 4f 52 01 00 12 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 ...........VENDOR...Ljava/lang/S
01c0 74 72 69 6e 67 3b 01 00 0d 43 6f 6e 73 74 61 6e 74 56 61 6c 75 65 01 00 0f 52 45 4c 45 41 53 45 tring;...ConstantValue...RELEASE
01e0 5f 56 45 52 53 49 4f 4e 01 00 0c 52 45 4c 45 41 53 45 5f 44 41 54 45 01 00 06 6c 6f 67 67 65 72 _VERSION...RELEASE_DATE...logger
0200 01 00 1b 4c 6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 3b 01 00 ...Lorg/apache/log4j/Category;..
0220 0d 41 54 4f 4d 5f 50 52 4f 50 45 52 54 59 01 00 13 41 43 43 45 50 54 45 44 5f 50 52 4f 50 45 52 .ATOM_PROPERTY...ACCEPTED_PROPER
0240 54 49 45 53 01 00 1d 5b 4c 6a 6f 65 6c 69 62 32 2f 75 74 69 6c 2f 42 61 73 69 63 50 72 6f 70 65 TIES...[Ljoelib2/util/BasicPrope
0260 72 74 79 3b 01 00 0c 44 45 50 45 4e 44 45 4e 43 49 45 53 01 00 12 5b 4c 6a 61 76 61 2f 6c 61 6e rty;...DEPENDENCIES...[Ljava/lan
0280 67 2f 43 6c 61 73 73 3b 01 00 08 64 65 73 63 49 6e 66 6f 01 00 22 4c 6a 6f 65 6c 69 62 32 2f 66 g/Class;...descInfo.."Ljoelib2/f
02a0 65 61 74 75 72 65 2f 42 61 73 69 63 46 65 61 74 75 72 65 49 6e 66 6f 3b 01 00 0c 70 72 6f 70 65 eature/BasicFeatureInfo;...prope
02c0 72 74 79 4e 61 6d 65 01 00 06 3c 69 6e 69 74 3e 01 00 03 28 29 56 01 00 04 43 6f 64 65 01 00 0f rtyName...<init>...()V...Code...
02e0 67 65 74 44 65 70 65 6e 64 65 6e 63 69 65 73 01 00 14 28 29 5b 4c 6a 61 76 61 2f 6c 61 6e 67 2f getDependencies...()[Ljava/lang/
0300 43 6c 61 73 73 3b 01 00 07 67 65 74 4e 61 6d 65 01 00 14 28 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f Class;...getName...()Ljava/lang/
0320 53 74 72 69 6e 67 3b 01 00 0e 67 65 74 52 65 6c 65 61 73 65 44 61 74 65 01 00 11 67 65 74 52 65 String;...getReleaseDate...getRe
0340 6c 65 61 73 65 56 65 72 73 69 6f 6e 01 00 09 67 65 74 56 65 6e 64 6f 72 01 00 12 61 63 63 65 70 leaseVersion...getVendor...accep
0360 74 65 64 50 72 6f 70 65 72 74 69 65 73 01 00 1f 28 29 5b 4c 6a 6f 65 6c 69 62 32 2f 75 74 69 6c tedProperties...()[Ljoelib2/util
0380 2f 42 61 73 69 63 50 72 6f 70 65 72 74 79 3b 01 00 09 63 61 6c 63 75 6c 61 74 65 01 00 3c 28 4c /BasicProperty;...calculate..<(L
03a0 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 29 4c 6a 6f 65 6c joelib2/molecule/Molecule;)Ljoel
03c0 69 62 32 2f 66 65 61 74 75 72 65 2f 46 65 61 74 75 72 65 52 65 73 75 6c 74 3b 01 00 0a 45 78 63 ib2/feature/FeatureResult;...Exc
03e0 65 70 74 69 6f 6e 73 01 00 4b 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c eptions..K(Ljoelib2/molecule/Mol
0400 65 63 75 6c 65 3b 4c 6a 61 76 61 2f 75 74 69 6c 2f 4d 61 70 3b 29 4c 6a 6f 65 6c 69 62 32 2f 66 ecule;Ljava/util/Map;)Ljoelib2/f
0420 65 61 74 75 72 65 2f 46 65 61 74 75 72 65 52 65 73 75 6c 74 3b 01 00 5b 28 4c 6a 6f 65 6c 69 62 eature/FeatureResult;..[(Ljoelib
0440 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 4c 6a 6f 65 6c 69 62 32 2f 66 65 61 2/molecule/Molecule;Ljoelib2/fea
0460 74 75 72 65 2f 46 65 61 74 75 72 65 52 65 73 75 6c 74 3b 29 4c 6a 6f 65 6c 69 62 32 2f 66 65 61 ture/FeatureResult;)Ljoelib2/fea
0480 74 75 72 65 2f 46 65 61 74 75 72 65 52 65 73 75 6c 74 3b 01 00 6a 28 4c 6a 6f 65 6c 69 62 32 2f ture/FeatureResult;..j(Ljoelib2/
04a0 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 4c 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 molecule/Molecule;Ljoelib2/featu
04c0 72 65 2f 46 65 61 74 75 72 65 52 65 73 75 6c 74 3b 4c 6a 61 76 61 2f 75 74 69 6c 2f 4d 61 70 3b re/FeatureResult;Ljava/util/Map;
04e0 29 4c 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 46 65 61 74 75 72 65 52 65 73 75 6c 74 3b )Ljoelib2/feature/FeatureResult;
0500 01 00 05 63 6c 65 61 72 01 00 0b 67 65 74 44 65 73 63 49 6e 66 6f 01 00 24 28 29 4c 6a 6f 65 6c ...clear...getDescInfo..$()Ljoel
0520 69 62 32 2f 66 65 61 74 75 72 65 2f 42 61 73 69 63 46 65 61 74 75 72 65 49 6e 66 6f 3b 01 00 0e ib2/feature/BasicFeatureInfo;...
0540 67 65 74 44 65 73 63 72 69 70 74 69 6f 6e 01 00 26 28 29 4c 6a 6f 65 6c 69 62 32 2f 66 65 61 74 getDescription..&()Ljoelib2/feat
0560 75 72 65 2f 46 65 61 74 75 72 65 44 65 73 63 72 69 70 74 69 6f 6e 3b 01 00 1b 68 61 73 68 65 64 ure/FeatureDescription;...hashed
0580 44 65 70 65 6e 64 65 6e 63 79 54 72 65 65 56 65 72 73 69 6f 6e 01 00 03 28 29 49 01 00 0a 69 6e DependencyTreeVersion...()I...in
05a0 69 74 69 61 6c 69 7a 65 01 00 12 28 4c 6a 61 76 61 2f 75 74 69 6c 2f 4d 61 70 3b 29 5a 01 00 0e itialize...(Ljava/util/Map;)Z...
05c0 74 65 73 74 44 65 73 63 72 69 70 74 6f 72 01 00 03 28 29 5a 01 00 08 3c 63 6c 69 6e 69 74 3e 0c testDescriptor...()Z...<clinit>.
05e0 00 73 00 74 0c 00 ee 00 ef 01 00 0e 6e 6f 5f 63 6f 6f 72 64 69 6e 61 74 65 73 01 00 28 6a 6f 65 .s.t........no_coordinates..(joe
0600 6c 69 62 32 2e 66 65 61 74 75 72 65 2e 72 65 73 75 6c 74 2e 41 50 72 6f 70 44 6f 75 62 6c 65 52 lib2.feature.result.APropDoubleR
0620 65 73 75 6c 74 07 00 f0 0c 00 f1 00 f2 0c 00 70 00 71 0c 00 6e 00 6f 01 00 32 6a 6f 65 6c 69 62 esult..........p.q..n.o..2joelib
0640 32 2f 66 65 61 74 75 72 65 2f 74 79 70 65 73 2f 47 6c 6f 62 61 6c 54 6f 70 6f 6c 6f 67 69 63 61 2/feature/types/GlobalTopologica
0660 6c 43 68 61 72 67 65 49 6e 64 65 78 0c 00 78 00 79 01 00 14 68 74 74 70 3a 2f 2f 6a 6f 65 6c 69 lChargeIndex..x.y...http://joeli
0680 62 2e 73 66 2e 6e 65 74 01 00 11 24 52 65 76 69 73 69 6f 6e 3a 20 31 2e 31 31 20 24 07 00 f3 0c b.sf.net...$Revision:.1.11.$....
06a0 00 f4 00 f5 01 00 1c 24 44 61 74 65 3a 20 32 30 30 35 2f 30 32 2f 31 37 20 31 36 3a 34 38 3a 33 .......$Date:.2005/02/17.16:48:3
06c0 31 20 24 0c 00 6c 00 6d 07 00 f6 0c 00 f7 00 f8 07 00 f9 0c 00 fa 00 fb 0c 00 7f 00 84 01 00 28 1.$..l.m.......................(
06e0 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 72 65 73 75 6c 74 2f 41 50 72 6f 70 44 6f 75 62 joelib2/feature/result/APropDoub
0700 6c 65 52 65 73 75 6c 74 0c 00 69 00 6a 01 00 17 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 leResult..i.j...java/lang/String
0720 42 75 69 6c 64 65 72 0c 00 fc 00 fd 01 00 1a 20 72 65 73 75 6c 74 20 73 68 6f 75 6c 64 20 62 65 Builder.........result.should.be
0740 20 6f 66 20 74 79 70 65 20 01 00 12 20 62 75 74 20 69 74 27 73 20 6f 66 20 74 79 70 65 20 0c 00 .of.type.....but.it's.of.type...
0760 fe 00 79 07 00 ff 0c 01 00 01 01 0c 00 8c 00 8d 0c 01 02 00 8f 0c 01 03 01 04 01 00 10 45 6d 70 ..y..........................Emp
0780 74 79 20 6d 6f 6c 65 63 75 6c 65 20 27 0c 01 05 00 79 01 00 03 27 2e 20 01 00 0c 20 77 61 73 20 ty.molecule.'....y...'......was.
07a0 73 65 74 20 74 6f 20 0c 00 fc 01 06 0c 01 07 01 01 0c 00 72 00 65 0c 01 08 00 65 01 00 10 6a 61 set.to.............r.e....e...ja
07c0 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 0c 01 09 01 0a 01 00 19 6a 6f 65 6c 69 62 32 2f 6d 6f va/lang/String........joelib2/mo
07e0 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 0c 01 0b 00 8f 0c 00 f7 01 0c 0c 01 0d 01 0e 01 00 lecule/Molecule.................
0800 25 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 74 79 70 65 73 2f 41 74 6f 6d 50 72 6f 70 %joelib2/molecule/types/AtomProp
0820 65 72 74 69 65 73 01 00 0a 50 72 6f 70 65 72 74 79 20 27 01 00 28 27 20 6d 75 73 74 20 62 65 20 erties...Property.'..('.must.be.
0840 61 6e 20 61 74 6f 6d 20 74 79 70 65 20 74 6f 20 63 61 6c 63 75 6c 61 74 65 20 74 68 65 20 01 00 an.atom.type.to.calculate.the...
0860 01 2e 01 00 20 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 46 65 61 74 75 72 65 45 78 63 65 .....joelib2/feature/FeatureExce
0880 70 74 69 6f 6e 01 00 26 43 61 6e 20 6e 6f 74 20 63 61 6c 63 75 6c 61 74 65 20 64 69 73 74 61 6e ption..&Can.not.calculate.distan
08a0 63 65 20 6d 61 74 72 69 78 20 66 6f 72 20 01 00 26 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 ce.matrix.for...&joelib2/feature
08c0 2f 72 65 73 75 6c 74 2f 49 6e 74 4d 61 74 72 69 78 52 65 73 75 6c 74 01 00 13 4e 65 65 64 65 64 /result/IntMatrixResult...Needed
08e0 20 64 65 73 63 72 69 70 74 6f 72 20 27 01 00 14 27 20 73 68 6f 75 6c 64 20 62 65 20 6f 66 20 74 .descriptor.'...'.should.be.of.t
0900 79 70 65 20 01 00 02 2e 20 01 00 17 20 63 61 6e 20 6e 6f 74 20 62 65 20 63 61 6c 63 75 6c 61 74 ype..........can.not.be.calculat
0920 65 64 2e 0c 01 03 01 0f 01 00 10 6a 6d 61 74 2f 64 61 74 61 2f 4d 61 74 72 69 78 0c 01 10 00 8b ed.........jmat/data/Matrix.....
0940 0c 00 73 01 11 0c 01 12 01 13 07 01 14 0c 01 15 01 16 07 01 17 0c 01 18 00 8f 0c 01 19 01 1a 0c ..s.............................
0960 01 1b 00 8b 0c 01 1c 01 1d 01 00 03 5b 5b 44 0c 00 73 01 1e 0c 01 1f 01 20 0c 01 21 01 22 0c 01 ............[[D..s.........!."..
0980 23 01 24 01 00 27 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 42 61 73 69 63 46 65 61 74 75 #.$..'joelib2/feature/BasicFeatu
09a0 72 65 44 65 73 63 72 69 70 74 69 6f 6e 0c 01 25 00 79 0c 00 73 01 26 0c 01 27 01 28 07 01 29 0c reDescription..%.y..s.&..'.(..).
09c0 01 2a 01 2b 01 00 34 45 6d 70 74 79 20 70 72 6f 70 65 72 74 79 20 64 65 66 69 6e 69 74 69 6f 6e .*.+..4Empty.property.definition
09e0 20 6f 72 20 6d 69 73 73 69 6e 67 20 70 72 6f 70 65 72 74 79 20 65 6e 74 72 79 2e 0c 01 2c 01 2d .or.missing.property.entry...,.-
0a00 0c 01 2e 01 2f 01 00 1a 6a 6f 65 6c 69 62 32 2f 75 74 69 6c 2f 42 61 73 69 63 50 72 6f 70 65 72 ..../...joelib2/util/BasicProper
0a20 74 79 01 00 10 6a 61 76 61 2e 6c 61 6e 67 2e 53 74 72 69 6e 67 01 00 15 41 74 6f 6d 20 70 72 6f ty...java.lang.String...Atom.pro
0a40 70 65 72 74 79 20 74 6f 20 75 73 65 2e 0c 00 73 01 30 01 00 0f 6a 61 76 61 2f 6c 61 6e 67 2f 43 perty.to.use...s.0...java/lang/C
0a60 6c 61 73 73 01 00 2b 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 74 79 70 65 73 2f 61 74 6f lass..+joelib2/feature/types/ato
0a80 6d 6c 61 62 65 6c 2f 41 74 6f 6d 56 61 6c 65 6e 63 65 01 00 24 6a 6f 65 6c 69 62 32 2f 66 65 61 mlabel/AtomValence..$joelib2/fea
0aa0 74 75 72 65 2f 74 79 70 65 73 2f 44 69 73 74 61 6e 63 65 4d 61 74 72 69 78 01 00 10 6a 61 76 61 ture/types/DistanceMatrix...java
0ac0 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 01 00 17 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 46 /lang/Object...joelib2/feature/F
0ae0 65 61 74 75 72 65 01 00 08 67 65 74 43 6c 61 73 73 01 00 13 28 29 4c 6a 61 76 61 2f 6c 61 6e 67 eature...getClass...()Ljava/lang
0b00 2f 43 6c 61 73 73 3b 01 00 1d 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 46 65 61 74 75 72 /Class;...joelib2/feature/Featur
0b20 65 48 65 6c 70 65 72 01 00 13 67 65 6e 65 72 61 74 65 46 65 61 74 75 72 65 49 6e 66 6f 01 00 6b eHelper...generateFeatureInfo..k
0b40 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 43 6c 61 73 73 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 (Ljava/lang/Class;Ljava/lang/Str
0b60 69 6e 67 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 61 76 61 2f 6c 61 6e 67 ing;Ljava/lang/String;Ljava/lang
0b80 2f 53 74 72 69 6e 67 3b 29 4c 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 42 61 73 69 63 46 /String;)Ljoelib2/feature/BasicF
0ba0 65 61 74 75 72 65 49 6e 66 6f 3b 01 00 23 6a 6f 65 6c 69 62 32 2f 64 61 74 61 2f 49 64 65 6e 74 eatureInfo;..#joelib2/data/Ident
0bc0 69 66 69 65 72 45 78 70 65 72 74 53 79 73 74 65 6d 01 00 0f 74 72 61 6e 73 66 6f 72 6d 43 56 53 ifierExpertSystem...transformCVS
0be0 74 61 67 01 00 26 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 61 76 61 2f tag..&(Ljava/lang/String;)Ljava/
0c00 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 1d 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 52 lang/String;...joelib2/feature/R
0c20 65 73 75 6c 74 46 61 63 74 6f 72 79 01 00 08 69 6e 73 74 61 6e 63 65 01 00 21 28 29 4c 6a 6f 65 esultFactory...instance..!()Ljoe
0c40 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 52 65 73 75 6c 74 46 61 63 74 6f 72 79 3b 01 00 20 6a 6f lib2/feature/ResultFactory;...jo
0c60 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 42 61 73 69 63 46 65 61 74 75 72 65 49 6e 66 6f 01 00 elib2/feature/BasicFeatureInfo..
0c80 10 67 65 74 46 65 61 74 75 72 65 52 65 73 75 6c 74 01 00 33 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f .getFeatureResult..3(Ljava/lang/
0ca0 53 74 72 69 6e 67 3b 29 4c 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 46 65 61 74 75 72 65 String;)Ljoelib2/feature/Feature
0cc0 52 65 73 75 6c 74 3b 01 00 06 61 70 70 65 6e 64 01 00 2d 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 Result;...append..-(Ljava/lang/S
0ce0 74 72 69 6e 67 3b 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 3b tring;)Ljava/lang/StringBuilder;
0d00 01 00 08 74 6f 53 74 72 69 6e 67 01 00 19 6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 ...toString...org/apache/log4j/C
0d20 61 74 65 67 6f 72 79 01 00 05 65 72 72 6f 72 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 ategory...error...(Ljava/lang/Ob
0d40 6a 65 63 74 3b 29 56 01 00 07 69 73 45 6d 70 74 79 01 00 05 76 61 6c 75 65 01 00 01 44 01 00 08 ject;)V...isEmpty...value...D...
0d60 67 65 74 54 69 74 6c 65 01 00 1c 28 44 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 getTitle...(D)Ljava/lang/StringB
0d80 75 69 6c 64 65 72 3b 01 00 04 77 61 72 6e 01 00 0c 61 74 6f 6d 50 72 6f 70 65 72 74 79 01 00 05 uilder;...warn...atomProperty...
0da0 63 6c 6f 6e 65 01 00 28 28 5a 5b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a clone..((Z[Ljava/lang/String;)Lj
0dc0 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 01 00 0f 64 65 6c 65 74 65 48 79 64 72 6f 67 65 ava/lang/Object;...deleteHydroge
0de0 6e 73 01 00 21 28 29 4c 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 46 65 61 74 75 72 65 48 ns..!()Ljoelib2/feature/FeatureH
0e00 65 6c 70 65 72 3b 01 00 0b 66 65 61 74 75 72 65 46 72 6f 6d 01 00 4e 28 4c 6a 6f 65 6c 69 62 32 elper;...featureFrom..N(Ljoelib2
0e20 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 /molecule/Molecule;Ljava/lang/St
0e40 72 69 6e 67 3b 29 4c 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 46 65 61 74 75 72 65 52 65 ring;)Ljoelib2/feature/FeatureRe
0e60 73 75 6c 74 3b 01 00 03 5b 5b 49 01 00 0c 67 65 74 41 74 6f 6d 73 53 69 7a 65 01 00 05 28 49 49 sult;...[[I...getAtomsSize...(II
0e80 29 56 01 00 07 67 65 74 41 74 6f 6d 01 00 1a 28 49 29 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 )V...getAtom...(I)Ljoelib2/molec
0ea0 75 6c 65 2f 41 74 6f 6d 3b 01 00 15 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 41 74 6f ule/Atom;...joelib2/molecule/Ato
0ec0 6d 01 00 0f 6e 62 72 41 74 6f 6d 49 74 65 72 61 74 6f 72 01 00 29 28 29 4c 6a 6f 65 6c 69 62 32 m...nbrAtomIterator..)()Ljoelib2
0ee0 2f 75 74 69 6c 2f 69 74 65 72 61 74 6f 72 2f 4e 62 72 41 74 6f 6d 49 74 65 72 61 74 6f 72 3b 01 /util/iterator/NbrAtomIterator;.
0f00 00 25 6a 6f 65 6c 69 62 32 2f 75 74 69 6c 2f 69 74 65 72 61 74 6f 72 2f 4e 62 72 41 74 6f 6d 49 .%joelib2/util/iterator/NbrAtomI
0f20 74 65 72 61 74 6f 72 01 00 07 68 61 73 4e 65 78 74 01 00 0b 6e 65 78 74 4e 62 72 41 74 6f 6d 01 terator...hasNext...nextNbrAtom.
0f40 00 19 28 29 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 41 74 6f 6d 3b 01 00 08 67 65 ..()Ljoelib2/molecule/Atom;...ge
0f60 74 49 6e 64 65 78 01 00 03 73 65 74 01 00 06 28 49 49 44 29 56 01 00 06 28 5b 5b 44 29 56 01 00 tIndex...set...(IID)V...([[D)V..
0f80 05 74 69 6d 65 73 01 00 26 28 4c 6a 6d 61 74 2f 64 61 74 61 2f 4d 61 74 72 69 78 3b 29 4c 6a 6d .times..&(Ljmat/data/Matrix;)Ljm
0fa0 61 74 2f 64 61 74 61 2f 4d 61 74 72 69 78 3b 01 00 03 67 65 74 01 00 05 28 49 49 29 44 01 00 0e at/data/Matrix;...get...(II)D...
0fc0 67 65 74 44 6f 75 62 6c 65 56 61 6c 75 65 01 00 04 28 49 29 44 01 00 12 67 65 74 44 65 73 63 72 getDoubleValue...(I)D...getDescr
0fe0 69 70 74 69 6f 6e 46 69 6c 65 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b iptionFile...(Ljava/lang/String;
1000 29 56 01 00 15 67 65 74 44 65 70 65 6e 64 65 6e 63 79 54 72 65 65 48 61 73 68 01 00 15 28 4c 6a )V...getDependencyTreeHash...(Lj
1020 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 49 01 00 1b 6a 6f 65 6c 69 62 32 2f 75 74 69 ava/lang/String;)I...joelib2/uti
1040 6c 2f 50 72 6f 70 65 72 74 79 48 65 6c 70 65 72 01 00 0f 63 68 65 63 6b 50 72 6f 70 65 72 74 69 l/PropertyHelper...checkProperti
1060 65 73 01 00 31 28 4c 6a 6f 65 6c 69 62 32 2f 75 74 69 6c 2f 50 72 6f 70 65 72 74 79 41 63 63 65 es..1(Ljoelib2/util/PropertyAcce
1080 70 74 6f 72 3b 4c 6a 61 76 61 2f 75 74 69 6c 2f 4d 61 70 3b 29 5a 01 00 0b 67 65 74 50 72 6f 70 ptor;Ljava/util/Map;)Z...getProp
10a0 65 72 74 79 01 00 54 28 4c 6a 6f 65 6c 69 62 32 2f 75 74 69 6c 2f 50 72 6f 70 65 72 74 79 41 63 erty..T(Ljoelib2/util/PropertyAc
10c0 63 65 70 74 6f 72 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 61 76 61 2f 75 ceptor;Ljava/lang/String;Ljava/u
10e0 74 69 6c 2f 4d 61 70 3b 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 01 00 0b 67 65 til/Map;)Ljava/lang/Object;...ge
1100 74 49 6e 73 74 61 6e 63 65 01 00 2f 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 tInstance../(Ljava/lang/String;)
1120 4c 6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 3b 01 00 4c 28 4c Lorg/apache/log4j/Category;..L(L
1140 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 java/lang/String;Ljava/lang/Stri
1160 6e 67 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 5a 4c 6a 61 76 61 2f 6c 61 6e 67 ng;Ljava/lang/String;ZLjava/lang
1180 2f 4f 62 6a 65 63 74 3b 29 56 00 21 00 08 00 62 00 01 00 63 00 09 00 1a 00 64 00 65 00 01 00 66 /Object;)V.!...b...c.....d.e...f
11a0 00 00 00 02 00 0a 00 1a 00 67 00 65 00 01 00 66 00 00 00 02 00 0b 00 1a 00 68 00 65 00 01 00 66 .........g.e...f.........h.e...f
11c0 00 00 00 02 00 0d 00 0a 00 69 00 6a 00 00 00 19 00 6b 00 65 00 01 00 66 00 00 00 02 00 57 00 1a .........i.j.....k.e...f.....W..
11e0 00 6c 00 6d 00 00 00 1a 00 6e 00 6f 00 00 00 02 00 70 00 71 00 00 00 02 00 72 00 65 00 00 00 12 .l.m.....n.o.....p.q.....r.e....
1200 00 01 00 73 00 74 00 01 00 75 00 00 00 21 00 05 00 01 00 00 00 15 2a b7 00 01 2a 2a b6 00 02 12 ...s.t...u...!........*...**....
1220 03 01 12 04 b8 00 05 b5 00 06 b1 00 00 00 00 00 09 00 76 00 77 00 01 00 75 00 00 00 10 00 01 00 ..................v.w...u.......
1240 00 00 00 00 04 b2 00 07 b0 00 00 00 00 00 09 00 78 00 79 00 01 00 75 00 00 00 13 00 01 00 00 00 ................x.y...u.........
1260 00 00 07 13 00 08 b6 00 09 b0 00 00 00 00 00 09 00 7a 00 79 00 01 00 75 00 00 00 0f 00 01 00 00 .................z.y...u........
1280 00 00 00 03 12 0a b0 00 00 00 00 00 09 00 7b 00 79 00 01 00 75 00 00 00 12 00 01 00 00 00 00 00 ..............{.y...u...........
12a0 06 12 0b b8 00 0c b0 00 00 00 00 00 09 00 7c 00 79 00 01 00 75 00 00 00 12 00 01 00 00 00 00 00 ..............|.y...u...........
12c0 06 12 0d b8 00 0c b0 00 00 00 00 00 01 00 7d 00 7e 00 01 00 75 00 00 00 10 00 01 00 01 00 00 00 ..............}.~...u...........
12e0 04 b2 00 0e b0 00 00 00 00 00 01 00 7f 00 80 00 02 00 75 00 00 00 22 00 04 00 03 00 00 00 16 b8 ..................u...".........
1300 00 0f 2a b4 00 06 b6 00 10 b6 00 11 4d 2a 2b 2c 01 b6 00 12 b0 00 00 00 00 00 81 00 00 00 04 00 ..*.........M*+,................
1320 01 00 36 00 01 00 7f 00 82 00 02 00 75 00 00 00 22 00 04 00 04 00 00 00 16 b8 00 0f 2a b4 00 06 ..6.........u..."...........*...
1340 b6 00 10 b6 00 11 4e 2a 2b 2d 2c b6 00 12 b0 00 00 00 00 00 81 00 00 00 04 00 01 00 36 00 01 00 ......N*+-,.................6...
1360 7f 00 83 00 02 00 75 00 00 00 14 00 04 00 03 00 00 00 08 2a 2b 2c 01 b6 00 12 b0 00 00 00 00 00 ......u............*+,..........
1380 81 00 00 00 04 00 01 00 36 00 01 00 7f 00 84 00 02 00 75 00 00 04 42 00 0a 00 1c 00 00 04 2e 01 ........6.........u...B.........
13a0 3a 04 2c c1 00 13 9a 00 3c b2 00 14 bb 00 15 59 b7 00 16 2a b4 00 06 b6 00 10 b6 00 17 12 18 b6 :.,.....<......Y...*............
13c0 00 17 13 00 13 b6 00 09 b6 00 17 12 19 b6 00 17 2c b6 00 02 b6 00 1a b6 00 17 b6 00 1b b6 00 1c ................,...............
13e0 01 b0 2c c0 00 13 3a 04 2a 2d b6 00 1d 9a 00 05 01 b0 2b b9 00 1e 01 00 99 00 4d 19 04 14 00 1f ..,...:.*-........+.......M.....
1400 b5 00 21 b2 00 14 bb 00 15 59 b7 00 16 12 22 b6 00 17 2b b9 00 23 01 00 b6 00 17 12 24 b6 00 17 ..!......Y...."...+..#......$...
1420 b8 00 25 b6 00 17 12 26 b6 00 17 19 04 b4 00 21 b6 00 27 b6 00 1b b6 00 28 19 04 2a b4 00 29 b5 ..%....&.......!..'.....(..*..).
1440 00 2a 19 04 b0 2b 04 04 bd 00 2b 59 03 2a b4 00 29 53 b9 00 2c 03 00 c0 00 2d 3a 05 19 05 b9 00 .*...+....+Y.*..)S..,....-:.....
1460 2e 01 00 57 b8 00 2f 19 05 2a b4 00 29 b6 00 30 3a 06 19 06 c1 00 31 99 00 0d 19 06 c0 00 31 3a ...W../..*..)..0:.....1.......1:
1480 07 a7 00 31 b2 00 14 bb 00 15 59 b7 00 16 12 32 b6 00 17 2a b4 00 29 b6 00 17 12 33 b6 00 17 b8 ...1......Y....2...*..)....3....
14a0 00 25 b6 00 17 12 34 b6 00 17 b6 00 1b b6 00 1c 01 b0 01 3a 08 b8 00 2f 19 05 b8 00 35 b6 00 30 .%....4............:.../....5..0
14c0 3a 08 a7 00 32 3a 09 b2 00 14 19 09 b6 00 37 b6 00 1c b2 00 14 bb 00 15 59 b7 00 16 12 38 b6 00 :...2:........7.........Y....8..
14e0 17 b8 00 25 b6 00 17 12 34 b6 00 17 b6 00 1b b6 00 1c 01 b0 19 08 c1 00 39 9a 00 3e b2 00 14 bb ...%....4...............9..>....
1500 00 15 59 b7 00 16 12 3a b6 00 17 b8 00 35 b6 00 17 12 3b b6 00 17 13 00 39 b6 00 09 b6 00 17 12 ..Y....:.....5....;.....9.......
1520 3c b6 00 17 b8 00 25 b6 00 17 12 3d b6 00 17 b6 00 1b b6 00 1c 01 b0 19 08 c0 00 39 3a 09 19 09 <.....%....=...............9:...
1540 b4 00 3e 3a 0a bb 00 3f 59 19 05 b9 00 40 01 00 19 05 b9 00 40 01 00 b7 00 41 3a 0b 04 36 0e 15 ..>:...?Y....@......@....A:..6..
1560 0e 19 05 b9 00 40 01 00 a3 00 63 19 05 15 0e b9 00 42 02 00 3a 0c 19 0c b9 00 43 01 00 3a 0f 19 .....@....c......B..:.....C..:..
1580 0f b9 00 44 01 00 99 00 3f 19 0f b9 00 45 01 00 3a 0d 19 0b 19 0c b9 00 46 01 00 04 64 19 0d b9 ...D....?....E..:.......F...d...
15a0 00 46 01 00 04 64 0f b6 00 47 19 0b 19 0d b9 00 46 01 00 04 64 19 0c b9 00 46 01 00 04 64 0f b6 .F...d...G......F...d....F...d..
15c0 00 47 a7 ff bd 84 0e 01 a7 ff 97 19 0a be 19 0a 03 32 be c5 00 48 02 3a 0e 19 0a be 19 0a 03 32 .G...............2...H.:.......2
15e0 be c5 00 48 02 3a 0f 03 36 10 15 10 19 0a be a2 00 5b 03 36 11 15 11 19 0a 15 10 32 be a2 00 47 ...H.:..6........[.6.......2...G
1600 19 0e 15 10 32 15 11 19 0a 15 10 32 15 11 2e 87 52 19 0a 15 10 32 15 11 2e 87 39 12 18 12 0e 97 ....2......2....R....2....9.....
1620 99 00 15 19 0f 15 10 32 15 11 0f 18 12 18 12 6b 6f 52 a7 00 0c 19 0f 15 10 32 15 11 0e 52 84 11 .......2.......koR.......2...R..
1640 01 a7 ff b4 84 10 01 a7 ff a3 bb 00 3f 59 19 0e b7 00 49 3a 10 bb 00 3f 59 19 0f b7 00 49 3a 11 ............?Y....I:...?Y....I:.
1660 19 0b 19 11 b6 00 4a 3a 12 bb 00 3f 59 19 05 b9 00 40 01 00 19 05 b9 00 40 01 00 b7 00 41 3a 13 ......J:...?Y....@......@....A:.
1680 03 36 14 15 14 19 05 b9 00 40 01 00 a2 00 55 03 36 15 15 15 19 05 b9 00 40 01 00 a2 00 40 19 13 .6.......@....U.6.......@....@..
16a0 15 14 15 15 19 12 15 14 15 15 b6 00 4b 19 12 15 15 15 14 b6 00 4b 67 b6 00 47 15 14 15 15 a0 00 ............K........Kg..G......
16c0 17 19 13 15 14 15 15 19 07 15 14 04 60 b9 00 4c 02 00 b6 00 47 84 15 01 a7 ff ba 84 14 01 a7 ff ............`..L....G...........
16e0 a5 19 05 b9 00 40 01 00 bc 07 3a 14 03 36 15 15 15 19 05 b9 00 40 01 00 a2 00 73 03 36 16 15 16 .....@....:..6.......@....s.6...
1700 19 05 b9 00 40 01 00 a2 00 5e 03 36 17 15 17 19 05 b9 00 40 01 00 a2 00 49 19 13 15 16 15 17 b6 ....@....^.6.......@....I.......
1720 00 4b 39 18 18 18 0e 98 9c 00 0b 18 18 14 00 4d 6b 39 18 0e 39 1a 15 15 19 10 15 16 15 17 b6 00 .K9............Mk9..9...........
1740 4b 8e a0 00 06 0f 39 1a 19 14 15 15 5c 31 14 00 4f 18 18 18 1a 6b 6b 63 52 84 17 01 a7 ff b1 84 K.....9.....\1..O....kkcR.......
1760 16 01 a7 ff 9c 84 15 01 a7 ff 87 19 05 b9 00 40 01 00 bc 07 3a 15 03 36 16 15 16 19 15 be a2 00 ...............@....:..6........
1780 1e 19 15 15 16 19 14 15 16 31 19 05 b9 00 40 01 00 04 64 87 6f 52 84 16 01 a7 ff e0 0e 39 16 03 .........1....@...d.oR.......9..
17a0 36 18 15 18 19 15 be a2 00 13 18 16 19 15 15 18 31 63 39 16 84 18 01 a7 ff eb 19 04 18 16 b5 00 6...............1c9.............
17c0 21 19 04 2a b4 00 29 b5 00 2a 19 04 b0 00 01 01 16 01 23 01 26 00 36 00 00 00 81 00 00 00 04 00 !..*..)..*........#.&.6.........
17e0 01 00 36 00 01 00 85 00 74 00 01 00 75 00 00 00 0d 00 00 00 01 00 00 00 01 b1 00 00 00 00 00 01 ..6.....t...u...................
1800 00 86 00 87 00 01 00 75 00 00 00 11 00 01 00 01 00 00 00 05 2a b4 00 06 b0 00 00 00 00 00 01 00 .......u............*...........
1820 88 00 89 00 01 00 75 00 00 00 1b 00 03 00 01 00 00 00 0f bb 00 51 59 2a b4 00 06 b6 00 52 b7 00 ......u..............QY*.....R..
1840 53 b0 00 00 00 00 00 01 00 8a 00 8b 00 01 00 75 00 00 00 13 00 01 00 01 00 00 00 07 b8 00 25 b8 S..............u..............%.
1860 00 54 ac 00 00 00 00 00 01 00 8c 00 8d 00 01 00 75 00 00 00 3e 00 03 00 03 00 00 00 32 2a 2b b8 .T..............u...>.......2*+.
1880 00 55 9a 00 0d b2 00 14 12 56 b6 00 1c 03 ac 2a 12 57 2b b8 00 58 c0 00 2b 4d 2c c7 00 0d 2a b8 .U.......V.....*.W+..X..+M,...*.
18a0 00 59 b5 00 29 a7 00 08 2a 2c b5 00 29 04 ac 00 00 00 00 00 01 00 8e 00 8f 00 01 00 75 00 00 00 .Y..)...*,..)...............u...
18c0 0e 00 01 00 01 00 00 00 02 04 ac 00 00 00 00 00 08 00 90 00 74 00 01 00 75 00 00 00 47 00 0a 00 ....................t...u...G...
18e0 00 00 00 00 3b 13 00 08 b6 00 09 b8 00 5a b3 00 14 04 bd 00 5b 59 03 bb 00 5b 59 12 57 12 5c 12 ....;........Z......[Y...[Y.W.\.
1900 5d 04 b8 00 59 b7 00 5e 53 b3 00 0e 05 bd 00 5f 59 03 13 00 60 53 59 04 13 00 61 53 b3 00 07 b1 ]...Y..^S......_Y...`SY...aS....
1920 00 00 00 00 00 00 ......