summaryrefslogtreecommitdiff
path: root/java/joelib2/feature/types/atomlabel/AtomType.class
blob: 8b42f26ce6631c07e75840ba8f464b7e3fa43857 (plain)
ofshex dumpascii
0000 ca fe ba be 00 00 00 31 00 ad 0a 00 2f 00 4c 09 00 17 00 4d 0a 00 4e 00 4f 07 00 50 0a 00 04 00 .......1..../.L....M..N.O..P....
0020 4c 08 00 51 0a 00 04 00 52 0a 00 53 00 54 0a 00 2d 00 55 0a 00 04 00 56 0a 00 4e 00 57 08 00 58 L..Q....R..S.T..-.U....V..N.W..X
0040 08 00 59 0a 00 5a 00 5b 09 00 17 00 5c 08 00 5d 0a 00 17 00 55 0a 00 5e 00 5f 07 00 60 0a 00 13 ..Y..Z.[....\..]....U..^._..`...
0060 00 61 0a 00 4e 00 62 09 00 17 00 63 07 00 64 08 00 65 08 00 66 0a 00 67 00 68 08 00 69 0b 00 6a .a..N.b....c..d..e..f..g.h..i..j
0080 00 6b 0b 00 6c 00 6d 0a 00 5a 00 6e 0a 00 5a 00 6f 07 00 70 07 00 71 0a 00 21 00 72 0b 00 6a 00 .k..l.m..Z.n..Z.o..p..q..!.r..j.
00a0 73 0b 00 20 00 74 08 00 75 08 00 76 0b 00 6c 00 77 07 00 78 0a 00 2e 00 79 0a 00 2e 00 7a 0a 00 s....t..u..v..l.w..x....y....z..
00c0 67 00 7b 0a 00 4e 00 7c 07 00 7d 07 00 7e 07 00 7f 01 00 06 56 45 4e 44 4f 52 01 00 12 4c 6a 61 g.{..N.|..}..~......VENDOR...Lja
00e0 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 0d 43 6f 6e 73 74 61 6e 74 56 61 6c 75 65 01 va/lang/String;...ConstantValue.
0100 00 0f 52 45 4c 45 41 53 45 5f 56 45 52 53 49 4f 4e 01 00 0c 52 45 4c 45 41 53 45 5f 44 41 54 45 ..RELEASE_VERSION...RELEASE_DATE
0120 01 00 06 6c 6f 67 67 65 72 01 00 1b 4c 6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 ...logger...Lorg/apache/log4j/Ca
0140 74 65 67 6f 72 79 3b 01 00 0c 44 45 50 45 4e 44 45 4e 43 49 45 53 01 00 12 5b 4c 6a 61 76 61 2f tegory;...DEPENDENCIES...[Ljava/
0160 6c 61 6e 67 2f 43 6c 61 73 73 3b 01 00 06 3c 69 6e 69 74 3e 01 00 03 28 29 56 01 00 04 43 6f 64 lang/Class;...<init>...()V...Cod
0180 65 01 00 0b 67 65 74 41 74 6f 6d 54 79 70 65 01 00 2b 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 e...getAtomType..+(Ljoelib2/mole
01a0 63 75 6c 65 2f 41 74 6f 6d 3b 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 0f cule/Atom;)Ljava/lang/String;...
01c0 67 65 74 44 65 70 65 6e 64 65 6e 63 69 65 73 01 00 14 28 29 5b 4c 6a 61 76 61 2f 6c 61 6e 67 2f getDependencies...()[Ljava/lang/
01e0 43 6c 61 73 73 3b 01 00 07 67 65 74 4e 61 6d 65 01 00 14 28 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f Class;...getName...()Ljava/lang/
0200 53 74 72 69 6e 67 3b 01 00 0e 67 65 74 52 65 6c 65 61 73 65 44 61 74 65 01 00 11 67 65 74 52 65 String;...getReleaseDate...getRe
0220 6c 65 61 73 65 56 65 72 73 69 6f 6e 01 00 09 67 65 74 56 65 6e 64 6f 72 01 00 0b 73 65 74 41 74 leaseVersion...getVendor...setAt
0240 6f 6d 54 79 70 65 01 00 2c 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 41 74 6f 6d omType..,(Ljoelib2/molecule/Atom
0260 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 56 01 00 17 67 65 74 53 74 72 69 6e ;Ljava/lang/String;)V...getStrin
0280 67 41 74 6f 6d 50 72 6f 70 65 72 74 69 65 73 01 00 5a 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 gAtomProperties..Z(Ljoelib2/mole
02a0 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 74 79 70 65 73 2f cule/Molecule;Ljoelib2/io/types/
02c0 63 6d 6c 2f 52 65 73 75 6c 74 43 4d 4c 50 72 6f 70 65 72 74 69 65 73 3b 29 5b 4c 6a 61 76 61 2f cml/ResultCMLProperties;)[Ljava/
02e0 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 1b 68 61 73 68 65 64 44 65 70 65 6e 64 65 6e 63 79 54 lang/String;...hashedDependencyT
0300 72 65 65 56 65 72 73 69 6f 6e 01 00 03 28 29 49 01 00 08 3c 63 6c 69 6e 69 74 3e 0c 00 39 00 3a reeVersion...()I...<clinit>..9.:
0320 0c 00 35 00 36 07 00 80 0c 00 81 00 82 01 00 17 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 ..5.6...........java/lang/String
0340 42 75 69 6c 64 65 72 01 00 0b 49 6e 69 74 69 61 6c 69 7a 65 20 0c 00 83 00 84 07 00 85 0c 00 86 Builder...Initialize............
0360 00 87 0c 00 40 00 41 0c 00 88 00 41 0c 00 89 00 8a 01 00 0e 6e 6f 5f 63 6f 6f 72 64 69 6e 61 74 ....@.A....A........no_coordinat
0380 65 73 01 00 27 6a 6f 65 6c 69 62 32 2e 66 65 61 74 75 72 65 2e 72 65 73 75 6c 74 2e 41 74 6f 6d es..'joelib2.feature.result.Atom
03a0 53 74 72 69 6e 67 52 65 73 75 6c 74 07 00 8b 0c 00 8c 00 8d 0c 00 8e 00 8f 01 00 00 07 00 90 0c StringResult....................
03c0 00 91 00 92 01 00 20 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 46 65 61 74 75 72 65 45 78 .......joelib2/feature/FeatureEx
03e0 63 65 70 74 69 6f 6e 0c 00 93 00 41 0c 00 94 00 8a 0c 00 37 00 38 01 00 28 6a 6f 65 6c 69 62 32 ception....A.......7.8..(joelib2
0400 2f 66 65 61 74 75 72 65 2f 74 79 70 65 73 2f 61 74 6f 6d 6c 61 62 65 6c 2f 41 74 6f 6d 54 79 70 /feature/types/atomlabel/AtomTyp
0420 65 01 00 14 68 74 74 70 3a 2f 2f 6a 6f 65 6c 69 62 2e 73 66 2e 6e 65 74 01 00 11 24 52 65 76 69 e...http://joelib.sf.net...$Revi
0440 73 69 6f 6e 3a 20 31 2e 31 33 20 24 07 00 95 0c 00 96 00 97 01 00 1c 24 44 61 74 65 3a 20 32 30 sion:.1.13.$...........$Date:.20
0460 30 35 2f 30 32 2f 31 37 20 31 36 3a 34 38 3a 33 31 20 24 07 00 98 0c 00 99 00 9a 07 00 9b 0c 00 05/02/17.16:48:31.$.............
0480 9c 00 4a 0c 00 9d 00 9e 0c 00 9f 00 a0 01 00 25 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 ..J............%joelib2/molecule
04a0 2f 74 79 70 65 73 2f 41 74 6f 6d 50 72 6f 70 65 72 74 69 65 73 01 00 1a 6a 61 76 61 2f 6c 61 6e /types/AtomProperties...java/lan
04c0 67 2f 52 75 6e 74 69 6d 65 45 78 63 65 70 74 69 6f 6e 0c 00 39 00 a1 0c 00 a2 00 4a 0c 00 a3 00 g/RuntimeException..9......J....
04e0 a4 01 00 37 4e 6f 20 61 75 74 6f 6d 61 74 69 63 20 61 73 73 69 67 6e 65 64 20 61 74 6f 6d 20 74 ...7No.automatic.assigned.atom.t
0500 79 70 65 20 69 6e 66 6f 72 6d 61 74 69 6f 6e 73 20 61 76 61 69 6c 61 62 6c 65 2e 01 00 41 43 6f ype.informations.available...ACo
0520 75 6c 64 20 6e 6f 74 20 61 63 63 65 73 73 20 61 74 6f 6d 20 70 72 6f 70 65 72 74 79 2e 20 4d 6f uld.not.access.atom.property..Mo
0540 64 69 66 69 63 61 74 69 6f 6e 20 63 6f 75 6e 74 65 72 20 69 73 20 6e 6f 74 20 7a 65 72 6f 2e 0c dification.counter.is.not.zero..
0560 00 a5 00 4a 01 00 10 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 0c 00 9d 00 a6 0c 00 a7 00 ...J...java/lang/String.........
0580 a8 0c 00 a9 00 aa 0c 00 ab 00 ac 01 00 0f 6a 61 76 61 2f 6c 61 6e 67 2f 43 6c 61 73 73 01 00 1b ..............java/lang/Class...
05a0 6a 6f 65 6c 69 62 32 2f 64 61 74 61 2f 42 61 73 69 63 41 74 6f 6d 54 79 70 65 72 01 00 2a 6a 6f joelib2/data/BasicAtomTyper..*jo
05c0 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 41 62 73 74 72 61 63 74 53 74 72 69 6e 67 41 74 6f 6d elib2/feature/AbstractStringAtom
05e0 50 72 6f 70 65 72 74 79 01 00 19 6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 Property...org/apache/log4j/Cate
0600 67 6f 72 79 01 00 0e 69 73 44 65 62 75 67 45 6e 61 62 6c 65 64 01 00 03 28 29 5a 01 00 06 61 70 gory...isDebugEnabled...()Z...ap
0620 70 65 6e 64 01 00 2d 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 61 76 61 pend..-(Ljava/lang/String;)Ljava
0640 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 3b 01 00 10 6a 61 76 61 2f 6c 61 6e 67 /lang/StringBuilder;...java/lang
0660 2f 4f 62 6a 65 63 74 01 00 08 67 65 74 43 6c 61 73 73 01 00 13 28 29 4c 6a 61 76 61 2f 6c 61 6e /Object...getClass...()Ljava/lan
0680 67 2f 43 6c 61 73 73 3b 01 00 08 74 6f 53 74 72 69 6e 67 01 00 05 64 65 62 75 67 01 00 15 28 4c g/Class;...toString...debug...(L
06a0 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 29 56 01 00 1d 6a 6f 65 6c 69 62 32 2f 66 65 java/lang/Object;)V...joelib2/fe
06c0 61 74 75 72 65 2f 46 65 61 74 75 72 65 48 65 6c 70 65 72 01 00 13 67 65 6e 65 72 61 74 65 46 65 ature/FeatureHelper...generateFe
06e0 61 74 75 72 65 49 6e 66 6f 01 00 6b 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 43 6c 61 73 73 3b 4c 6a atureInfo..k(Ljava/lang/Class;Lj
0700 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e ava/lang/String;Ljava/lang/Strin
0720 67 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 6f 65 6c 69 62 32 2f 66 65 g;Ljava/lang/String;)Ljoelib2/fe
0740 61 74 75 72 65 2f 42 61 73 69 63 46 65 61 74 75 72 65 49 6e 66 6f 3b 01 00 08 64 65 73 63 49 6e ature/BasicFeatureInfo;...descIn
0760 66 6f 01 00 22 4c 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 42 61 73 69 63 46 65 61 74 75 fo.."Ljoelib2/feature/BasicFeatu
0780 72 65 49 6e 66 6f 3b 01 00 29 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 74 79 70 65 73 reInfo;..)joelib2/molecule/types
07a0 2f 41 74 6f 6d 50 72 6f 70 65 72 74 79 48 65 6c 70 65 72 01 00 15 67 65 74 53 74 72 69 6e 67 41 /AtomPropertyHelper...getStringA
07c0 74 6f 6d 50 72 6f 70 65 72 74 79 01 00 3d 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 tomProperty..=(Ljoelib2/molecule
07e0 2f 41 74 6f 6d 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 61 76 61 2f 6c /Atom;Ljava/lang/String;)Ljava/l
0800 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 0a 67 65 74 4d 65 73 73 61 67 65 01 00 05 65 72 72 6f 72 ang/String;...getMessage...error
0820 01 00 23 6a 6f 65 6c 69 62 32 2f 64 61 74 61 2f 49 64 65 6e 74 69 66 69 65 72 45 78 70 65 72 74 ..#joelib2/data/IdentifierExpert
0840 53 79 73 74 65 6d 01 00 0f 74 72 61 6e 73 66 6f 72 6d 43 56 53 74 61 67 01 00 26 28 4c 6a 61 76 System...transformCVStag..&(Ljav
0860 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 a/lang/String;)Ljava/lang/String
0880 3b 01 00 15 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 41 74 6f 6d 01 00 09 67 65 74 50 ;...joelib2/molecule/Atom...getP
08a0 61 72 65 6e 74 01 00 1d 28 29 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 arent...()Ljoelib2/molecule/Mole
08c0 63 75 6c 65 3b 01 00 19 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c cule;...joelib2/molecule/Molecul
08e0 65 01 00 16 67 65 74 4d 6f 64 69 66 69 63 61 74 69 6f 6e 43 6f 75 6e 74 65 72 01 00 08 69 6e 73 e...getModificationCounter...ins
0900 74 61 6e 63 65 01 00 21 28 29 4c 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 46 65 61 74 75 tance..!()Ljoelib2/feature/Featu
0920 72 65 48 65 6c 70 65 72 3b 01 00 0b 66 65 61 74 75 72 65 46 72 6f 6d 01 00 4e 28 4c 6a 6f 65 6c reHelper;...featureFrom..N(Ljoel
0940 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 4c 6a 61 76 61 2f 6c 61 6e 67 ib2/molecule/Molecule;Ljava/lang
0960 2f 53 74 72 69 6e 67 3b 29 4c 6a 6f 65 6c 69 62 32 2f 66 65 61 74 75 72 65 2f 46 65 61 74 75 72 /String;)Ljoelib2/feature/Featur
0980 65 52 65 73 75 6c 74 3b 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 56 eResult;...(Ljava/lang/String;)V
09a0 01 00 08 67 65 74 49 6e 64 65 78 01 00 0e 73 65 74 53 74 72 69 6e 67 56 61 6c 75 65 01 00 16 28 ...getIndex...setStringValue...(
09c0 49 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 56 01 00 0c 67 65 74 41 74 6f 6d 73 ILjava/lang/String;)V...getAtoms
09e0 53 69 7a 65 01 00 1f 28 29 4c 6a 6f 65 6c 69 62 32 2f 64 61 74 61 2f 42 61 73 69 63 41 74 6f 6d Size...()Ljoelib2/data/BasicAtom
0a00 54 79 70 65 72 3b 01 00 0c 67 65 74 41 74 6f 6d 54 79 70 65 73 01 00 31 28 4c 6a 6f 65 6c 69 62 Typer;...getAtomTypes..1(Ljoelib
0a20 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 5b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 2/molecule/Molecule;[Ljava/lang/
0a40 53 74 72 69 6e 67 3b 29 56 01 00 15 67 65 74 44 65 70 65 6e 64 65 6e 63 79 54 72 65 65 48 61 73 String;)V...getDependencyTreeHas
0a60 68 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 49 01 00 0b 67 65 74 49 h...(Ljava/lang/String;)I...getI
0a80 6e 73 74 61 6e 63 65 01 00 2f 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6f nstance../(Ljava/lang/String;)Lo
0aa0 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 3b 00 21 00 17 00 2f 00 rg/apache/log4j/Category;.!.../.
0ac0 00 00 05 00 1a 00 30 00 31 00 01 00 32 00 00 00 02 00 18 00 1a 00 33 00 31 00 01 00 32 00 00 00 ......0.1...2.........3.1...2...
0ae0 02 00 19 00 1a 00 34 00 31 00 01 00 32 00 00 00 02 00 1b 00 0a 00 35 00 36 00 00 00 1a 00 37 00 ......4.1...2.........5.6.....7.
0b00 38 00 00 00 0b 00 01 00 39 00 3a 00 01 00 3b 00 00 00 49 00 05 00 01 00 00 00 3d 2a b7 00 01 b2 8.......9.:...;...I.......=*....
0b20 00 02 b6 00 03 99 00 22 b2 00 02 bb 00 04 59 b7 00 05 12 06 b6 00 07 2a b6 00 08 b6 00 09 b6 00 ......."......Y........*........
0b40 07 b6 00 0a b6 00 0b 2a 2a b6 00 08 12 0c 01 12 0d b8 00 0e b5 00 0f b1 00 00 00 00 00 09 00 3c .......**......................<
0b60 00 3d 00 01 00 3b 00 00 00 2f 00 02 00 03 00 00 00 1b 12 10 4c 2a b8 00 11 b8 00 12 4c a7 00 0e .=...;.../..........L*......L...
0b80 4d b2 00 02 2c b6 00 14 b6 00 15 2b b0 00 01 00 03 00 0b 00 0e 00 13 00 00 00 09 00 3e 00 3f 00 M...,......+................>.?.
0ba0 01 00 3b 00 00 00 10 00 01 00 00 00 00 00 04 b2 00 16 b0 00 00 00 00 00 09 00 40 00 41 00 01 00 ..;.......................@.A...
0bc0 3b 00 00 00 13 00 01 00 00 00 00 00 07 13 00 17 b6 00 09 b0 00 00 00 00 00 09 00 42 00 41 00 01 ;..........................B.A..
0be0 00 3b 00 00 00 0f 00 01 00 00 00 00 00 03 12 18 b0 00 00 00 00 00 09 00 43 00 41 00 01 00 3b 00 .;......................C.A...;.
0c00 00 00 12 00 01 00 00 00 00 00 06 12 19 b8 00 1a b0 00 00 00 00 00 09 00 44 00 41 00 01 00 3b 00 ........................D.A...;.
0c20 00 00 12 00 01 00 00 00 00 00 06 12 1b b8 00 1a b0 00 00 00 00 00 09 00 45 00 46 00 01 00 3b 00 ........................E.F...;.
0c40 00 00 7b 00 03 00 05 00 00 00 67 2a c6 00 65 2a b9 00 1c 01 00 4d 2c c6 00 5a 2c b9 00 1d 01 00 ..{.......g*..e*.....M,..Z,.....
0c60 9a 00 47 b8 00 1e 2a b9 00 1c 01 00 b8 00 11 b6 00 1f c0 00 20 4e a7 00 12 3a 04 bb 00 21 59 19 ..G...*..............N...:...!Y.
0c80 04 b6 00 14 b7 00 22 bf 2d c6 00 13 2d 2a b9 00 23 01 00 2b b9 00 24 03 00 a7 00 0b b2 00 02 12 ......".-...-*..#..+..$.........
0ca0 25 b6 00 15 a7 00 0d bb 00 21 59 12 26 b7 00 22 bf b1 00 01 00 18 00 2b 00 2e 00 13 00 00 00 01 %........!Y.&..".......+........
0cc0 00 47 00 48 00 01 00 3b 00 00 00 20 00 03 00 04 00 00 00 14 2b b9 00 27 01 00 bd 00 28 4e b8 00 .G.H...;............+..'....(N..
0ce0 29 2b 2d b6 00 2a 2d b0 00 00 00 00 00 01 00 49 00 4a 00 01 00 3b 00 00 00 13 00 01 00 01 00 00 )+-..*-........I.J...;..........
0d00 00 07 b8 00 11 b8 00 2b ac 00 00 00 00 00 08 00 4b 00 3a 00 01 00 3b 00 00 00 26 00 04 00 00 00 .......+........K.:...;...&.....
0d20 00 00 1a 13 00 17 b6 00 09 b8 00 2c b3 00 02 04 bd 00 2d 59 03 13 00 2e 53 b3 00 16 b1 00 00 00 ...........,......-Y....S.......
0d40 00 00 00 ...