summaryrefslogtreecommitdiff
path: root/java/joelib2/io/types/Smiles.class
blob: 31d215573e57628fee367b15d282a6c6aa3db252 (plain)
ofshex dumpascii
0000 ca fe ba be 00 00 00 31 01 89 0a 00 82 00 b9 09 00 81 00 ba 09 00 81 00 bb 07 00 bc 0a 00 04 00 .......1........................
0020 b9 09 00 81 00 bd 09 00 81 00 be 0a 00 38 00 bf 09 00 81 00 c0 0a 00 3d 00 bf 0a 00 c1 00 c2 0a .............8.........=........
0040 00 c1 00 c3 0a 00 82 00 c4 0a 00 c5 00 c6 07 00 c7 0a 00 0f 00 b9 0a 00 0f 00 c8 08 00 c9 0a 00 ................................
0060 0f 00 ca 08 00 cb 0a 00 cc 00 cd 08 00 ce 08 00 cf 09 00 81 00 d0 08 00 d1 08 00 d2 09 00 81 00 ................................
0080 d3 08 00 d4 08 00 d5 09 00 81 00 d6 0b 00 d7 00 d8 08 00 d9 0a 00 da 00 db 09 00 81 00 dc 09 00 ................................
00a0 81 00 dd 0b 00 d7 00 de 0b 00 d7 00 df 07 00 e0 08 00 e1 0a 00 26 00 e2 08 00 e3 09 00 81 00 e4 .....................&..........
00c0 0a 00 e5 00 e6 08 00 e7 0a 00 0f 00 e8 08 00 e9 0a 00 0f 00 ea 0a 00 e5 00 eb 07 00 ec 08 00 ed ................................
00e0 0a 00 31 00 ee 08 00 8d 0a 00 c1 00 ef 08 00 f0 0a 00 26 00 f1 07 00 f2 07 00 f3 0a 00 39 00 f4 ..1...............&..........9..
0100 0a 00 38 00 f5 0a 00 81 00 f6 07 00 f7 0a 00 3d 00 f8 08 00 f9 09 00 81 00 fa 0a 00 38 00 fb 0a ..8............=............8...
0120 00 81 00 fc 0a 00 04 00 de 07 00 fd 0a 00 44 00 fe 0a 00 44 00 ff 0a 00 26 01 00 0a 00 44 01 01 ..............D....D....&....D..
0140 07 01 02 08 01 03 08 01 04 0a 00 38 01 05 08 01 06 08 01 07 08 01 08 0a 00 49 00 ee 08 01 09 0a ...........8.............I......
0160 00 04 00 df 0a 01 0a 01 0b 0a 00 81 01 0c 08 01 0d 07 01 0e 0a 00 56 00 b9 0a 00 56 01 0f 0a 00 ......................V....V....
0180 56 01 10 0b 00 63 01 11 08 01 12 08 01 13 08 01 14 0a 00 81 01 15 07 01 16 0a 00 5f 00 b9 0a 00 V....c....................._....
01a0 5f 01 17 0b 00 63 01 18 07 01 19 09 00 81 01 1a 0a 00 7d 01 1b 0a 00 7d 01 1c 0a 00 5f 01 1d 0a _....c............}....}...._...
01c0 00 5f 01 1e 0a 00 3d 01 1f 0a 00 3d 01 20 0a 00 3d 01 21 0a 00 44 00 ca 0b 00 63 01 22 0a 00 26 ._....=....=....=.!..D....c."..&
01e0 01 23 08 01 24 0b 00 63 01 25 08 01 26 08 01 27 0a 00 e5 01 28 08 01 29 08 01 2a 0a 01 2b 01 2c .#..$..c.%..&..'....(..)..*..+.,
0200 0a 01 2b 01 2d 0b 01 2e 01 2f 08 01 30 0a 00 e5 01 31 08 01 32 08 01 33 07 01 34 07 01 35 0a 00 ..+.-..../..0....1..2..3..4..5..
0220 7e 00 b9 0a 00 7d 01 36 07 01 37 07 01 38 07 01 39 01 00 06 6c 6f 67 67 65 72 01 00 1b 4c 6f 72 ~....}.6..7..8..9...logger...Lor
0240 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 3b 01 00 0b 64 65 73 63 72 g/apache/log4j/Category;...descr
0260 69 70 74 69 6f 6e 01 00 12 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 0d 43 6f iption...Ljava/lang/String;...Co
0280 6e 73 74 61 6e 74 56 61 6c 75 65 01 00 0a 65 78 74 65 6e 73 69 6f 6e 73 01 00 13 5b 4c 6a 61 76 nstantValue...extensions...[Ljav
02a0 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 06 6d 6f 72 67 61 6e 01 00 1c 4c 6a 6f 65 6c 69 a/lang/String;...morgan...Ljoeli
02c0 62 32 2f 61 6c 67 6f 2f 6d 6f 72 67 61 6e 2f 4d 6f 72 67 61 6e 3b 01 00 09 63 61 6e 6f 6e 69 63 b2/algo/morgan/Morgan;...canonic
02e0 61 6c 01 00 01 5a 01 00 09 64 65 6c 69 6d 69 74 65 72 01 00 0a 69 6e 70 75 74 44 65 6c 69 6d 01 al...Z...delimiter...inputDelim.
0300 00 0d 6c 69 6e 65 53 74 72 75 63 74 75 72 65 01 00 10 4c 6a 61 76 61 2f 75 74 69 6c 2f 4c 69 73 ..lineStructure...Ljava/util/Lis
0320 74 3b 01 00 03 6c 6e 72 01 00 1a 4c 6a 61 76 61 2f 69 6f 2f 4c 69 6e 65 4e 75 6d 62 65 72 52 65 t;...lnr...Ljava/io/LineNumberRe
0340 61 64 65 72 3b 01 00 0b 6f 75 74 70 75 74 44 65 6c 69 6d 01 00 02 70 73 01 00 16 4c 63 66 6f 72 ader;...outputDelim...ps...Lcfor
0360 6d 61 74 2f 50 72 69 6e 74 66 53 74 72 65 61 6d 3b 01 00 0e 73 6d 69 6c 65 73 50 6f 73 69 74 69 mat/PrintfStream;...smilesPositi
0380 6f 6e 01 00 01 49 01 00 0d 73 74 6f 72 65 4c 69 6e 65 49 6e 66 6f 01 00 0d 74 69 74 6c 65 50 6f on...I...storeLineInfo...titlePo
03a0 73 69 74 69 6f 6e 01 00 06 3c 69 6e 69 74 3e 01 00 03 28 29 56 01 00 04 43 6f 64 65 01 00 0b 63 sition...<init>...()V...Code...c
03c0 6c 6f 73 65 52 65 61 64 65 72 01 00 0a 45 78 63 65 70 74 69 6f 6e 73 01 00 0b 63 6c 6f 73 65 57 loseReader...Exceptions...closeW
03e0 72 69 74 65 72 01 00 10 67 65 74 53 74 6f 72 65 4c 69 6e 65 49 6e 66 6f 01 00 03 28 29 5a 01 00 riter...getStoreLineInfo...()Z..
0400 0a 69 6e 69 74 50 61 72 73 65 72 01 00 0a 69 6e 69 74 52 65 61 64 65 72 01 00 18 28 4c 6a 61 76 .initParser...initReader...(Ljav
0420 61 2f 69 6f 2f 49 6e 70 75 74 53 74 72 65 61 6d 3b 29 56 01 00 0a 69 6e 69 74 57 72 69 74 65 72 a/io/InputStream;)V...initWriter
0440 01 00 19 28 4c 6a 61 76 61 2f 69 6f 2f 4f 75 74 70 75 74 53 74 72 65 61 6d 3b 29 56 01 00 10 69 ...(Ljava/io/OutputStream;)V...i
0460 6e 70 75 74 44 65 73 63 72 69 70 74 69 6f 6e 01 00 14 28 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 nputDescription...()Ljava/lang/S
0480 74 72 69 6e 67 3b 01 00 13 69 6e 70 75 74 46 69 6c 65 45 78 74 65 6e 73 69 6f 6e 73 01 00 15 28 tring;...inputFileExtensions...(
04a0 29 5b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 11 6f 75 74 70 75 74 44 65 73 )[Ljava/lang/String;...outputDes
04c0 63 72 69 70 74 69 6f 6e 01 00 14 6f 75 74 70 75 74 46 69 6c 65 45 78 74 65 6e 73 69 6f 6e 73 01 cription...outputFileExtensions.
04e0 00 04 72 65 61 64 01 00 1e 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 ..read...(Ljoelib2/molecule/Mole
0500 63 75 6c 65 3b 29 5a 01 00 30 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c cule;)Z..0(Ljoelib2/molecule/Mol
0520 65 63 75 6c 65 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 5a 01 00 08 72 65 61 ecule;Ljava/lang/String;)Z...rea
0540 64 61 62 6c 65 01 00 10 73 65 74 53 74 6f 72 65 4c 69 6e 65 49 6e 66 6f 01 00 04 28 5a 29 56 01 dable...setStoreLineInfo...(Z)V.
0560 00 0f 73 6b 69 70 52 65 61 64 65 72 45 6e 74 72 79 01 00 05 77 72 69 74 65 01 00 09 77 72 69 74 ..skipReaderEntry...write...writ
0580 65 61 62 6c 65 01 00 08 3c 63 6c 69 6e 69 74 3e 0c 00 9c 00 9d 0c 00 8d 00 8e 0c 00 9a 00 8e 01 eable...<clinit>................
05a0 00 10 6a 61 76 61 2f 75 74 69 6c 2f 56 65 63 74 6f 72 0c 00 91 00 92 0c 00 93 00 94 0c 01 3a 00 ..java/util/Vector............:.
05c0 9d 0c 00 96 00 97 07 01 3b 0c 01 3c 01 3d 0c 01 3e 01 3f 0c 01 40 01 41 07 01 42 0c 01 43 00 aa ........;..<.=..>.?..@.A..B..C..
05e0 01 00 17 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 0c 01 44 01 45 01 ...java/lang/StringBuilder..D.E.
0600 00 0e 2e 6c 69 6e 65 53 74 72 75 63 74 75 72 65 0c 01 46 00 aa 01 00 0c 53 4d 49 4c 45 53 7c 54 ...lineStructure..F.....SMILES|T
0620 49 54 4c 45 07 01 47 0c 01 48 01 49 01 00 18 2e 6c 69 6e 65 53 74 72 75 63 74 75 72 65 2e 64 65 ITLE..G..H.I....lineStructure.de
0640 6c 69 6d 69 74 65 72 01 00 01 7c 0c 00 8f 00 87 01 00 1e 2e 6c 69 6e 65 53 74 72 75 63 74 75 72 limiter...|.........lineStructur
0660 65 2e 69 6e 70 75 74 2e 64 65 6c 69 6d 69 74 65 72 01 00 04 20 09 0a 0d 0c 00 90 00 87 01 00 1f e.input.delimiter...............
0680 2e 6c 69 6e 65 53 74 72 75 63 74 75 72 65 2e 6f 75 74 70 75 74 2e 64 65 6c 69 6d 69 74 65 72 01 .lineStructure.output.delimiter.
06a0 00 01 20 0c 00 95 00 87 07 01 4a 0c 01 4b 00 9d 01 00 02 0a 0d 07 01 4c 0c 01 4d 01 4e 0c 00 98 ..........J..K.........L..M.N...
06c0 00 99 0c 00 9b 00 99 0c 01 4f 01 50 0c 01 51 01 52 01 00 10 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 .........O.P..Q.R...java/lang/St
06e0 72 69 6e 67 01 00 06 53 4d 49 4c 45 53 0c 01 53 01 54 01 00 05 54 49 54 4c 45 0c 00 84 00 85 07 ring...SMILES..S.T...TITLE......
0700 01 55 0c 01 56 00 a3 01 00 12 53 4d 49 4c 45 53 20 6c 69 6e 65 20 65 6e 74 72 79 20 0c 01 44 01 .U..V.....SMILES.line.entry...D.
0720 57 01 00 06 20 69 73 20 3a 20 0c 01 44 01 58 0c 01 59 01 5a 01 00 13 6a 61 76 61 2f 69 6f 2f 49 W....is.:...D.X..Y.Z...java/io/I
0740 4f 45 78 63 65 70 74 69 6f 6e 01 00 4c 59 6f 75 20 6d 75 73 74 20 64 65 66 69 6e 65 20 61 20 53 OException..LYou.must.define.a.S
0760 4d 49 4c 45 53 20 65 6e 74 72 79 20 69 6e 20 74 68 65 20 6a 6f 65 6c 69 62 32 2e 53 4d 49 4c 45 MILES.entry.in.the.joelib2.SMILE
0780 53 2e 6c 69 6e 65 53 74 72 75 63 74 75 72 65 20 70 72 6f 70 65 72 74 79 2e 0c 00 9c 01 5b 0c 01 S.lineStructure.property.....[..
07a0 48 01 5c 01 00 04 74 72 75 65 0c 01 5d 01 5e 01 00 18 6a 61 76 61 2f 69 6f 2f 4c 69 6e 65 4e 75 H.\...true..].^...java/io/LineNu
07c0 6d 62 65 72 52 65 61 64 65 72 01 00 19 6a 61 76 61 2f 69 6f 2f 49 6e 70 75 74 53 74 72 65 61 6d mberReader...java/io/InputStream
07e0 52 65 61 64 65 72 0c 00 9c 00 a6 0c 00 9c 01 5f 0c 00 a4 00 9d 01 00 14 63 66 6f 72 6d 61 74 2f Reader........._........cformat/
0800 50 72 69 6e 74 66 53 74 72 65 61 6d 0c 00 9c 00 a8 01 00 35 53 69 6d 70 6c 69 66 69 65 64 20 4d PrintfStream.......5Simplified.M
0820 6f 6c 65 63 75 6c 61 72 20 49 6e 70 75 74 20 4c 69 6e 65 20 45 6e 74 72 79 20 53 79 73 74 65 6d olecular.Input.Line.Entry.System
0840 20 28 53 4d 49 4c 45 53 29 0c 00 89 00 8a 0c 01 60 00 aa 0c 00 af 00 b1 01 00 16 6a 61 76 61 2f .(SMILES).......`..........java/
0860 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 66 66 65 72 0c 00 9c 01 61 0c 01 44 01 62 0c 01 63 01 64 lang/StringBuffer....a..D.b..c.d
0880 0c 01 44 01 65 01 00 1e 6a 6f 65 6c 69 62 32 2f 69 6f 2f 4d 6f 6c 65 63 75 6c 65 49 4f 45 78 63 ..D.e...joelib2/io/MoleculeIOExc
08a0 65 70 74 69 6f 6e 01 00 12 53 4d 49 4c 45 20 6c 69 6e 65 20 65 6e 74 72 79 20 22 01 00 0a 22 20 eption...SMILE.line.entry."...".
08c0 69 6e 20 6c 69 6e 65 20 0c 01 66 01 50 01 00 15 20 63 6f 75 6c 64 20 6e 6f 74 20 62 65 20 6c 6f in.line...f.P....could.not.be.lo
08e0 61 64 65 64 2e 01 00 21 20 4e 6f 74 20 65 6e 6f 75 67 68 20 61 72 67 75 6d 65 6e 74 73 20 61 76 aded...!.Not.enough.arguments.av
0900 61 69 6c 61 62 6c 65 20 28 01 00 02 29 2e 01 00 00 07 01 67 0c 01 68 01 69 0c 00 b5 00 a3 01 00 ailable.(...)......g..h.i.......
0920 0e 53 4d 49 4c 45 53 20 65 6e 74 72 79 20 22 01 00 24 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 .SMILES.entry."..$joelib2/molecu
0940 6c 65 2f 74 79 70 65 73 2f 42 61 73 69 63 50 61 69 72 44 61 74 61 0c 01 6a 01 5b 0c 01 6b 01 5a le/types/BasicPairData..j.[..k.Z
0960 0c 01 6c 01 6d 01 00 07 45 6e 74 72 79 20 22 01 00 19 22 20 64 6f 65 73 20 6e 6f 74 20 65 78 69 ..l.m...Entry."...".does.not.exi
0980 73 74 20 69 6e 20 6c 69 6e 65 20 01 00 01 2e 0c 00 b6 00 b1 01 00 1e 6a 6f 65 6c 69 62 32 2f 73 st.in.line.............joelib2/s
09a0 6d 69 6c 65 73 2f 53 4d 49 4c 45 53 47 65 6e 65 72 61 74 6f 72 0c 01 6e 00 9d 0c 01 6f 01 70 01 miles/SMILESGenerator..n....o.p.
09c0 00 19 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 0c 00 8b 00 8c ..joelib2/molecule/Molecule.....
09e0 0c 01 71 00 b0 0c 01 72 01 73 0c 01 74 01 75 0c 01 76 01 77 0c 01 78 01 79 0c 01 78 01 5b 0c 01 ..q....r.s..t.u..v.w..x.y..x.[..
0a00 7a 00 9d 0c 01 7b 00 aa 0c 01 7c 00 aa 01 00 09 55 6e 64 65 66 69 6e 65 64 0c 01 7d 01 7e 01 00 z....{....|.....Undefined..}.~..
0a20 12 44 65 73 63 72 69 70 74 6f 72 20 65 6e 74 72 79 20 27 01 00 0f 27 20 6e 6f 74 20 66 6f 75 6e .Descriptor.entry.'...'.not.foun
0a40 64 20 69 6e 20 0c 01 7f 01 5a 01 00 09 57 72 69 74 69 6e 67 20 30 01 00 01 30 07 01 80 0c 01 3c d.in.....Z...Writing.0...0.....<
0a60 01 81 0c 01 82 01 83 07 01 84 0c 01 46 01 85 01 00 17 6a 6f 65 6c 69 62 32 2e 69 6f 2e 74 79 70 ............F.....joelib2.io.typ
0a80 65 73 2e 53 6d 69 6c 65 73 0c 01 86 01 87 01 00 03 73 6d 69 01 00 06 73 6d 69 6c 65 73 01 00 1a es.Smiles........smi...smiles...
0aa0 6a 6f 65 6c 69 62 32 2f 61 6c 67 6f 2f 6d 6f 72 67 61 6e 2f 4d 6f 72 67 61 6e 01 00 2a 6a 6f 65 joelib2/algo/morgan/Morgan..*joe
0ac0 6c 69 62 32 2f 61 6c 67 6f 2f 6d 6f 72 67 61 6e 2f 74 79 70 65 73 2f 42 61 73 69 63 54 69 65 52 lib2/algo/morgan/types/BasicTieR
0ae0 65 73 6f 6c 76 65 72 0c 00 9c 01 88 01 00 17 6a 6f 65 6c 69 62 32 2f 69 6f 2f 74 79 70 65 73 2f esolver........joelib2/io/types/
0b00 53 6d 69 6c 65 73 01 00 10 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 01 00 19 6a 6f 65 6c Smiles...java/lang/Object...joel
0b20 69 62 32 2f 69 6f 2f 4d 6f 6c 65 63 75 6c 65 46 69 6c 65 49 4f 01 00 05 63 6c 6f 73 65 01 00 1f ib2/io/MoleculeFileIO...close...
0b40 77 73 69 2f 72 61 2f 74 6f 6f 6c 2f 42 61 73 69 63 50 72 6f 70 65 72 74 79 48 6f 6c 64 65 72 01 wsi/ra/tool/BasicPropertyHolder.
0b60 00 08 69 6e 73 74 61 6e 63 65 01 00 23 28 29 4c 77 73 69 2f 72 61 2f 74 6f 6f 6c 2f 42 61 73 69 ..instance..#()Lwsi/ra/tool/Basi
0b80 63 50 72 6f 70 65 72 74 79 48 6f 6c 64 65 72 3b 01 00 0d 67 65 74 50 72 6f 70 65 72 74 69 65 73 cPropertyHolder;...getProperties
0ba0 01 00 18 28 29 4c 6a 61 76 61 2f 75 74 69 6c 2f 50 72 6f 70 65 72 74 69 65 73 3b 01 00 08 67 65 ...()Ljava/util/Properties;...ge
0bc0 74 43 6c 61 73 73 01 00 13 28 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 43 6c 61 73 73 3b 01 00 0f 6a tClass...()Ljava/lang/Class;...j
0be0 61 76 61 2f 6c 61 6e 67 2f 43 6c 61 73 73 01 00 07 67 65 74 4e 61 6d 65 01 00 06 61 70 70 65 6e ava/lang/Class...getName...appen
0c00 64 01 00 2d 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 61 76 61 2f 6c 61 d..-(Ljava/lang/String;)Ljava/la
0c20 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 3b 01 00 08 74 6f 53 74 72 69 6e 67 01 00 14 6a ng/StringBuilder;...toString...j
0c40 61 76 61 2f 75 74 69 6c 2f 50 72 6f 70 65 72 74 69 65 73 01 00 0b 67 65 74 50 72 6f 70 65 72 74 ava/util/Properties...getPropert
0c60 79 01 00 38 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 61 76 61 2f 6c 61 6e y..8(Ljava/lang/String;Ljava/lan
0c80 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 0e 6a g/String;)Ljava/lang/String;...j
0ca0 61 76 61 2f 75 74 69 6c 2f 4c 69 73 74 01 00 05 63 6c 65 61 72 01 00 1a 6a 6f 65 6c 69 62 32 2f ava/util/List...clear...joelib2/
0cc0 75 74 69 6c 2f 48 65 6c 70 65 72 4d 65 74 68 6f 64 73 01 00 08 74 6f 6b 65 6e 69 7a 65 01 00 37 util/HelperMethods...tokenize..7
0ce0 28 4c 6a 61 76 61 2f 75 74 69 6c 2f 4c 69 73 74 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 (Ljava/util/List;Ljava/lang/Stri
0d00 6e 67 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 5a 01 00 04 73 69 7a 65 01 00 ng;Ljava/lang/String;)Z...size..
0d20 03 28 29 49 01 00 03 67 65 74 01 00 15 28 49 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 .()I...get...(I)Ljava/lang/Objec
0d40 74 3b 01 00 06 65 71 75 61 6c 73 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 t;...equals...(Ljava/lang/Object
0d60 3b 29 5a 01 00 19 6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 01 ;)Z...org/apache/log4j/Category.
0d80 00 0e 69 73 44 65 62 75 67 45 6e 61 62 6c 65 64 01 00 1c 28 49 29 4c 6a 61 76 61 2f 6c 61 6e 67 ..isDebugEnabled...(I)Ljava/lang
0da0 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 3b 01 00 2d 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 /StringBuilder;..-(Ljava/lang/Ob
0dc0 6a 65 63 74 3b 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 3b 01 ject;)Ljava/lang/StringBuilder;.
0de0 00 05 64 65 62 75 67 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 29 56 01 ..debug...(Ljava/lang/Object;)V.
0e00 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 56 01 00 38 28 4c 6a 61 76 61 ..(Ljava/lang/String;)V..8(Ljava
0e20 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 /lang/Object;Ljava/lang/String;)
0e40 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 10 65 71 75 61 6c 73 49 67 6e 6f 72 Ljava/lang/String;...equalsIgnor
0e60 65 43 61 73 65 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 5a 01 00 13 eCase...(Ljava/lang/String;)Z...
0e80 28 4c 6a 61 76 61 2f 69 6f 2f 52 65 61 64 65 72 3b 29 56 01 00 08 72 65 61 64 4c 69 6e 65 01 00 (Ljava/io/Reader;)V...readLine..
0ea0 04 28 49 29 56 01 00 2c 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 29 4c 6a 61 76 .(I)V..,(Ljava/lang/Object;)Ljav
0ec0 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 66 66 65 72 3b 01 00 06 63 68 61 72 41 74 01 00 04 a/lang/StringBuffer;...charAt...
0ee0 28 49 29 43 01 00 1b 28 43 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 66 66 65 (I)C...(C)Ljava/lang/StringBuffe
0f00 72 3b 01 00 0d 67 65 74 4c 69 6e 65 4e 75 6d 62 65 72 01 00 1b 6a 6f 65 6c 69 62 32 2f 73 6d 69 r;...getLineNumber...joelib2/smi
0f20 6c 65 73 2f 53 4d 49 4c 45 53 50 61 72 73 65 72 01 00 0f 73 6d 69 6c 65 73 32 6d 6f 6c 65 63 75 les/SMILESParser...smiles2molecu
0f40 6c 65 01 00 42 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 le..B(Ljoelib2/molecule/Molecule
0f60 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 ;Ljava/lang/String;Ljava/lang/St
0f80 72 69 6e 67 3b 29 5a 01 00 06 73 65 74 4b 65 79 01 00 0b 73 65 74 4b 65 79 56 61 6c 75 65 01 00 ring;)Z...setKey...setKeyValue..
0fa0 07 61 64 64 44 61 74 61 01 00 24 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 74 79 .addData..$(Ljoelib2/molecule/ty
0fc0 70 65 73 2f 50 61 69 72 44 61 74 61 3b 29 56 01 00 04 69 6e 69 74 01 00 05 63 6c 6f 6e 65 01 00 pes/PairData;)V...init...clone..
0fe0 15 28 5a 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 01 00 09 63 61 6c 63 75 6c 61 .(Z)Ljava/lang/Object;...calcula
1000 74 65 01 00 08 72 65 6e 75 6d 62 65 72 01 00 38 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 te...renumber..8(Ljoelib2/molecu
1020 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 29 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d le/Molecule;)Ljoelib2/molecule/M
1040 6f 6c 65 63 75 6c 65 3b 01 00 1a 63 6f 72 72 65 63 74 41 72 6f 6d 61 74 69 63 41 6d 69 6e 65 43 olecule;...correctAromaticAmineC
1060 68 61 72 67 65 01 00 1e 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 harge...(Ljoelib2/molecule/Molec
1080 75 6c 65 3b 29 56 01 00 0f 63 72 65 61 74 65 53 6d 69 53 74 72 69 6e 67 01 00 36 28 4c 6a 6f 65 ule;)V...createSmiString..6(Ljoe
10a0 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 4c 6a 61 76 61 2f 6c 61 6e lib2/molecule/Molecule;Ljava/lan
10c0 67 2f 53 74 72 69 6e 67 42 75 66 66 65 72 3b 29 56 01 00 05 70 72 69 6e 74 01 00 04 28 43 29 56 g/StringBuffer;)V...print...(C)V
10e0 01 00 07 70 72 69 6e 74 6c 6e 01 00 08 67 65 74 54 69 74 6c 65 01 00 04 74 72 69 6d 01 00 07 67 ...println...getTitle...trim...g
1100 65 74 44 61 74 61 01 00 35 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 6f etData..5(Ljava/lang/String;)Ljo
1120 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 74 79 70 65 73 2f 50 61 69 72 44 61 74 61 3b 01 00 elib2/molecule/types/PairData;..
1140 04 77 61 72 6e 01 00 1c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 65 48 6f .warn...joelib2/io/BasicIOTypeHo
1160 6c 64 65 72 01 00 20 28 29 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 65 lder...()Ljoelib2/io/BasicIOType
1180 48 6f 6c 64 65 72 3b 01 00 09 67 65 74 49 4f 54 79 70 65 01 00 2c 28 4c 6a 61 76 61 2f 6c 61 6e Holder;...getIOType..,(Ljava/lan
11a0 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 g/String;)Ljoelib2/io/BasicIOTyp
11c0 65 3b 01 00 1f 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 74 79 70 65 73 2f 50 61 69 72 e;...joelib2/molecule/types/Pair
11e0 44 61 74 61 01 00 27 28 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 49 4f 54 79 70 65 3b 29 4c 6a 61 76 Data..'(Ljoelib2/io/IOType;)Ljav
1200 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 0b 67 65 74 49 6e 73 74 61 6e 63 65 01 00 2f 28 a/lang/String;...getInstance../(
1220 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6f 72 67 2f 61 70 61 63 68 65 2f 6c Ljava/lang/String;)Lorg/apache/l
1240 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 3b 01 00 24 28 4c 6a 6f 65 6c 69 62 32 2f 61 6c 67 6f 2f og4j/Category;..$(Ljoelib2/algo/
1260 6d 6f 72 67 61 6e 2f 54 69 65 52 65 73 6f 6c 76 65 72 3b 29 56 00 21 00 81 00 82 00 01 00 83 00 morgan/TieResolver;)V.!.........
1280 0e 00 0a 00 84 00 85 00 00 00 1a 00 86 00 87 00 01 00 88 00 00 00 02 00 3f 00 1a 00 89 00 8a 00 ........................?.......
12a0 00 00 1a 00 8b 00 8c 00 00 00 02 00 8d 00 8e 00 00 00 02 00 8f 00 87 00 00 00 02 00 90 00 87 00 ................................
12c0 00 00 02 00 91 00 92 00 00 00 02 00 93 00 94 00 00 00 02 00 95 00 87 00 00 00 02 00 96 00 97 00 ................................
12e0 00 00 02 00 98 00 99 00 00 00 02 00 9a 00 8e 00 00 00 02 00 9b 00 99 00 00 00 15 00 01 00 9c 00 ................................
1300 9d 00 01 00 9e 00 00 00 26 00 03 00 01 00 00 00 1a 2a b7 00 01 2a 03 b5 00 02 2a 03 b5 00 03 2a ........&........*...*....*....*
1320 bb 00 04 59 b7 00 05 b5 00 06 b1 00 00 00 00 00 01 00 9f 00 9d 00 02 00 9e 00 00 00 14 00 01 00 ...Y............................
1340 01 00 00 00 08 2a b4 00 07 b6 00 08 b1 00 00 00 00 00 a0 00 00 00 04 00 01 00 31 00 01 00 a1 00 .....*....................1.....
1360 9d 00 02 00 9e 00 00 00 14 00 01 00 01 00 00 00 08 2a b4 00 09 b6 00 0a b1 00 00 00 00 00 a0 00 .................*..............
1380 00 00 04 00 01 00 31 00 01 00 a2 00 a3 00 01 00 9e 00 00 00 11 00 01 00 01 00 00 00 05 2a b4 00 ......1......................*..
13a0 03 ac 00 00 00 00 00 01 00 a4 00 9d 00 02 00 9e 00 00 01 83 00 04 00 05 00 00 01 77 b8 00 0b b6 ...........................w....
13c0 00 0c 4c 2a b6 00 0d b6 00 0e 4d 2b bb 00 0f 59 b7 00 10 2c b6 00 11 12 12 b6 00 11 b6 00 13 12 ..L*......M+...Y...,............
13e0 14 b6 00 15 4e 2a 2b bb 00 0f 59 b7 00 10 2c b6 00 11 12 16 b6 00 11 b6 00 13 12 17 b6 00 15 b5 ....N*+...Y...,.................
1400 00 18 2a 2b bb 00 0f 59 b7 00 10 2c b6 00 11 12 19 b6 00 11 b6 00 13 12 1a b6 00 15 b5 00 1b 2a ..*+...Y...,...................*
1420 2b bb 00 0f 59 b7 00 10 2c b6 00 11 12 1c b6 00 11 b6 00 13 12 1d b6 00 15 b5 00 1e 2a b4 00 06 +...Y...,...................*...
1440 b9 00 1f 01 00 2a b4 00 06 2d bb 00 0f 59 b7 00 10 2a b4 00 18 b6 00 11 12 20 b6 00 11 b6 00 13 .....*...-...Y...*..............
1460 b8 00 21 57 2a 02 b5 00 22 2a 02 b5 00 23 03 36 04 15 04 2a b4 00 06 b9 00 24 01 00 a2 00 7a 2a ..!W*..."*...#.6...*.....$....z*
1480 b4 00 06 15 04 b9 00 25 02 00 c0 00 26 12 27 b6 00 28 99 00 0c 2a 15 04 b5 00 22 a7 00 1f 2a b4 .......%....&.'..(...*...."...*.
14a0 00 06 15 04 b9 00 25 02 00 c0 00 26 12 29 b6 00 28 99 00 09 2a 15 04 b5 00 23 b2 00 2a b6 00 2b ......%....&.)..(...*....#..*..+
14c0 99 00 30 b2 00 2a bb 00 0f 59 b7 00 10 12 2c b6 00 11 15 04 b6 00 2d 12 2e b6 00 11 2a b4 00 06 ..0..*...Y....,.......-.....*...
14e0 15 04 b9 00 25 02 00 b6 00 2f b6 00 13 b6 00 30 84 04 01 a7 ff 7e 2a b4 00 22 02 a0 00 0d bb 00 ....%..../.....0.....~*.."......
1500 31 59 12 32 b7 00 33 bf 01 3a 04 b8 00 0b 2a 12 34 b6 00 35 3a 04 19 04 c6 00 15 19 04 12 36 b6 1Y.2..3..:....*.4..5:.........6.
1520 00 37 99 00 0b 2a 04 b5 00 02 a7 00 08 2a 03 b5 00 02 b1 00 00 00 00 00 a0 00 00 00 04 00 01 00 .7...*.......*..................
1540 31 00 01 00 a5 00 a6 00 02 00 9e 00 00 00 24 00 06 00 02 00 00 00 18 2a bb 00 38 59 bb 00 39 59 1.............$........*..8Y..9Y
1560 2b b7 00 3a b7 00 3b b5 00 07 2a b6 00 3c b1 00 00 00 00 00 a0 00 00 00 04 00 01 00 31 00 01 00 +..:..;...*..<..............1...
1580 a7 00 a8 00 02 00 9e 00 00 00 1d 00 04 00 02 00 00 00 11 2a bb 00 3d 59 2b b7 00 3e b5 00 09 2a ...................*..=Y+..>...*
15a0 b6 00 3c b1 00 00 00 00 00 a0 00 00 00 04 00 01 00 31 00 01 00 a9 00 aa 00 01 00 9e 00 00 00 0f ..<..............1..............
15c0 00 01 00 01 00 00 00 03 12 3f b0 00 00 00 00 00 01 00 ab 00 ac 00 01 00 9e 00 00 00 10 00 01 00 .........?......................
15e0 01 00 00 00 04 b2 00 40 b0 00 00 00 00 00 01 00 ad 00 aa 00 01 00 9e 00 00 00 0f 00 01 00 01 00 .......@........................
1600 00 00 03 12 3f b0 00 00 00 00 00 01 00 ae 00 ac 00 01 00 9e 00 00 00 10 00 01 00 01 00 00 00 04 ....?...........................
1620 b2 00 40 b0 00 00 00 00 00 01 00 af 00 aa 00 02 00 9e 00 00 00 14 00 01 00 01 00 00 00 08 2a b4 ..@...........................*.
1640 00 07 b6 00 41 b0 00 00 00 00 00 a0 00 00 00 04 00 01 00 31 00 01 00 af 00 b0 00 02 00 9e 00 00 ....A..............1............
1660 00 13 00 03 00 02 00 00 00 07 2a 2b 01 b6 00 42 ac 00 00 00 00 00 a0 00 00 00 06 00 02 00 31 00 ..........*+...B..............1.
1680 49 00 21 00 af 00 b1 00 02 00 9e 00 00 01 fa 00 05 00 08 00 00 01 ee 2a b4 00 07 b6 00 41 59 4e I.!....................*.....AYN
16a0 c7 00 05 03 ac bb 00 04 59 b7 00 05 3a 04 19 04 2d 2a b4 00 1b b8 00 21 57 19 04 b6 00 43 2a b4 ........Y...:...-*.....!W....C*.
16c0 00 06 b9 00 24 01 00 a2 00 9c bb 00 44 59 2a b4 00 06 b9 00 24 01 00 10 0a 68 b7 00 45 3a 05 03 ....$.......DY*.....$....h..E:..
16e0 36 06 15 06 2a b4 00 06 b9 00 24 01 00 a2 00 38 19 05 2a b4 00 06 15 06 b9 00 25 02 00 b6 00 46 6...*.....$....8..*.......%....F
1700 57 15 06 2a b4 00 06 b9 00 24 01 00 04 64 a2 00 11 19 05 2a b4 00 1b 03 b6 00 47 b6 00 48 57 84 W..*.....$...d.....*......G..HW.
1720 06 01 a7 ff c0 bb 00 49 59 bb 00 0f 59 b7 00 10 12 4a b6 00 11 2d b6 00 11 12 4b b6 00 11 2a b4 .......IY...Y....J...-....K...*.
1740 00 07 b6 00 4c b6 00 2d 12 4d b6 00 11 12 4e b6 00 11 19 05 b6 00 2f 12 4f b6 00 11 b6 00 13 b7 ....L..-.M....N......./.O.......
1760 00 50 bf 2a b4 00 23 02 a0 00 14 2c c7 00 0a 12 51 3a 05 a7 00 17 2c 3a 05 a7 00 11 19 04 2a b4 .P.*..#....,....Q:....,:......*.
1780 00 23 b6 00 52 c0 00 26 3a 05 2b 19 04 2a b4 00 22 b6 00 52 c0 00 26 19 05 b8 00 53 9a 00 42 2a .#..R..&:.+..*.."..R..&....S..B*
17a0 b6 00 54 57 bb 00 49 59 bb 00 0f 59 b7 00 10 12 55 b6 00 11 19 04 2a b4 00 22 b6 00 52 c0 00 26 ..TW..IY...Y....U.....*.."..R..&
17c0 b6 00 11 12 4b b6 00 11 2a b4 00 07 b6 00 4c b6 00 2d 12 4d b6 00 11 b6 00 13 b7 00 50 bf 03 36 ....K...*.....L..-.M........P..6
17e0 06 15 06 2a b4 00 06 b9 00 24 01 00 a2 00 97 15 06 2a b4 00 22 9f 00 88 15 06 2a b4 00 23 9f 00 ...*.....$.......*..".....*..#..
1800 7f 15 06 19 04 b6 00 43 a2 00 39 bb 00 56 59 b7 00 57 3a 07 19 07 2a b4 00 06 15 06 b9 00 25 02 .......C..9..VY..W:...*.......%.
1820 00 c0 00 26 b6 00 58 19 07 19 04 15 06 b6 00 52 c0 00 26 b6 00 59 2b 19 07 b9 00 5a 02 00 a7 00 ...&..X........R..&..Y+....Z....
1840 3f bb 00 31 59 bb 00 0f 59 b7 00 10 12 5b b6 00 11 2a b4 00 06 15 06 b9 00 25 02 00 c0 00 26 b6 ?..1Y...Y....[...*.......%....&.
1860 00 11 12 5c b6 00 11 2a b4 00 07 b6 00 4c b6 00 2d 12 5d b6 00 11 b6 00 13 b7 00 33 bf 84 06 01 ...\...*.....L..-.]........3....
1880 a7 ff 61 04 ac 00 00 00 00 00 a0 00 00 00 06 00 02 00 31 00 49 00 01 00 b2 00 a3 00 01 00 9e 00 ..a...............1.I...........
18a0 00 00 0e 00 01 00 01 00 00 00 02 04 ac 00 00 00 00 00 01 00 b3 00 b4 00 01 00 9e 00 00 00 12 00 ................................
18c0 02 00 02 00 00 00 06 2a 1b b5 00 03 b1 00 00 00 00 00 01 00 b5 00 a3 00 02 00 9e 00 00 00 0e 00 .......*........................
18e0 01 00 01 00 00 00 02 04 ac 00 00 00 00 00 a0 00 00 00 04 00 01 00 31 00 01 00 b6 00 b0 00 02 00 ......................1.........
1900 9e 00 00 00 13 00 03 00 02 00 00 00 07 2a 2b 01 b6 00 5e ac 00 00 00 00 00 a0 00 00 00 04 00 01 .............*+...^.............
1920 00 31 00 01 00 b6 00 b1 00 02 00 9e 00 00 01 ae 00 04 00 07 00 00 01 a2 bb 00 5f 59 b7 00 60 4e .1........................_Y..`N
1940 2d b6 00 61 bb 00 44 59 11 03 e8 b7 00 45 3a 04 2a b4 00 02 99 00 33 2b 03 b9 00 62 02 00 c0 00 -..a..DY.....E:.*.....3+...b....
1960 63 3a 05 b2 00 64 19 05 b6 00 65 57 b2 00 64 19 05 b6 00 66 3a 06 2d 19 06 b6 00 67 2d 19 06 19 c:...d....eW..d....f:.-....g-...
1980 04 b6 00 68 a7 00 0f 2d 2b b6 00 67 2d 2b 19 04 b6 00 68 2a b4 00 03 99 00 4f 2a b4 00 09 10 23 ...h...-+..g-+....h*.....O*....#
19a0 b6 00 69 03 36 05 15 05 2a b4 00 06 b9 00 24 01 00 a2 00 2e 15 05 99 00 0e 2a b4 00 09 2a b4 00 ..i.6...*.....$..........*...*..
19c0 18 b6 00 6a 2a b4 00 09 2a b4 00 06 15 05 b9 00 25 02 00 c0 00 26 b6 00 6a 84 05 01 a7 ff ca 2a ...j*...*.......%....&..j......*
19e0 b4 00 09 b6 00 6b 03 36 05 15 05 2a b4 00 06 b9 00 24 01 00 a2 00 dd 15 05 99 00 0e 2a b4 00 09 .....k.6...*.....$..........*...
1a00 2a b4 00 1e b6 00 6a 15 05 2a b4 00 22 a0 00 12 2a b4 00 09 19 04 b6 00 6c b6 00 6a a7 00 af 15 *.....j..*.."...*.......l..j....
1a20 05 2a b4 00 23 a0 00 30 2c 3a 06 19 06 c7 00 0b 2b b9 00 6d 01 00 3a 06 19 06 b6 00 6e 12 51 b6 .*..#..0,:......+..m..:.....n.Q.
1a40 00 28 99 00 07 12 6f 3a 06 2a b4 00 09 19 06 b6 00 6a a7 00 79 2b 2a b4 00 06 15 05 b9 00 25 02 .(....o:.*.......j..y+*.......%.
1a60 00 c0 00 26 b9 00 70 02 00 3a 06 19 06 c7 00 48 b2 00 2a bb 00 0f 59 b7 00 10 12 71 b6 00 11 2a ...&..p..:.....H..*...Y....q...*
1a80 b4 00 06 15 05 b9 00 25 02 00 b6 00 2f 12 72 b6 00 11 2b b9 00 6d 01 00 b6 00 11 b6 00 13 b6 00 .......%..../.r...+..m..........
1aa0 73 b2 00 2a 12 74 b6 00 73 2a b4 00 09 12 75 b6 00 6a a7 00 19 2a b4 00 09 19 06 b8 00 76 12 27 s..*.t..s*....u..j...*.......v.'
1ac0 b6 00 77 b9 00 78 02 00 b6 00 6a 84 05 01 a7 ff 1b 2a b4 00 09 b6 00 6b 04 ac 00 00 00 00 00 a0 ..w..x....j......*.....k........
1ae0 00 00 00 04 00 01 00 31 00 01 00 b7 00 a3 00 01 00 9e 00 00 00 0e 00 01 00 01 00 00 00 02 04 ac .......1........................
1b00 00 00 00 00 00 08 00 b8 00 9d 00 01 00 9e 00 00 00 37 00 04 00 00 00 00 00 2b 12 79 b8 00 7a b3 .................7.......+.y..z.
1b20 00 2a 05 bd 00 26 59 03 12 7b 53 59 04 12 7c 53 b3 00 40 bb 00 7d 59 bb 00 7e 59 b7 00 7f b7 00 .*...&Y..{SY..|S..@..}Y..~Y.....
1b40 80 b3 00 64 b1 00 00 00 00 00 00 ...d.......