blob: c4d7421e527ea74fcc5243f7b72f5c522d31fbe9 (plain)

ofs	hex dump	ascii
0000	ca fe ba be 00 00 00 31 00 73 0a 00 22 00 2f 0a 00 21 00 30 0b 00 31 00 32 0b 00 31 00 33 07 00	.......1.s.."./..!.0..1.2..1.3..
0020	34 07 00 35 0a 00 06 00 2f 0a 00 06 00 36 08 00 37 0a 00 06 00 38 0a 00 06 00 39 0b 00 3a 00 3b	4..5..../....6..7....8....9..:.;
0040	0a 00 05 00 3c 08 00 3d 0a 00 3e 00 3f 0b 00 40 00 41 0b 00 40 00 42 0b 00 31 00 43 08 00 44 0b	....<..=..>.?..@.A..@.B..1.C..D.
0060	00 31 00 45 0b 00 46 00 3b 0a 00 21 00 47 07 00 48 0a 00 17 00 2f 0a 00 17 00 49 0a 00 17 00 4a	.1.E..F.;..!.G..H..../....I....J
0080	07 00 4b 0a 00 1b 00 4c 0a 00 17 00 4d 08 00 4e 0a 00 1b 00 39 0a 00 4f 00 50 07 00 51 07 00 52	..K....L....M..N....9..O.P..Q..R
00a0	01 00 06 3c 69 6e 69 74 3e 01 00 03 28 29 56 01 00 04 43 6f 64 65 01 00 14 63 72 65 61 74 65 41	...<init>...()V...Code...createA
00c0	74 6f 6d 41 6e 64 42 6f 6e 64 49 44 73 01 00 4e 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75	tomAndBondIDs..N(Ljoelib2/molecu
00e0	6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a	le/Molecule;Ljava/lang/String;Lj
0100	61 76 61 2f 75 74 69 6c 2f 4d 61 70 3b 4c 6a 61 76 61 2f 75 74 69 6c 2f 4d 61 70 3b 29 56 01 00	ava/util/Map;Ljava/util/Map;)V..
0120	09 53 69 67 6e 61 74 75 72 65 01 00 b2 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f	.Signature...(Ljoelib2/molecule/
0140	4d 6f 6c 65 63 75 6c 65 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 61 76 61	Molecule;Ljava/lang/String;Ljava
0160	2f 75 74 69 6c 2f 4d 61 70 3c 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 6f 65	/util/Map<Ljava/lang/String;Ljoe
0180	6c 69 62 32 2f 75 74 69 6c 2f 74 79 70 65 73 2f 53 74 72 69 6e 67 49 6e 74 3b 3e 3b 4c 6a 61 76	lib2/util/types/StringInt;>;Ljav
01a0	61 2f 75 74 69 6c 2f 4d 61 70 3c 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 6f	a/util/Map<Ljava/lang/String;Ljo
01c0	65 6c 69 62 32 2f 75 74 69 6c 2f 74 79 70 65 73 2f 53 74 72 69 6e 67 49 6e 74 3b 3e 3b 29 56 01	elib2/util/types/StringInt;>;)V.
01e0	00 50 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 4c 6a	.P(Ljoelib2/molecule/Molecule;Lj
0200	61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 61 76 61 2f 75 74 69 6c 2f 4d 61 70 3b 4c	ava/lang/String;Ljava/util/Map;L
0220	6a 61 76 61 2f 75 74 69 6c 2f 4d 61 70 3b 49 49 29 56 01 00 b4 28 4c 6a 6f 65 6c 69 62 32 2f 6d	java/util/Map;II)V...(Ljoelib2/m
0240	6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69	olecule/Molecule;Ljava/lang/Stri
0260	6e 67 3b 4c 6a 61 76 61 2f 75 74 69 6c 2f 4d 61 70 3c 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72	ng;Ljava/util/Map<Ljava/lang/Str
0280	69 6e 67 3b 4c 6a 6f 65 6c 69 62 32 2f 75 74 69 6c 2f 74 79 70 65 73 2f 53 74 72 69 6e 67 49 6e	ing;Ljoelib2/util/types/StringIn
02a0	74 3b 3e 3b 4c 6a 61 76 61 2f 75 74 69 6c 2f 4d 61 70 3c 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74	t;>;Ljava/util/Map<Ljava/lang/St
02c0	72 69 6e 67 3b 4c 6a 6f 65 6c 69 62 32 2f 75 74 69 6c 2f 74 79 70 65 73 2f 53 74 72 69 6e 67 49	ring;Ljoelib2/util/types/StringI
02e0	6e 74 3b 3e 3b 49 49 29 56 01 00 10 63 72 65 61 74 65 4d 6f 6c 65 63 75 6c 65 49 44 01 00 2f 28	nt;>;II)V...createMoleculeID../(
0300	4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 29 4c 6a 61 76	Ljoelib2/molecule/Molecule;)Ljav
0320	61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 30 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63	a/lang/String;..0(Ljoelib2/molec
0340	75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 5a 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67	ule/Molecule;Z)Ljava/lang/String
0360	3b 0c 00 23 00 24 0c 00 26 00 2a 07 00 53 0c 00 54 00 55 0c 00 56 00 57 01 00 21 6a 6f 65 6c 69	;..#.$..&.*..S..T.U..V.W..!joeli
0380	62 32 2f 75 74 69 6c 2f 74 79 70 65 73 2f 42 61 73 69 63 53 74 72 69 6e 67 49 6e 74 01 00 17 6a	b2/util/types/BasicStringInt...j
03a0	61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 0c 00 58 00 59 01 00 02 3a 61	ava/lang/StringBuilder..X.Y...:a
03c0	0c 00 58 00 5a 0c 00 5b 00 5c 07 00 5d 0c 00 5e 00 55 0c 00 23 00 5f 01 00 01 3a 07 00 60 0c 00	..X.Z..[.\..]..^.U..#._...:..`..
03e0	5b 00 61 07 00 62 0c 00 63 00 64 0c 00 65 00 66 0c 00 67 00 55 01 00 02 3a 62 0c 00 68 00 69 07	[.a..b..c.d..e.f..g.U...:b..h.i.
0400	00 6a 0c 00 2c 00 2e 01 00 1e 6a 6f 65 6c 69 62 32 2f 73 6d 69 6c 65 73 2f 53 4d 49 4c 45 53 47	.j..,.....joelib2/smiles/SMILESG
0420	65 6e 65 72 61 74 6f 72 0c 00 6b 00 24 0c 00 6c 00 6d 01 00 16 6a 61 76 61 2f 6c 61 6e 67 2f 53	enerator..k.$..l.m...java/lang/S
0440	74 72 69 6e 67 42 75 66 66 65 72 0c 00 23 00 6e 0c 00 6f 00 70 01 00 01 6d 07 00 71 0c 00 72 00	tringBuffer..#.n..o.p...m..q..r.
0460	55 01 00 21 6a 6f 65 6c 69 62 32 2f 69 6f 2f 74 79 70 65 73 2f 63 6d 6c 2f 43 4d 4c 49 44 43 72	U..!joelib2/io/types/cml/CMLIDCr
0480	65 61 74 6f 72 01 00 10 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 01 00 19 6a 6f 65 6c 69	eator...java/lang/Object...joeli
04a0	62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 01 00 0c 67 65 74 41 74 6f 6d 73 53	b2/molecule/Molecule...getAtomsS
04c0	69 7a 65 01 00 03 28 29 49 01 00 07 67 65 74 41 74 6f 6d 01 00 1a 28 49 29 4c 6a 6f 65 6c 69 62	ize...()I...getAtom...(I)Ljoelib
04e0	32 2f 6d 6f 6c 65 63 75 6c 65 2f 41 74 6f 6d 3b 01 00 06 61 70 70 65 6e 64 01 00 2d 28 4c 6a 61	2/molecule/Atom;...append..-(Lja
0500	76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e	va/lang/String;)Ljava/lang/Strin
0520	67 42 75 69 6c 64 65 72 3b 01 00 1c 28 49 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67	gBuilder;...(I)Ljava/lang/String
0540	42 75 69 6c 64 65 72 3b 01 00 08 74 6f 53 74 72 69 6e 67 01 00 14 28 29 4c 6a 61 76 61 2f 6c 61	Builder;...toString...()Ljava/la
0560	6e 67 2f 53 74 72 69 6e 67 3b 01 00 15 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 41 74	ng/String;...joelib2/molecule/At
0580	6f 6d 01 00 08 67 65 74 49 6e 64 65 78 01 00 16 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69	om...getIndex...(Ljava/lang/Stri
05a0	6e 67 3b 49 29 56 01 00 11 6a 61 76 61 2f 6c 61 6e 67 2f 49 6e 74 65 67 65 72 01 00 15 28 49 29	ng;I)V...java/lang/Integer...(I)
05c0	4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 0d 6a 61 76 61 2f 75 74 69 6c 2f 4d	Ljava/lang/String;...java/util/M
05e0	61 70 01 00 03 70 75 74 01 00 38 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 4c 6a	ap...put..8(Ljava/lang/Object;Lj
0600	61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65	ava/lang/Object;)Ljava/lang/Obje
0620	63 74 3b 01 00 03 67 65 74 01 00 26 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 29	ct;...get..&(Ljava/lang/Object;)
0640	4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 01 00 0c 67 65 74 42 6f 6e 64 73 53 69 7a	Ljava/lang/Object;...getBondsSiz
0660	65 01 00 07 67 65 74 42 6f 6e 64 01 00 1a 28 49 29 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75	e...getBond...(I)Ljoelib2/molecu
0680	6c 65 2f 42 6f 6e 64 3b 01 00 15 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 42 6f 6e 64	le/Bond;...joelib2/molecule/Bond
06a0	01 00 04 69 6e 69 74 01 00 1a 63 6f 72 72 65 63 74 41 72 6f 6d 61 74 69 63 41 6d 69 6e 65 43 68	...init...correctAromaticAmineCh
06c0	61 72 67 65 01 00 1e 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75	arge...(Ljoelib2/molecule/Molecu
06e0	6c 65 3b 29 56 01 00 04 28 49 29 56 01 00 0f 63 72 65 61 74 65 53 6d 69 53 74 72 69 6e 67 01 00	le;)V...(I)V...createSmiString..
0700	36 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 4c 6a 61	6(Ljoelib2/molecule/Molecule;Lja
0720	76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 66 66 65 72 3b 29 56 01 00 10 6a 61 76 61 2f 6c	va/lang/StringBuffer;)V...java/l
0740	61 6e 67 2f 53 74 72 69 6e 67 01 00 08 68 61 73 68 43 6f 64 65 00 21 00 21 00 22 00 00 00 00 00	ang/String...hashCode.!.!.".....
0760	05 00 01 00 23 00 24 00 01 00 25 00 00 00 11 00 01 00 01 00 00 00 05 2a b7 00 01 b1 00 00 00 00	....#.$...%............*........
0780	00 09 00 26 00 27 00 02 00 25 00 00 00 16 00 06 00 04 00 00 00 0a 2a 2b 2c 2d 03 03 b8 00 02 b1	...&.'...%............*+,-......
07a0	00 00 00 00 00 28 00 00 00 02 00 29 00 09 00 26 00 2a 00 02 00 25 00 00 01 06 00 05 00 0a 00 00	.....(.....)...&.*...%..........
07c0	00 fa 03 36 08 15 08 2a b9 00 03 01 00 a2 00 78 2a 15 08 04 60 b9 00 04 02 00 3a 07 bb 00 05 59	...6...*.......x*...`.....:....Y
07e0	bb 00 06 59 b7 00 07 2b b6 00 08 12 09 b6 00 08 15 08 04 60 15 04 60 b6 00 0a b6 00 0b 19 07 b9	...Y...+...........`..`.........
0800	00 0c 01 00 b7 00 0d 3a 06 2c bb 00 06 59 b7 00 07 2b b6 00 08 12 0e b6 00 08 19 07 b9 00 0c 01	.......:.,...Y...+..............
0820	00 b8 00 0f b6 00 08 b6 00 0b 19 06 b9 00 10 03 00 57 2c 19 07 b9 00 11 02 00 c0 00 05 3a 06 84	.................W,..........:..
0840	08 01 a7 ff 83 03 36 09 15 09 2a b9 00 12 01 00 a2 00 6b bb 00 05 59 bb 00 06 59 b7 00 07 2b b6	......6...*.......k...Y...Y...+.
0860	00 08 12 13 b6 00 08 15 09 04 60 15 05 60 b6 00 0a b6 00 0b 2a 15 09 b9 00 14 02 00 b9 00 15 01	..........`..`......*...........
0880	00 b7 00 0d 3a 08 2d bb 00 06 59 b7 00 07 2b b6 00 08 12 0e b6 00 08 2a 15 09 b9 00 14 02 00 b9	....:.-...Y...+........*........
08a0	00 15 01 00 b8 00 0f b6 00 08 b6 00 0b 19 08 b9 00 10 03 00 57 84 09 01 a7 ff 90 b1 00 00 00 00	....................W...........
08c0	00 28 00 00 00 02 00 2b 00 09 00 2c 00 2d 00 01 00 25 00 00 00 12 00 02 00 01 00 00 00 06 2a 04	.(.....+...,.-...%............*.
08e0	b8 00 16 b0 00 00 00 00 00 09 00 2c 00 2e 00 01 00 25 00 00 00 66 00 03 00 04 00 00 00 5a bb 00	...........,.....%...f.......Z..
0900	17 59 b7 00 18 4d 2c b6 00 19 2c 2a b6 00 1a bb 00 1b 59 11 03 e8 b7 00 1c 4e 2c 2a 2d b6 00 1d	.Y...M,...,*......Y......N,*-...
0920	1b 99 00 20 bb 00 06 59 b7 00 07 12 1e b6 00 08 2d b6 00 1f b6 00 20 b8 00 0f b6 00 08 b6 00 0b	.......Y........-...............
0940	b0 bb 00 06 59 b7 00 07 12 1e b6 00 08 2d b6 00 1f b6 00 08 b6 00 0b b0 00 00 00 00 00 00	....Y........-................