blob: 7c4965389d8795bb0accda18c1eaac2f3926dd65 (plain)

ofs	hex dump	ascii
0000	ca fe ba be 00 00 00 31 00 a2 0a 00 36 00 48 07 00 49 0a 00 02 00 48 09 00 35 00 4a 0a 00 35 00	.......1....6.H..I....H..5.J..5.
0020	4b 09 00 35 00 4c 09 00 35 00 4d 08 00 4e 0a 00 4f 00 50 0b 00 0e 00 51 08 00 52 0a 00 4f 00 53	K..5.L..5.M..N..O.P....Q..R..O.S
0040	0b 00 0e 00 54 07 00 55 0b 00 56 00 57 0b 00 56 00 58 07 00 59 07 00 5a 0a 00 12 00 48 08 00 5b	....T..U..V.W..V.X..Y..Z....H..[
0060	0a 00 12 00 5c 0b 00 0e 00 5d 0a 00 12 00 5e 0b 00 11 00 5f 0b 00 11 00 60 07 00 61 0b 00 0e 00	....\....]....^...._....`..a....
0080	62 0b 00 0e 00 63 0a 00 02 00 4b 0a 00 64 00 65 0a 00 35 00 66 07 00 67 0a 00 20 00 68 09 00 35	b....c....K..d.e..5.f..g....h..5
00a0	00 69 0a 00 20 00 48 07 00 6a 08 00 6b 0a 00 6c 00 6d 0a 00 20 00 58 07 00 6e 0a 00 28 00 48 0b	.i....H..j..k..l.m....X..n..(.H.
00c0	00 11 00 6f 08 00 70 0b 00 11 00 71 08 00 72 08 00 73 0b 00 56 00 74 0a 00 20 00 57 08 00 75 08	...o..p....q..r..s..V.t....W..u.
00e0	00 76 08 00 77 0a 00 4f 00 78 07 00 79 07 00 7a 01 00 06 6c 6f 67 67 65 72 01 00 1b 4c 6f 72 67	.v..w..O.x..y..z...logger...Lorg
0100	2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 3b 01 00 10 63 6f 6e 74 69 67	/apache/log4j/Category;...contig
0120	46 72 61 67 6d 65 6e 74 65 72 01 00 34 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 66	Fragmenter..4Ljoelib2/molecule/f
0140	72 61 67 6d 65 6e 74 61 74 69 6f 6e 2f 43 6f 6e 74 69 67 75 6f 75 73 46 72 61 67 6d 65 6e 74 73	ragmentation/ContiguousFragments
0160	3b 01 00 0b 64 65 73 63 72 69 70 74 69 6f 6e 01 00 10 4c 6a 61 76 61 2f 75 74 69 6c 2f 4c 69 73	;...description...Ljava/util/Lis
0180	74 3b 01 00 06 73 6d 61 72 74 73 01 00 06 3c 69 6e 69 74 3e 01 00 03 28 29 56 01 00 04 43 6f 64	t;...smarts...<init>...()V...Cod
01a0	65 01 00 10 67 65 74 46 72 61 67 6d 65 6e 74 61 74 69 6f 6e 01 00 3e 28 4c 6a 6f 65 6c 69 62 32	e...getFragmentation..>(Ljoelib2
01c0	2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 29 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c	/molecule/Molecule;)Ljoelib2/mol
01e0	65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 56 65 63 74 6f 72 3b 01 00 4f 28 4c 6a 6f 65 6c 69 62	ecule/MoleculeVector;..O(Ljoelib
0200	32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 5a 4c 6a 61 76 61 2f 75 74 69 6c 2f	2/molecule/Molecule;ZLjava/util/
0220	4c 69 73 74 3b 29 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65	List;)Ljoelib2/molecule/Molecule
0240	56 65 63 74 6f 72 3b 01 00 0e 73 65 74 50 61 74 74 79 53 4d 41 52 54 53 01 00 15 28 4c 6a 61 76	Vector;...setPattySMARTS...(Ljav
0260	61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 5a 01 00 13 28 4c 6a 61 76 61 2f 75 74 69 6c 2f 4c	a/lang/String;)Z...(Ljava/util/L
0280	69 73 74 3b 29 5a 01 00 08 3c 63 6c 69 6e 69 74 3e 0c 00 3e 00 3f 01 00 32 6a 6f 65 6c 69 62 32	ist;)Z...<clinit>..>.?..2joelib2
02a0	2f 6d 6f 6c 65 63 75 6c 65 2f 66 72 61 67 6d 65 6e 74 61 74 69 6f 6e 2f 43 6f 6e 74 69 67 75 6f	/molecule/fragmentation/Contiguo
02c0	75 73 46 72 61 67 6d 65 6e 74 73 0c 00 39 00 3a 0c 00 41 00 43 0c 00 3d 00 3c 0c 00 37 00 38 01	usFragments..9.:..A.C..=.<..7.8.
02e0	00 1a 4e 6f 20 53 4d 41 52 54 53 20 70 61 74 74 65 72 6e 20 64 65 66 69 6e 65 64 2e 07 00 7b 0c	..No.SMARTS.pattern.defined...{.
0300	00 7c 00 7d 0c 00 7e 00 7f 01 00 38 4d 6f 6c 65 63 75 6c 65 20 6e 6f 74 20 64 65 66 69 6e 65 64	.|.}..~....8Molecule.not.defined
0320	20 6f 72 20 65 6d 70 74 79 2e 20 49 74 20 63 61 6e 20 6e 6f 74 20 62 65 20 66 72 61 67 6d 65 6e	.or.empty..It.can.not.be.fragmen
0340	74 65 64 2e 0c 00 80 00 7d 0c 00 81 00 82 01 00 19 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c	ted.....}........joelib2/molecul
0360	65 2f 4d 6f 6c 65 63 75 6c 65 07 00 83 0c 00 84 00 85 0c 00 86 00 87 01 00 23 6a 6f 65 6c 69 62	e/Molecule...............#joelib
0380	32 2f 73 6d 61 72 74 73 2f 53 4d 41 52 54 53 50 61 74 74 65 72 6e 4d 61 74 63 68 65 72 01 00 17	2/smarts/SMARTSPatternMatcher...
03a0	6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 01 00 25 4e 6f 20 6d 6f 6c	java/lang/StringBuilder..%No.mol
03c0	65 63 75 6c 61 72 20 73 74 72 75 63 74 75 72 65 20 61 76 61 69 6c 61 62 6c 65 20 66 6f 72 20 0c	ecular.structure.available.for..
03e0	00 88 00 89 0c 00 8a 00 8b 0c 00 8c 00 8b 0c 00 8d 00 8e 0c 00 8f 00 90 01 00 02 5b 49 0c 00 91	...........................[I...
0400	00 92 0c 00 93 00 94 07 00 95 0c 00 96 00 97 0c 00 44 00 46 01 00 10 6a 61 76 61 2f 75 74 69 6c	.................D.F...java/util
0420	2f 56 65 63 74 6f 72 0c 00 3e 00 98 0c 00 3b 00 3c 01 00 10 6a 61 76 61 2f 6c 61 6e 67 2f 53 74	/Vector..>....;.<...java/lang/St
0440	72 69 6e 67 01 00 04 20 09 0d 0a 07 00 99 0c 00 9a 00 9b 01 00 28 6a 6f 65 6c 69 62 32 2f 73 6d	ring.................(joelib2/sm
0460	61 72 74 73 2f 42 61 73 69 63 53 4d 41 52 54 53 50 61 74 74 65 72 6e 4d 61 74 63 68 65 72 0c 00	arts/BasicSMARTSPatternMatcher..
0480	9c 00 45 01 00 18 49 6e 76 61 6c 69 64 20 53 4d 41 52 54 53 20 70 61 74 74 65 72 6e 3a 20 0c 00	..E...Invalid.SMARTS.pattern:...
04a0	9d 00 85 01 00 0f 53 4d 41 52 54 53 20 70 61 74 74 65 72 6e 20 01 00 35 20 6d 75 73 74 20 68 61	......SMARTS.pattern...5.must.ha
04c0	76 65 20 61 74 20 6c 65 61 73 74 20 74 77 6f 20 61 74 6f 6d 73 20 74 6f 20 61 6c 6c 6f 77 20 66	ve.at.least.two.atoms.to.allow.f
04e0	72 61 67 6d 65 6e 74 61 74 69 6f 6e 2e 0c 00 9e 00 9f 01 00 23 4e 6f 20 64 65 73 63 72 69 70 74	ragmentation........#No.descript
0500	69 6f 6e 20 66 6f 72 20 53 4d 41 52 54 53 20 70 61 74 74 65 72 6e 3a 20 01 00 00 01 00 32 6a 6f	ion.for.SMARTS.pattern:......2jo
0520	65 6c 69 62 32 2e 6d 6f 6c 65 63 75 6c 65 2e 66 72 61 67 6d 65 6e 74 61 74 69 6f 6e 2e 53 4d 41	elib2.molecule.fragmentation.SMA
0540	52 54 53 46 72 61 67 6d 65 6e 74 61 74 69 6f 6e 0c 00 a0 00 a1 01 00 32 6a 6f 65 6c 69 62 32 2f	RTSFragmentation.......2joelib2/
0560	6d 6f 6c 65 63 75 6c 65 2f 66 72 61 67 6d 65 6e 74 61 74 69 6f 6e 2f 53 4d 41 52 54 53 46 72 61	molecule/fragmentation/SMARTSFra
0580	67 6d 65 6e 74 61 74 69 6f 6e 01 00 10 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 01 00 19	gmentation...java/lang/Object...
05a0	6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 01 00 05 65 72 72 6f	org/apache/log4j/Category...erro
05c0	72 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 29 56 01 00 07 69 73 45 6d	r...(Ljava/lang/Object;)V...isEm
05e0	70 74 79 01 00 03 28 29 5a 01 00 04 77 61 72 6e 01 00 05 63 6c 6f 6e 65 01 00 14 28 29 4c 6a 61	pty...()Z...warn...clone...()Lja
0600	76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 01 00 0e 6a 61 76 61 2f 75 74 69 6c 2f 4c 69 73 74	va/lang/Object;...java/util/List
0620	01 00 04 73 69 7a 65 01 00 03 28 29 49 01 00 03 67 65 74 01 00 15 28 49 29 4c 6a 61 76 61 2f 6c	...size...()I...get...(I)Ljava/l
0640	61 6e 67 2f 4f 62 6a 65 63 74 3b 01 00 06 61 70 70 65 6e 64 01 00 2d 28 4c 6a 61 76 61 2f 6c 61	ang/Object;...append..-(Ljava/la
0660	6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c	ng/String;)Ljava/lang/StringBuil
0680	64 65 72 3b 01 00 08 67 65 74 54 69 74 6c 65 01 00 14 28 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53	der;...getTitle...()Ljava/lang/S
06a0	74 72 69 6e 67 3b 01 00 08 74 6f 53 74 72 69 6e 67 01 00 05 6d 61 74 63 68 01 00 1e 28 4c 6a 6f	tring;...toString...match...(Ljo
06c0	65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 29 5a 01 00 0a 67 65 74	elib2/molecule/Molecule;)Z...get
06e0	4d 61 74 63 68 65 73 01 00 12 28 29 4c 6a 61 76 61 2f 75 74 69 6c 2f 4c 69 73 74 3b 01 00 07 67	Matches...()Ljava/util/List;...g
0700	65 74 42 6f 6e 64 01 00 1b 28 49 49 29 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 42	etBond...(II)Ljoelib2/molecule/B
0720	6f 6e 64 3b 01 00 0a 64 65 6c 65 74 65 42 6f 6e 64 01 00 1a 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f	ond;...deleteBond...(Ljoelib2/mo
0740	6c 65 63 75 6c 65 2f 42 6f 6e 64 3b 29 5a 01 00 1f 77 73 69 2f 72 61 2f 74 6f 6f 6c 2f 42 61 73	lecule/Bond;)Z...wsi/ra/tool/Bas
0760	69 63 52 65 73 6f 75 72 63 65 4c 6f 61 64 65 72 01 00 09 72 65 61 64 4c 69 6e 65 73 01 00 24 28	icResourceLoader...readLines..$(
0780	4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 61 76 61 2f 75 74 69 6c 2f 4c 69	Ljava/lang/String;)Ljava/util/Li
07a0	73 74 3b 01 00 04 28 49 29 56 01 00 1a 6a 6f 65 6c 69 62 32 2f 75 74 69 6c 2f 48 65 6c 70 65 72	st;...(I)V...joelib2/util/Helper
07c0	4d 65 74 68 6f 64 73 01 00 08 74 6f 6b 65 6e 69 7a 65 01 00 37 28 4c 6a 61 76 61 2f 75 74 69 6c	Methods...tokenize..7(Ljava/util
07e0	2f 4c 69 73 74 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 61 76 61 2f 6c 61	/List;Ljava/lang/String;Ljava/la
0800	6e 67 2f 53 74 72 69 6e 67 3b 29 5a 01 00 04 69 6e 69 74 01 00 11 67 65 74 51 75 65 72 79 41 74	ng/String;)Z...init...getQueryAt
0820	6f 6d 73 53 69 7a 65 01 00 03 61 64 64 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65	omsSize...add...(Ljava/lang/Obje
0840	63 74 3b 29 5a 01 00 0b 67 65 74 49 6e 73 74 61 6e 63 65 01 00 2f 28 4c 6a 61 76 61 2f 6c 61 6e	ct;)Z...getInstance../(Ljava/lan
0860	67 2f 53 74 72 69 6e 67 3b 29 4c 6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65	g/String;)Lorg/apache/log4j/Cate
0880	67 6f 72 79 3b 00 21 00 35 00 36 00 00 00 04 00 0a 00 37 00 38 00 00 00 02 00 39 00 3a 00 00 00	gory;.!.5.6.......7.8.....9.:...
08a0	02 00 3b 00 3c 00 00 00 02 00 3d 00 3c 00 00 00 06 00 01 00 3e 00 3f 00 01 00 40 00 00 00 1c 00	..;.<.....=.<.......>.?...@.....
08c0	03 00 01 00 00 00 10 2a b7 00 01 2a bb 00 02 59 b7 00 03 b5 00 04 b1 00 00 00 00 00 01 00 41 00	.......*...*...Y..............A.
08e0	42 00 01 00 40 00 00 00 14 00 04 00 02 00 00 00 08 2a 2b 03 01 b6 00 05 b0 00 00 00 00 00 01 00	B...@............*+.............
0900	41 00 43 00 01 00 40 00 00 00 f3 00 05 00 0a 00 00 00 e7 2a b4 00 06 c7 00 0d b2 00 07 12 08 b6	A.C...@............*............
0920	00 09 01 b0 2b c6 00 0c 2b b9 00 0a 01 00 99 00 0d b2 00 07 12 0b b6 00 0c 01 b0 2b b9 00 0d 01	....+...+..................+....
0940	00 c0 00 0e 3a 04 03 36 08 15 08 2a b4 00 06 b9 00 0f 01 00 a2 00 9a 2a b4 00 06 15 08 b9 00 10	....:..6...*...........*........
0960	02 00 c0 00 11 3a 05 19 04 c6 00 0d 19 04 b9 00 0a 01 00 99 00 25 b2 00 07 bb 00 12 59 b7 00 13	.....:...............%......Y...
0980	12 14 b6 00 15 19 04 b9 00 16 01 00 b6 00 15 b6 00 17 b6 00 09 a7 00 53 19 05 19 04 b9 00 18 02	.......................S........
09a0	00 57 19 05 b9 00 19 01 00 3a 06 03 36 09 15 09 19 06 b9 00 0f 01 00 a2 00 31 19 06 15 09 b9 00	.W.......:..6............1......
09c0	10 02 00 c0 00 1a c0 00 1a 3a 07 19 04 19 04 19 07 03 2e 19 07 04 2e b9 00 1b 03 00 b9 00 1c 02	.........:......................
09e0	00 57 84 09 01 a7 ff c9 84 08 01 a7 ff 5e 2a b4 00 04 19 04 1c 2d b6 00 1d b0 00 00 00 00 00 01	.W...........^*......-..........
0a00	00 44 00 45 00 01 00 40 00 00 00 17 00 02 00 03 00 00 00 0b 2b b8 00 1e 4d 2a 2c b6 00 1f ac 00	.D.E...@............+...M*,.....
0a20	00 00 00 00 01 00 44 00 46 00 01 00 40 00 00 01 20 00 04 00 08 00 00 01 14 04 3d 2a bb 00 20 59	......D.F...@.............=*...Y
0a40	2b b9 00 0f 01 00 b7 00 21 b5 00 06 2a bb 00 20 59 2b b9 00 0f 01 00 b7 00 21 b5 00 22 bb 00 20	+.......!...*...Y+.......!.."...
0a60	59 b7 00 23 3a 05 03 36 06 15 06 2b b9 00 0f 01 00 a2 00 da 2b 15 06 b9 00 10 02 00 c0 00 24 4e	Y..#:..6...+........+.........$N
0a80	19 05 2d 12 25 b8 00 26 57 19 05 03 b6 00 27 c0 00 24 3a 04 bb 00 28 59 b7 00 29 3a 07 19 07 19	..-.%..&W.....'..$:...(Y..):....
0aa0	04 b9 00 2a 02 00 9a 00 22 b2 00 07 bb 00 12 59 b7 00 13 12 2b b6 00 15 19 04 b6 00 15 b6 00 17	...*...."......Y....+...........
0ac0	b6 00 09 03 3d a7 00 80 19 07 b9 00 2c 01 00 05 a2 00 27 b2 00 07 bb 00 12 59 b7 00 13 12 2d b6	....=.......,.....'......Y....-.
0ae0	00 15 19 04 b6 00 15 12 2e b6 00 15 b6 00 17 b6 00 09 03 3d a7 00 51 2a b4 00 06 19 07 b9 00 2f	...................=..Q*......./
0b00	02 00 57 19 05 b6 00 30 05 a2 00 2c b2 00 07 bb 00 12 59 b7 00 13 12 31 b6 00 15 19 04 b6 00 15	..W....0...,......Y....1........
0b20	b6 00 17 b6 00 0c 2a b4 00 22 12 32 b9 00 2f 02 00 57 a7 00 13 2a b4 00 22 19 05 04 b6 00 27 b9	......*..".2../..W...*..".....'.
0b40	00 2f 02 00 57 84 06 01 a7 ff 21 1c ac 00 00 00 00 00 08 00 47 00 3f 00 01 00 40 00 00 00 15 00	./..W.....!.........G.?...@.....
0b60	01 00 00 00 00 00 09 12 33 b8 00 34 b3 00 07 b1 00 00 00 00 00 00	........3..4..........