summaryrefslogtreecommitdiff
path: root/java/joelib2/util/database/BasicJOELibDatabase.class
blob: adbb382eca35108bc4e03ade433578e33365cf7d (plain)
ofshex dumpascii
0000 ca fe ba be 00 00 00 31 01 4b 0a 00 6a 00 8e 08 00 8f 09 00 13 00 90 07 00 91 08 00 6f 08 00 92 .......1.K..j...............o...
0020 0a 00 04 00 93 09 00 13 00 94 08 00 6d 09 00 13 00 95 08 00 70 09 00 13 00 96 09 00 13 00 97 09 ............m.......p...........
0040 00 13 00 98 09 00 13 00 99 09 00 13 00 9a 09 00 13 00 9b 09 00 13 00 9c 07 00 9d 0a 00 13 00 8e ................................
0060 09 00 13 00 9e 07 00 9f 0a 00 16 00 8e 08 00 a0 0a 00 16 00 a1 0a 00 16 00 a2 0a 00 a3 00 a4 08 ................................
0080 00 a5 0a 00 a6 00 a7 0a 00 a6 00 a8 0a 00 13 00 a9 0a 00 13 00 aa 07 00 ab 0a 00 21 00 ac 0a 00 ...........................!....
00a0 a3 00 ad 0a 00 ae 00 af 0a 00 ae 00 b0 0a 00 ae 00 b1 0a 00 ae 00 b2 08 00 b3 08 00 b4 0a 00 04 ................................
00c0 00 b5 08 00 b6 0a 00 04 00 b7 08 00 b8 08 00 b9 08 00 ba 08 00 bb 0b 00 bc 00 bd 0a 00 a3 00 be ................................
00e0 08 00 bf 0a 00 a3 00 c0 0a 00 21 00 c1 08 00 c2 0a 00 a3 00 c3 0a 00 c4 00 c5 0a 00 13 00 b2 0a ..........!.....................
0100 00 13 00 c6 0a 00 ae 00 c7 09 00 13 00 c8 0b 00 c9 00 ca 09 00 13 00 cb 09 00 13 00 cc 0a 00 cd ................................
0120 00 a2 08 00 ce 08 00 cf 08 00 d0 0b 00 d1 00 d2 0a 00 13 00 d3 0a 00 d4 00 d5 0a 00 13 00 d6 0b ................................
0140 00 d7 00 d8 0b 00 d7 00 d9 0b 00 c9 00 da 08 00 db 08 00 dc 08 00 dd 08 00 de 0a 00 16 00 df 08 ................................
0160 00 e0 0b 00 e1 00 e2 0b 00 e1 00 e3 0b 00 e1 00 e4 07 00 e5 08 00 e6 08 00 e7 08 00 e8 08 00 e9 ................................
0180 0a 00 13 00 ea 0a 00 13 00 eb 07 00 ec 0a 00 5b 00 ed 0a 00 ee 00 ef 0b 00 f0 00 f1 0a 00 cd 00 ...............[................
01a0 f2 08 00 f3 08 00 f4 07 00 f5 0a 00 62 00 f6 0b 00 f0 00 f7 0b 00 c9 00 f8 08 00 f9 08 00 fa 0a ............b...................
01c0 00 fb 00 fc 0a 00 a3 00 fd 07 00 fe 01 00 06 6c 6f 67 67 65 72 01 00 1b 4c 6f 72 67 2f 61 70 61 ...............logger...Lorg/apa
01e0 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 3b 01 00 03 53 44 46 01 00 18 4c 6a 6f 65 che/log4j/Category;...SDF...Ljoe
0200 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 65 3b 01 00 03 43 4d 4c 01 00 06 53 4d 49 lib2/io/BasicIOType;...CML...SMI
0220 4c 45 53 01 00 10 64 65 66 61 75 6c 74 54 61 62 6c 65 4e 61 6d 65 01 00 12 4c 6a 61 76 61 2f 6c LES...defaultTableName...Ljava/l
0240 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 0b 70 72 6f 70 65 72 74 79 43 4d 4c 01 00 26 4c 6a 6f 65 ang/String;...propertyCML..&Ljoe
0260 6c 69 62 32 2f 75 74 69 6c 2f 74 79 70 65 73 2f 42 61 73 69 63 53 74 72 69 6e 67 53 74 72 69 6e lib2/util/types/BasicStringStrin
0280 67 3b 01 00 0b 70 72 6f 70 65 72 74 79 53 44 46 01 00 0e 70 72 6f 70 65 72 74 79 53 4d 49 4c 45 g;...propertySDF...propertySMILE
02a0 53 01 00 09 64 65 66 61 75 6c 74 49 44 01 00 01 49 01 00 0f 74 61 62 6c 65 50 72 6f 70 65 72 74 S...defaultID...I...tablePropert
02c0 69 65 73 01 00 27 5b 4c 6a 6f 65 6c 69 62 32 2f 75 74 69 6c 2f 74 79 70 65 73 2f 42 61 73 69 63 ies..'[Ljoelib2/util/types/Basic
02e0 53 74 72 69 6e 67 53 74 72 69 6e 67 3b 01 00 06 3c 69 6e 69 74 3e 01 00 03 28 29 56 01 00 04 43 StringString;...<init>...()V...C
0300 6f 64 65 01 00 04 6d 61 69 6e 01 00 16 28 5b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 ode...main...([Ljava/lang/String
0320 3b 29 56 01 00 0b 63 72 65 61 74 65 54 61 62 6c 65 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f ;)V...createTable...(Ljava/lang/
0340 53 74 72 69 6e 67 3b 29 56 01 00 0a 45 78 63 65 70 74 69 6f 6e 73 01 00 0b 65 78 69 73 74 73 54 String;)V...Exceptions...existsT
0360 61 62 6c 65 01 00 03 28 29 5a 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b able...()Z...(Ljava/lang/String;
0380 29 5a 01 00 12 67 65 74 54 61 62 6c 65 50 72 6f 70 65 72 74 69 65 73 01 00 29 28 29 5b 4c 6a 6f )Z...getTableProperties..)()[Ljo
03a0 65 6c 69 62 32 2f 75 74 69 6c 2f 74 79 70 65 73 2f 42 61 73 69 63 53 74 72 69 6e 67 53 74 72 69 elib2/util/types/BasicStringStri
03c0 6e 67 3b 01 00 0e 69 6e 73 65 72 74 4d 6f 6c 65 63 75 6c 65 01 00 31 28 4c 6a 61 76 61 2f 6c 61 ng;...insertMolecule..1(Ljava/la
03e0 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 ng/String;Ljoelib2/molecule/Mole
0400 63 75 6c 65 3b 49 29 56 01 00 33 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a cule;I)V..3(Ljava/lang/String;Lj
0420 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 49 5a 5a 29 56 01 00 oelib2/molecule/Molecule;IZZ)V..
0440 13 73 74 6f 72 65 4d 6f 6c 73 49 6e 44 61 74 61 62 61 73 65 01 00 2d 28 4c 6a 61 76 61 2f 6c 61 .storeMolsInDatabase..-(Ljava/la
0460 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 ng/String;Ljoelib2/io/BasicIOTyp
0480 65 3b 29 56 01 00 08 3c 63 6c 69 6e 69 74 3e 0c 00 7b 00 7c 01 00 09 4d 4f 4c 45 43 55 4c 45 53 e;)V...<clinit>..{.|...MOLECULES
04a0 0c 00 71 00 72 01 00 24 6a 6f 65 6c 69 62 32 2f 75 74 69 6c 2f 74 79 70 65 73 2f 42 61 73 69 63 ..q.r..$joelib2/util/types/Basic
04c0 53 74 72 69 6e 67 53 74 72 69 6e 67 01 00 08 4c 4f 4e 47 54 45 58 54 0c 00 7b 00 ff 0c 00 73 00 StringString...LONGTEXT..{....s.
04e0 74 0c 00 75 00 74 0c 00 76 00 74 0c 00 77 00 78 0c 01 00 00 74 0c 01 01 00 74 0c 01 02 00 74 0c t..u.t..v.t..w.x....t....t....t.
0500 01 03 00 74 0c 00 79 00 7a 01 00 29 6a 6f 65 6c 69 62 32 2f 75 74 69 6c 2f 64 61 74 61 62 61 73 ...t..y.z..)joelib2/util/databas
0520 65 2f 42 61 73 69 63 4a 4f 45 4c 69 62 44 61 74 61 62 61 73 65 0c 00 6b 00 6c 01 00 17 6a 61 76 e/BasicJOELibDatabase..k.l...jav
0540 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 01 00 0a 4f 70 65 6e 20 66 69 6c 65 a/lang/StringBuilder...Open.file
0560 3a 0c 01 04 01 05 0c 01 06 01 07 07 01 08 0c 01 09 01 0a 01 00 10 77 69 74 68 20 69 6e 70 75 74 :.....................with.input
0580 20 74 79 70 65 3a 07 01 0b 0c 01 0c 01 0d 0c 01 0e 01 0f 0c 00 8b 00 8c 0c 00 80 00 81 01 00 13 .type:..........................
05a0 6a 61 76 61 2f 6c 61 6e 67 2f 45 78 63 65 70 74 69 6f 6e 0c 01 10 01 07 0c 01 11 01 0a 07 01 12 java/lang/Exception.............
05c0 0c 01 0c 01 13 0c 01 14 00 84 0c 01 15 01 16 0c 00 83 00 85 01 00 0d 43 52 45 41 54 45 20 54 41 .......................CREATE.TA
05e0 42 4c 45 20 01 00 02 20 28 0c 01 17 01 07 01 00 01 20 0c 01 18 01 07 01 00 0c 20 4e 4f 54 20 4e BLE.....(..................NOT.N
0600 55 4c 4c 20 2c 20 01 00 02 2c 20 01 00 25 43 4f 4e 53 54 52 41 49 4e 54 20 50 55 52 50 4f 53 45 ULL.,....,...%CONSTRAINT.PURPOSE
0620 44 4d 4f 4c 53 20 50 52 49 4d 41 52 59 20 4b 45 59 20 28 01 00 03 29 20 29 07 01 19 0c 01 1a 00 DMOLS.PRIMARY.KEY.(...).).......
0640 85 0c 01 1b 00 84 01 00 0f 43 72 65 61 74 65 64 20 74 61 62 6c 65 3a 20 0c 01 1c 01 0a 0c 01 1d .........Created.table:.........
0660 00 7c 01 00 2b 44 61 74 61 62 61 73 65 20 63 6f 6e 6e 65 63 74 69 6f 6e 20 63 61 6e 20 6e 6f 74 .|..+Database.connection.can.not
0680 20 62 65 20 65 73 74 61 62 6c 69 73 68 65 64 2e 0c 01 1e 01 0a 07 01 1f 0c 01 20 01 21 0c 00 88 .be.established.............!...
06a0 00 8a 0c 01 22 01 23 0c 00 6d 00 6e 07 01 24 0c 01 06 01 25 0c 00 6f 00 6e 0c 00 70 00 6e 07 01 ....".#..m.n..$....%..o.n..p.n..
06c0 26 01 00 19 20 74 79 70 65 20 63 61 6e 20 6e 6f 74 20 62 65 20 63 72 65 61 74 65 64 2e 01 00 0c &....type.can.not.be.created....
06e0 49 4e 53 45 52 54 20 49 4e 54 4f 20 01 00 47 20 28 4e 41 4d 45 2c 20 49 44 2c 20 48 41 53 48 2c INSERT.INTO...G.(NAME,.ID,.HASH,
0700 20 53 48 41 53 48 2c 20 53 44 46 2c 20 43 4d 4c 2c 20 53 4d 49 4c 45 53 29 20 56 41 4c 55 45 53 .SHASH,.SDF,.CML,.SMILES).VALUES
0720 20 28 3f 2c 20 3f 2c 20 3f 2c 20 3f 2c 20 3f 2c 20 3f 2c 20 3f 29 07 01 27 0c 01 28 01 29 0c 01 .(?,.?,.?,.?,.?,.?,.?)..'..(.)..
0740 2a 01 2b 07 01 2c 0c 01 06 01 2d 0c 01 2e 01 2f 07 01 30 0c 01 31 00 84 0c 01 32 01 33 0c 01 34 *.+..,....-..../..0..1....2.3..4
0760 01 07 01 00 0b 20 65 78 69 73 74 73 20 61 73 20 01 00 12 2c 20 69 74 20 69 73 20 6e 6f 74 20 61 ......exists.as....,.it.is.not.a
0780 64 64 65 64 2e 01 00 1b 43 68 65 63 6b 20 69 66 20 65 71 75 61 6c 20 6d 6f 6c 65 63 75 6c 65 73 dded....Check.if.equal.molecules
07a0 20 21 20 01 00 12 2e 20 42 6f 74 68 20 68 61 76 65 20 48 41 53 48 3d 27 0c 01 04 01 35 01 00 01 .!......Both.have.HASH='....5...
07c0 27 07 01 36 0c 01 37 01 38 0c 01 39 01 3a 0c 01 3b 01 3c 01 00 15 6a 61 76 61 2f 73 71 6c 2f 53 '..6..7.8..9.:..;.<...java/sql/S
07e0 51 4c 45 78 63 65 70 74 69 6f 6e 01 00 27 45 6e 74 72 79 20 65 78 69 73 74 73 20 61 6c 72 65 61 QLException..'Entry.exists.alrea
0800 64 79 20 69 6e 20 64 61 74 61 62 61 73 65 3a 20 4e 61 6d 65 3a 01 00 04 20 49 64 3a 01 00 0a 4d dy.in.database:.Name:....Id:...M
0820 6f 6c 65 63 75 6c 65 20 27 01 00 18 27 20 77 61 73 20 61 64 64 65 64 20 74 6f 20 64 61 74 61 62 olecule.'...'.was.added.to.datab
0840 61 73 65 2e 0c 00 83 00 84 0c 00 80 00 7c 01 00 17 6a 61 76 61 2f 69 6f 2f 46 69 6c 65 49 6e 70 ase..........|...java/io/FileInp
0860 75 74 53 74 72 65 61 6d 0c 00 7b 00 81 07 01 3d 0c 01 3e 01 3f 07 01 40 0c 01 41 00 84 0c 01 42 utStream..{....=..>.?..@..A....B
0880 01 07 01 00 11 20 69 73 20 6e 6f 74 20 72 65 61 64 61 62 6c 65 2e 01 00 20 59 6f 75 27 72 65 20 ......is.not.readable....You're.
08a0 69 6e 76 69 74 65 64 20 74 6f 20 77 72 69 74 65 20 6f 6e 65 20 21 3b 2d 29 01 00 27 6a 6f 65 6c invited.to.write.one.!;-)..'joel
08c0 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 42 61 73 69 63 43 6f 6e 66 6f 72 6d 65 72 4d 6f 6c 65 63 ib2/molecule/BasicConformerMolec
08e0 75 6c 65 0c 00 7b 01 43 0c 01 44 01 45 0c 01 46 00 84 01 00 13 4e 6f 20 6d 6f 6c 65 63 75 6c 65 ule..{.C..D.E..F.....No.molecule
0900 20 6c 6f 61 64 65 64 2e 01 00 0b 74 72 79 20 74 6f 20 61 64 64 20 07 01 47 0c 01 48 01 07 0c 01 .loaded....try.to.add...G..H....
0920 49 01 4a 01 00 26 6a 6f 65 6c 69 62 32 2f 75 74 69 6c 2f 64 61 74 61 62 61 73 65 2f 41 62 73 74 I.J..&joelib2/util/database/Abst
0940 72 61 63 74 44 61 74 61 62 61 73 65 01 00 27 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e ractDatabase..'(Ljava/lang/Strin
0960 67 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 56 01 00 0c 70 72 6f 70 65 72 74 g;Ljava/lang/String;)V...propert
0980 79 4e 41 4d 45 01 00 0a 70 72 6f 70 65 72 74 79 49 44 01 00 0c 70 72 6f 70 65 72 74 79 48 41 53 yNAME...propertyID...propertyHAS
09a0 48 01 00 0d 70 72 6f 70 65 72 74 79 53 48 41 53 48 01 00 06 61 70 70 65 6e 64 01 00 2d 28 4c 6a H...propertySHASH...append..-(Lj
09c0 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 ava/lang/String;)Ljava/lang/Stri
09e0 6e 67 42 75 69 6c 64 65 72 3b 01 00 08 74 6f 53 74 72 69 6e 67 01 00 14 28 29 4c 6a 61 76 61 2f ngBuilder;...toString...()Ljava/
0a00 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 19 6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f lang/String;...org/apache/log4j/
0a20 43 61 74 65 67 6f 72 79 01 00 04 69 6e 66 6f 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 Category...info...(Ljava/lang/Ob
0a40 6a 65 63 74 3b 29 56 01 00 1c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 65 ject;)V...joelib2/io/BasicIOType
0a60 48 6f 6c 64 65 72 01 00 08 69 6e 73 74 61 6e 63 65 01 00 20 28 29 4c 6a 6f 65 6c 69 62 32 2f 69 Holder...instance...()Ljoelib2/i
0a80 6f 2f 42 61 73 69 63 49 4f 54 79 70 65 48 6f 6c 64 65 72 3b 01 00 09 67 65 74 49 4f 54 79 70 65 o/BasicIOTypeHolder;...getIOType
0aa0 01 00 2c 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 6f 65 6c 69 62 32 2f ..,(Ljava/lang/String;)Ljoelib2/
0ac0 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 65 3b 01 00 0a 67 65 74 4d 65 73 73 61 67 65 01 00 04 77 io/BasicIOType;...getMessage...w
0ae0 61 72 6e 01 00 22 77 73 69 2f 72 61 2f 64 61 74 61 62 61 73 65 2f 44 61 74 61 62 61 73 65 43 6f arn.."wsi/ra/database/DatabaseCo
0b00 6e 6e 65 63 74 69 6f 6e 01 00 26 28 29 4c 77 73 69 2f 72 61 2f 64 61 74 61 62 61 73 65 2f 44 61 nnection..&()Lwsi/ra/database/Da
0b20 74 61 62 61 73 65 43 6f 6e 6e 65 63 74 69 6f 6e 3b 01 00 15 69 73 43 6f 6e 6e 65 63 74 69 6f 6e tabaseConnection;...isConnection
0b40 41 76 61 69 6c 61 62 6c 65 01 00 0c 67 65 74 53 74 61 74 65 6d 65 6e 74 01 00 16 28 29 4c 6a 61 Available...getStatement...()Lja
0b60 76 61 2f 73 71 6c 2f 53 74 61 74 65 6d 65 6e 74 3b 01 00 0f 67 65 74 53 74 72 69 6e 67 56 61 6c va/sql/Statement;...getStringVal
0b80 75 65 31 01 00 0f 67 65 74 53 74 72 69 6e 67 56 61 6c 75 65 32 01 00 12 6a 61 76 61 2f 73 71 6c ue1...getStringValue2...java/sql
0ba0 2f 53 74 61 74 65 6d 65 6e 74 01 00 07 65 78 65 63 75 74 65 01 00 0e 69 73 44 65 62 75 67 45 6e /Statement...execute...isDebugEn
0bc0 61 62 6c 65 64 01 00 05 64 65 62 75 67 01 00 0f 70 72 69 6e 74 53 74 61 63 6b 54 72 61 63 65 01 abled...debug...printStackTrace.
0be0 00 05 65 72 72 6f 72 01 00 10 6a 61 76 61 2f 6c 61 6e 67 2f 53 79 73 74 65 6d 01 00 04 65 78 69 ..error...java/lang/System...exi
0c00 74 01 00 04 28 49 29 56 01 00 0d 67 65 74 43 6f 6e 6e 65 63 74 69 6f 6e 01 00 17 28 29 4c 6a 61 t...(I)V...getConnection...()Lja
0c20 76 61 2f 73 71 6c 2f 43 6f 6e 6e 65 63 74 69 6f 6e 3b 01 00 19 6a 6f 65 6c 69 62 32 2f 6d 6f 6c va/sql/Connection;...joelib2/mol
0c40 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 01 00 27 28 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 49 4f ecule/Molecule..'(Ljoelib2/io/IO
0c60 54 79 70 65 3b 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 16 6a 6f 65 6c 69 Type;)Ljava/lang/String;...joeli
0c80 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 65 01 00 13 6a 61 76 61 2f 73 71 6c 2f 43 6f 6e b2/io/BasicIOType...java/sql/Con
0ca0 6e 65 63 74 69 6f 6e 01 00 10 70 72 65 70 61 72 65 53 74 61 74 65 6d 65 6e 74 01 00 30 28 4c 6a nection...prepareStatement..0(Lj
0cc0 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 61 76 61 2f 73 71 6c 2f 50 72 65 70 61 ava/lang/String;)Ljava/sql/Prepa
0ce0 72 65 64 53 74 61 74 65 6d 65 6e 74 3b 01 00 0f 67 65 74 4d 6f 6c 65 63 75 6c 65 48 41 53 48 01 redStatement;...getMoleculeHASH.
0d00 00 1f 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 29 5b ..(Ljoelib2/molecule/Molecule;)[
0d20 49 01 00 11 6a 61 76 61 2f 6c 61 6e 67 2f 49 6e 74 65 67 65 72 01 00 15 28 49 29 4c 6a 61 76 61 I...java/lang/Integer...(I)Ljava
0d40 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 08 73 65 6c 65 63 74 42 79 01 00 5e 28 4c 6a 61 76 /lang/String;...selectBy..^(Ljav
0d60 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b a/lang/String;Ljava/lang/String;
0d80 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 Ljava/lang/String;Ljava/lang/Str
0da0 69 6e 67 3b 29 4c 6a 61 76 61 2f 73 71 6c 2f 52 65 73 75 6c 74 53 65 74 3b 01 00 12 6a 61 76 61 ing;)Ljava/sql/ResultSet;...java
0dc0 2f 73 71 6c 2f 52 65 73 75 6c 74 53 65 74 01 00 04 6e 65 78 74 01 00 09 67 65 74 53 74 72 69 6e /sql/ResultSet...next...getStrin
0de0 67 01 00 26 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 61 76 61 2f 6c 61 g..&(Ljava/lang/String;)Ljava/la
0e00 6e 67 2f 53 74 72 69 6e 67 3b 01 00 08 67 65 74 54 69 74 6c 65 01 00 1c 28 49 29 4c 6a 61 76 61 ng/String;...getTitle...(I)Ljava
0e20 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 3b 01 00 1a 6a 61 76 61 2f 73 71 6c 2f /lang/StringBuilder;...java/sql/
0e40 50 72 65 70 61 72 65 64 53 74 61 74 65 6d 65 6e 74 01 00 09 73 65 74 53 74 72 69 6e 67 01 00 16 PreparedStatement...setString...
0e60 28 49 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 56 01 00 06 73 65 74 49 6e 74 01 (ILjava/lang/String;)V...setInt.
0e80 00 05 28 49 49 29 56 01 00 0d 65 78 65 63 75 74 65 55 70 64 61 74 65 01 00 03 28 29 49 01 00 1d ..(II)V...executeUpdate...()I...
0ea0 6a 6f 65 6c 69 62 32 2f 69 6f 2f 4d 6f 6c 65 63 75 6c 65 46 69 6c 65 48 65 6c 70 65 72 01 00 0c joelib2/io/MoleculeFileHelper...
0ec0 67 65 74 4d 6f 6c 52 65 61 64 65 72 01 00 45 28 4c 6a 61 76 61 2f 69 6f 2f 49 6e 70 75 74 53 74 getMolReader..E(Ljava/io/InputSt
0ee0 72 65 61 6d 3b 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 49 4f 54 79 70 65 3b 29 4c 6a 6f 65 6c 69 62 ream;Ljoelib2/io/IOType;)Ljoelib
0f00 32 2f 69 6f 2f 4d 6f 6c 65 63 75 6c 65 46 69 6c 65 49 4f 3b 01 00 19 6a 6f 65 6c 69 62 32 2f 69 2/io/MoleculeFileIO;...joelib2/i
0f20 6f 2f 4d 6f 6c 65 63 75 6c 65 46 69 6c 65 49 4f 01 00 08 72 65 61 64 61 62 6c 65 01 00 11 67 65 o/MoleculeFileIO...readable...ge
0f40 74 52 65 70 72 65 73 65 6e 74 61 74 69 6f 6e 01 00 29 28 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 49 tRepresentation..)(Ljoelib2/io/I
0f60 4f 54 79 70 65 3b 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 49 4f 54 79 70 65 3b 29 56 01 00 04 72 65 OType;Ljoelib2/io/IOType;)V...re
0f80 61 64 01 00 1e 28 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 ad...(Ljoelib2/molecule/Molecule
0fa0 3b 29 5a 01 00 07 69 73 45 6d 70 74 79 01 00 0f 6a 61 76 61 2f 6c 61 6e 67 2f 43 6c 61 73 73 01 ;)Z...isEmpty...java/lang/Class.
0fc0 00 07 67 65 74 4e 61 6d 65 01 00 0b 67 65 74 49 6e 73 74 61 6e 63 65 01 00 2f 28 4c 6a 61 76 61 ..getName...getInstance../(Ljava
0fe0 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f /lang/String;)Lorg/apache/log4j/
1000 43 61 74 65 67 6f 72 79 3b 00 21 00 13 00 6a 00 00 00 0a 00 0a 00 6b 00 6c 00 00 00 1a 00 6d 00 Category;.!...j.......k.l.....m.
1020 6e 00 00 00 1a 00 6f 00 6e 00 00 00 1a 00 70 00 6e 00 00 00 01 00 71 00 72 00 00 00 11 00 73 00 n.....o.n.....p.n.....q.r.....s.
1040 74 00 00 00 11 00 75 00 74 00 00 00 11 00 76 00 74 00 00 00 02 00 77 00 78 00 00 00 02 00 79 00 t.....u.t.....v.t.....w.x.....y.
1060 7a 00 00 00 0b 00 01 00 7b 00 7c 00 01 00 7d 00 00 00 84 00 05 00 01 00 00 00 78 2a b7 00 01 2a z.......{.|...}...........x*...*
1080 12 02 b5 00 03 2a bb 00 04 59 12 05 12 06 b7 00 07 b5 00 08 2a bb 00 04 59 12 09 12 06 b7 00 07 .....*...Y..........*...Y.......
10a0 b5 00 0a 2a bb 00 04 59 12 0b 12 06 b7 00 07 b5 00 0c 2a 04 b5 00 0d 2a 10 07 bd 00 04 59 03 2a ...*...Y..........*....*.....Y.*
10c0 b4 00 0e 53 59 04 2a b4 00 0f 53 59 05 2a b4 00 10 53 59 06 2a b4 00 11 53 59 07 2a b4 00 0a 53 ...SY.*...SY.*...SY.*...SY.*...S
10e0 59 08 2a b4 00 08 53 59 10 06 2a b4 00 0c 53 b5 00 12 b1 00 00 00 00 00 09 00 7e 00 7f 00 01 00 Y.*...SY..*...S...........~.....
1100 7d 00 00 00 5b 00 05 00 02 00 00 00 4f bb 00 13 59 b7 00 14 4c b2 00 15 bb 00 16 59 b7 00 17 12 }...[.......O...Y...L......Y....
1120 18 b6 00 19 2a 03 32 b6 00 19 b6 00 1a b6 00 1b b2 00 15 bb 00 16 59 b7 00 17 12 1c b6 00 19 2a ....*.2...............Y........*
1140 04 32 b6 00 19 b6 00 1a b6 00 1b 2b 2a 03 32 b8 00 1d 2a 04 32 b6 00 1e b6 00 1f b1 00 00 00 00 .2.........+*.2...*.2...........
1160 00 01 00 80 00 7c 00 01 00 7d 00 00 00 2b 00 02 00 02 00 00 00 17 2a 2a b4 00 03 b6 00 20 a7 00 .....|...}...+........**........
1180 0e 4c b2 00 15 2b b6 00 22 b6 00 23 b1 00 01 00 00 00 08 00 0b 00 21 00 00 00 01 00 80 00 81 00 .L...+.."..#..........!.........
11a0 02 00 7d 00 00 01 8d 00 03 00 04 00 00 01 79 01 4d b8 00 24 b6 00 25 99 01 64 b8 00 24 b6 00 26 ..}...........y.M..$..%..d..$..&
11c0 4d b8 00 24 2b b6 00 27 9a 01 26 2c bb 00 16 59 b7 00 17 12 28 b6 00 19 2b b6 00 19 12 29 b6 00 M..$+..'..&,...Y....(...+....)..
11e0 19 2a b4 00 0e b6 00 2a b6 00 19 12 2b b6 00 19 2a b4 00 0e b6 00 2c b6 00 19 12 2d b6 00 19 2a .*.....*....+...*.....,....-...*
1200 b4 00 0f b6 00 2a b6 00 19 12 2b b6 00 19 2a b4 00 0f b6 00 2c b6 00 19 12 2d b6 00 19 2a b4 00 .....*....+...*.....,....-...*..
1220 10 b6 00 2a b6 00 19 12 2b b6 00 19 2a b4 00 10 b6 00 2c b6 00 19 12 2d b6 00 19 2a b4 00 11 b6 ...*....+...*.....,....-...*....
1240 00 2a b6 00 19 12 2b b6 00 19 2a b4 00 11 b6 00 2c b6 00 19 12 2d b6 00 19 2a b4 00 0a b6 00 2a .*....+...*.....,....-...*.....*
1260 b6 00 19 12 2b b6 00 19 2a b4 00 0a b6 00 2c b6 00 19 12 2e b6 00 19 2a b4 00 08 b6 00 2a b6 00 ....+...*.....,........*.....*..
1280 19 12 2b b6 00 19 2a b4 00 08 b6 00 2c b6 00 19 12 2e b6 00 19 2a b4 00 0c b6 00 2a b6 00 19 12 ..+...*.....,........*.....*....
12a0 2b b6 00 19 2a b4 00 0c b6 00 2c b6 00 19 12 2d b6 00 19 12 2f b6 00 19 2a b4 00 0f b6 00 2a b6 +...*.....,....-..../...*.....*.
12c0 00 19 12 2e b6 00 19 2a b4 00 10 b6 00 2a b6 00 19 12 2e b6 00 19 2a b4 00 11 b6 00 2a b6 00 19 .......*.....*........*.....*...
12e0 12 30 b6 00 19 b6 00 1a b9 00 31 02 00 57 b2 00 15 b6 00 32 99 00 1c b2 00 15 bb 00 16 59 b7 00 .0........1..W.....2.........Y..
1300 17 12 33 b6 00 19 2b b6 00 19 b6 00 1a b6 00 34 a7 00 17 4e 2d b6 00 35 a7 00 0f b2 00 15 12 36 ..3...+........4...N-..5.......6
1320 b6 00 37 04 b8 00 38 b1 00 01 00 12 01 61 01 64 00 21 00 00 00 82 00 00 00 04 00 01 00 21 00 01 ..7...8......a.d.!...........!..
1340 00 83 00 84 00 01 00 7d 00 00 00 2a 00 02 00 02 00 00 00 16 2a 2a b4 00 03 b6 00 39 ac 4c b2 00 .......}...*........**.....9.L..
1360 15 2b b6 00 22 b6 00 23 03 ac 00 01 00 00 00 08 00 09 00 21 00 00 00 01 00 83 00 85 00 02 00 7d .+.."..#...........!...........}
1380 00 00 00 1f 00 02 00 02 00 00 00 13 b8 00 24 b6 00 25 99 00 0b b8 00 24 2b b6 00 27 ac 03 ac 00 ..............$..%.....$+..'....
13a0 00 00 00 00 82 00 00 00 04 00 01 00 21 00 01 00 86 00 87 00 01 00 7d 00 00 00 11 00 01 00 01 00 ............!.........}.........
13c0 00 00 05 2a b4 00 12 b0 00 00 00 00 00 01 00 88 00 89 00 01 00 7d 00 00 00 2e 00 06 00 05 00 00 ...*.................}..........
13e0 00 1a 2a 2b 2c 1d 04 03 b6 00 3a a7 00 10 3a 04 b2 00 15 19 04 b6 00 22 b6 00 23 b1 00 01 00 00 ..*+,.....:...:........"..#.....
1400 00 09 00 0c 00 21 00 00 00 01 00 88 00 8a 00 02 00 7d 00 00 02 9c 00 05 00 13 00 00 02 88 01 3a .....!...........}.............:
1420 06 01 3a 07 04 36 08 b8 00 24 b6 00 25 99 02 78 b8 00 24 b6 00 3b 3a 07 01 3a 09 01 3a 0a 01 3a ..:..6...$..%..x..$..;:..:..:..:
1440 0b 01 3a 0c 01 3a 0d 2c b2 00 3c b9 00 3d 02 00 3a 09 2c b2 00 3e b9 00 3d 02 00 3a 0a 2c b2 00 ..:..:.,..<..=..:.,..>..=..:.,..
1460 3f b9 00 3d 02 00 3a 0b 19 09 c7 00 21 b2 00 15 bb 00 16 59 b7 00 17 b2 00 3c b6 00 40 b6 00 19 ?..=..:.....!......Y.....<..@...
1480 12 41 b6 00 19 b6 00 1a b6 00 37 19 0a c7 00 21 b2 00 15 bb 00 16 59 b7 00 17 b2 00 3e b6 00 40 .A........7....!......Y.....>..@
14a0 b6 00 19 12 41 b6 00 19 b6 00 1a b6 00 37 19 0b c7 00 21 b2 00 15 bb 00 16 59 b7 00 17 b2 00 3f ....A........7....!......Y.....?
14c0 b6 00 40 b6 00 19 12 41 b6 00 19 b6 00 1a b6 00 37 19 07 bb 00 16 59 b7 00 17 12 42 b6 00 19 2b ..@....A........7.....Y....B...+
14e0 b6 00 19 12 43 b6 00 19 b6 00 1a b9 00 44 02 00 3a 06 2a 2c b6 00 45 3a 0e 19 0e 03 2e 36 0f 19 ....C........D..:.*,..E:.....6..
1500 0e 04 2e 36 10 01 3a 0d 2a 2b 2a b4 00 0e b6 00 2a 2a b4 00 11 b6 00 2a 15 10 b8 00 46 b6 00 47 ...6..:.*+*.....**.....*....F..G
1520 3a 11 19 11 b9 00 48 01 00 99 00 16 19 11 2a b4 00 0e b6 00 2a b9 00 49 02 00 3a 0d a7 ff e6 19 :.....H.......*.....*..I..:.....
1540 0d c6 00 36 15 05 9a 00 06 03 36 08 b2 00 15 bb 00 16 59 b7 00 17 2c b9 00 4a 01 00 b6 00 19 12 ...6......6.......Y...,..J......
1560 4b b6 00 19 19 0d b6 00 19 12 4c b6 00 19 b6 00 1a b6 00 23 a7 00 81 01 3a 0c 2a 2b 2a b4 00 0e K.........L........#....:.*+*...
1580 b6 00 2a 2a b4 00 10 b6 00 2a 15 0f b8 00 46 b6 00 47 3a 11 19 11 b9 00 48 01 00 99 00 16 19 11 ..**.....*....F..G:.....H.......
15a0 2a b4 00 0e b6 00 2a b9 00 49 02 00 3a 0c a7 ff e6 19 0c c6 00 42 15 05 9a 00 06 03 36 08 b2 00 *.....*..I..:........B......6...
15c0 15 bb 00 16 59 b7 00 17 12 4d b6 00 19 2c b9 00 4a 01 00 b6 00 19 12 4b b6 00 19 19 0c b6 00 19 ....Y....M...,..J......K........
15e0 12 4e b6 00 19 15 0f b6 00 4f 12 50 b6 00 19 b6 00 1a b6 00 23 15 08 99 00 ae 19 06 04 2c b9 00 .N.......O.P........#........,..
1600 4a 01 00 b9 00 51 03 00 19 06 05 1d b9 00 52 03 00 19 06 06 15 0f b9 00 52 03 00 19 06 07 15 10 J....Q........R.........R.......
1620 b9 00 52 03 00 19 06 08 19 09 b9 00 51 03 00 19 06 10 06 19 0a b9 00 51 03 00 19 06 10 07 19 0b ..R.........Q..........Q........
1640 b9 00 51 03 00 19 06 b9 00 53 01 00 57 a7 00 2c 3a 12 b2 00 15 bb 00 16 59 b7 00 17 12 55 b6 00 ..Q......S..W..,:.......Y....U..
1660 19 2c b9 00 4a 01 00 b6 00 19 12 56 b6 00 19 1d b6 00 4f b6 00 1a b6 00 37 b2 00 15 b6 00 32 99 .,..J......V......O.....7.....2.
1680 00 26 b2 00 15 bb 00 16 59 b7 00 17 12 57 b6 00 19 2c b9 00 4a 01 00 b6 00 19 12 58 b6 00 19 b6 .&......Y....W...,..J......X....
16a0 00 1a b6 00 34 b1 00 01 01 dc 02 2f 02 32 00 54 00 00 00 82 00 00 00 04 00 01 00 21 00 01 00 8b ....4....../.2.T...........!....
16c0 00 8c 00 01 00 7d 00 00 01 08 00 06 00 08 00 00 00 e4 2a b6 00 59 9a 00 07 2a b6 00 5a 01 4e 01 .....}............*..Y...*..Z.N.
16e0 3a 04 bb 00 5b 59 2b b7 00 5c 4e 2d 2c b8 00 5d 3a 04 a7 00 0a 3a 05 19 05 b6 00 35 19 04 b9 00 :...[Y+..\N-,..]:....:.....5....
1700 5e 01 00 9a 00 2b b2 00 15 bb 00 16 59 b7 00 17 2c b6 00 5f b6 00 19 12 60 b6 00 19 b6 00 1a b6 ^....+......Y...,.._....`.......
1720 00 37 b2 00 15 12 61 b6 00 37 04 b8 00 38 bb 00 62 59 2c 2c b7 00 63 3a 05 19 04 19 05 b9 00 64 .7....a..7...8..bY,,..c:.......d
1740 02 00 36 06 15 06 9a 00 06 a7 00 6c 19 05 b9 00 65 01 00 99 00 0f b2 00 15 12 66 b6 00 37 04 b8 ..6........l....e.........f..7..
1760 00 38 b2 00 15 b6 00 32 99 00 22 b2 00 15 bb 00 16 59 b7 00 17 12 67 b6 00 19 19 05 b9 00 4a 01 .8.....2.."......Y....g.......J.
1780 00 b6 00 19 b6 00 1a b6 00 34 2a 2a b4 00 03 19 05 2a b4 00 0d 04 03 b6 00 3a a7 00 0e 3a 07 19 .........4**.....*.......:...:..
17a0 07 b6 00 35 04 b8 00 38 2a 59 b4 00 0d 04 60 b5 00 0d a7 ff 87 b1 00 03 00 10 00 20 00 23 00 21 ...5...8*Y....`..............#.!
17c0 00 67 00 77 00 cb 00 21 00 7a 00 c8 00 cb 00 21 00 00 00 08 00 8d 00 7c 00 01 00 7d 00 00 00 3a .g.w...!.z.....!.......|...}...:
17e0 00 02 00 00 00 00 00 2e 13 00 13 b6 00 68 b8 00 69 b3 00 15 b8 00 1d 12 09 b6 00 1e b3 00 3c b8 .............h..i.............<.
1800 00 1d 12 05 b6 00 1e b3 00 3e b8 00 1d 12 0b b6 00 1e b3 00 3f b1 00 00 00 00 00 00 .........>..........?.......