summaryrefslogtreecommitdiff
path: root/java/joelib2/util/database/SimpleJOELibDatabase.class
blob: 1955623bb241f57a3302fd5e2777f397e4aa5141 (plain)
ofshex dumpascii
0000 ca fe ba be 00 00 00 31 01 4a 0a 00 6b 00 8f 08 00 90 09 00 6a 00 91 07 00 92 08 00 70 08 00 93 .......1.J..k.......j.......p...
0020 0a 00 04 00 94 09 00 6a 00 95 08 00 6e 09 00 6a 00 96 08 00 71 09 00 6a 00 97 09 00 6a 00 98 09 .......j....n..j....q..j....j...
0040 00 6a 00 99 09 00 6a 00 9a 09 00 6a 00 9b 09 00 6a 00 9c 09 00 6a 00 9d 07 00 9e 0a 00 13 00 8f .j....j....j....j....j..........
0060 09 00 6a 00 9f 07 00 a0 0a 00 16 00 8f 08 00 a1 0a 00 16 00 a2 0a 00 16 00 a3 0a 00 a4 00 a5 08 ..j.............................
0080 00 a6 0a 00 a7 00 a8 0a 00 a7 00 a9 0a 00 13 00 aa 0a 00 6a 00 ab 07 00 ac 0a 00 21 00 ad 0a 00 ...................j.......!....
00a0 a4 00 ae 0a 00 af 00 b0 0a 00 af 00 b1 0a 00 af 00 b2 0a 00 af 00 b3 08 00 b4 08 00 b5 0a 00 04 ................................
00c0 00 b6 08 00 b7 0a 00 04 00 b8 08 00 b9 08 00 ba 08 00 bb 08 00 bc 0b 00 bd 00 be 0a 00 a4 00 bf ................................
00e0 08 00 c0 0a 00 a4 00 c1 0a 00 21 00 c2 08 00 c3 0a 00 a4 00 c4 0a 00 c5 00 c6 0a 00 6a 00 b3 0a ..........!.................j...
0100 00 6a 00 c7 0a 00 af 00 c8 09 00 6a 00 c9 0b 00 ca 00 cb 09 00 6a 00 cc 09 00 6a 00 cd 0a 00 ce .j.........j.........j....j.....
0120 00 a3 08 00 cf 08 00 d0 08 00 d1 0b 00 d2 00 d3 0a 00 6a 00 d4 0a 00 d5 00 d6 0a 00 6a 00 d7 0b ..................j.........j...
0140 00 d8 00 d9 0b 00 d8 00 da 0b 00 ca 00 db 08 00 dc 08 00 dd 08 00 de 08 00 df 0a 00 16 00 e0 08 ................................
0160 00 e1 0b 00 e2 00 e3 0b 00 e2 00 e4 0b 00 e2 00 e5 07 00 e6 08 00 e7 08 00 e8 08 00 e9 08 00 ea ................................
0180 0a 00 6a 00 eb 0a 00 6a 00 ec 07 00 ed 0a 00 5b 00 ee 0a 00 ef 00 f0 0b 00 f1 00 f2 0a 00 ce 00 ..j....j.......[................
01a0 f3 08 00 f4 08 00 f5 07 00 f6 0a 00 62 00 f7 0b 00 f1 00 f8 0b 00 ca 00 f9 08 00 fa 08 00 fb 08 ............b...................
01c0 00 fc 0a 00 a4 00 fd 07 00 fe 07 00 ff 01 00 06 6c 6f 67 67 65 72 01 00 1b 4c 6f 72 67 2f 61 70 ................logger...Lorg/ap
01e0 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 3b 01 00 03 53 44 46 01 00 18 4c 6a 6f ache/log4j/Category;...SDF...Ljo
0200 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 65 3b 01 00 03 43 4d 4c 01 00 06 53 4d elib2/io/BasicIOType;...CML...SM
0220 49 4c 45 53 01 00 10 64 65 66 61 75 6c 74 54 61 62 6c 65 4e 61 6d 65 01 00 12 4c 6a 61 76 61 2f ILES...defaultTableName...Ljava/
0240 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 0b 70 72 6f 70 65 72 74 79 43 4d 4c 01 00 26 4c 6a 6f lang/String;...propertyCML..&Ljo
0260 65 6c 69 62 32 2f 75 74 69 6c 2f 74 79 70 65 73 2f 42 61 73 69 63 53 74 72 69 6e 67 53 74 72 69 elib2/util/types/BasicStringStri
0280 6e 67 3b 01 00 0b 70 72 6f 70 65 72 74 79 53 44 46 01 00 0e 70 72 6f 70 65 72 74 79 53 4d 49 4c ng;...propertySDF...propertySMIL
02a0 45 53 01 00 09 64 65 66 61 75 6c 74 49 44 01 00 01 49 01 00 0f 74 61 62 6c 65 50 72 6f 70 65 72 ES...defaultID...I...tableProper
02c0 74 69 65 73 01 00 27 5b 4c 6a 6f 65 6c 69 62 32 2f 75 74 69 6c 2f 74 79 70 65 73 2f 42 61 73 69 ties..'[Ljoelib2/util/types/Basi
02e0 63 53 74 72 69 6e 67 53 74 72 69 6e 67 3b 01 00 06 3c 69 6e 69 74 3e 01 00 03 28 29 56 01 00 04 cStringString;...<init>...()V...
0300 43 6f 64 65 01 00 04 6d 61 69 6e 01 00 16 28 5b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e Code...main...([Ljava/lang/Strin
0320 67 3b 29 56 01 00 0b 63 72 65 61 74 65 54 61 62 6c 65 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 g;)V...createTable...(Ljava/lang
0340 2f 53 74 72 69 6e 67 3b 29 56 01 00 0a 45 78 63 65 70 74 69 6f 6e 73 01 00 0b 65 78 69 73 74 73 /String;)V...Exceptions...exists
0360 54 61 62 6c 65 01 00 03 28 29 5a 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 Table...()Z...(Ljava/lang/String
0380 3b 29 5a 01 00 12 67 65 74 54 61 62 6c 65 50 72 6f 70 65 72 74 69 65 73 01 00 29 28 29 5b 4c 6a ;)Z...getTableProperties..)()[Lj
03a0 6f 65 6c 69 62 32 2f 75 74 69 6c 2f 74 79 70 65 73 2f 42 61 73 69 63 53 74 72 69 6e 67 53 74 72 oelib2/util/types/BasicStringStr
03c0 69 6e 67 3b 01 00 0e 69 6e 73 65 72 74 4d 6f 6c 65 63 75 6c 65 01 00 31 28 4c 6a 61 76 61 2f 6c ing;...insertMolecule..1(Ljava/l
03e0 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c ang/String;Ljoelib2/molecule/Mol
0400 65 63 75 6c 65 3b 49 29 56 01 00 33 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c ecule;I)V..3(Ljava/lang/String;L
0420 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 49 5a 5a 29 56 01 joelib2/molecule/Molecule;IZZ)V.
0440 00 13 73 74 6f 72 65 4d 6f 6c 73 49 6e 44 61 74 61 62 61 73 65 01 00 2d 28 4c 6a 61 76 61 2f 6c ..storeMolsInDatabase..-(Ljava/l
0460 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 ang/String;Ljoelib2/io/BasicIOTy
0480 70 65 3b 29 56 01 00 08 3c 63 6c 69 6e 69 74 3e 0c 00 7c 00 7d 01 00 09 4d 4f 4c 45 43 55 4c 45 pe;)V...<clinit>..|.}...MOLECULE
04a0 53 0c 00 72 00 73 01 00 24 6a 6f 65 6c 69 62 32 2f 75 74 69 6c 2f 74 79 70 65 73 2f 42 61 73 69 S..r.s..$joelib2/util/types/Basi
04c0 63 53 74 72 69 6e 67 53 74 72 69 6e 67 01 00 08 4c 4f 4e 47 54 45 58 54 0c 00 7c 01 00 0c 00 74 cStringString...LONGTEXT..|....t
04e0 00 75 0c 00 76 00 75 0c 00 77 00 75 0c 00 78 00 79 0c 01 01 00 75 0c 01 02 00 75 0c 01 03 00 75 .u..v.u..w.u..x.y....u....u....u
0500 0c 01 04 00 75 0c 00 7a 00 7b 01 00 29 6a 6f 65 6c 69 62 32 2f 75 74 69 6c 2f 64 61 74 61 62 61 ....u..z.{..)joelib2/util/databa
0520 73 65 2f 42 61 73 69 63 4a 4f 45 4c 69 62 44 61 74 61 62 61 73 65 0c 00 6c 00 6d 01 00 17 6a 61 se/BasicJOELibDatabase..l.m...ja
0540 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 01 00 0a 4f 70 65 6e 20 66 69 6c va/lang/StringBuilder...Open.fil
0560 65 3a 0c 01 05 01 06 0c 01 07 01 08 07 01 09 0c 01 0a 01 0b 01 00 10 77 69 74 68 20 69 6e 70 75 e:.....................with.inpu
0580 74 20 74 79 70 65 3a 07 01 0c 0c 01 0d 01 0e 0c 01 0f 01 10 0c 00 8c 00 8d 0c 00 81 00 82 01 00 t.type:.........................
05a0 13 6a 61 76 61 2f 6c 61 6e 67 2f 45 78 63 65 70 74 69 6f 6e 0c 01 11 01 08 0c 01 12 01 0b 07 01 .java/lang/Exception............
05c0 13 0c 01 0d 01 14 0c 01 15 00 85 0c 01 16 01 17 0c 00 84 00 86 01 00 0d 43 52 45 41 54 45 20 54 ........................CREATE.T
05e0 41 42 4c 45 20 01 00 02 20 28 0c 01 18 01 08 01 00 01 20 0c 01 19 01 08 01 00 0c 20 4e 4f 54 20 ABLE.....(..................NOT.
0600 4e 55 4c 4c 20 2c 20 01 00 02 2c 20 01 00 25 43 4f 4e 53 54 52 41 49 4e 54 20 50 55 52 50 4f 53 NULL.,....,...%CONSTRAINT.PURPOS
0620 45 44 4d 4f 4c 53 20 50 52 49 4d 41 52 59 20 4b 45 59 20 28 01 00 03 29 20 29 07 01 1a 0c 01 1b EDMOLS.PRIMARY.KEY.(...).)......
0640 00 86 0c 01 1c 00 85 01 00 0f 43 72 65 61 74 65 64 20 74 61 62 6c 65 3a 20 0c 01 1d 01 0b 0c 01 ..........Created.table:........
0660 1e 00 7d 01 00 2b 44 61 74 61 62 61 73 65 20 63 6f 6e 6e 65 63 74 69 6f 6e 20 63 61 6e 20 6e 6f ..}..+Database.connection.can.no
0680 74 20 62 65 20 65 73 74 61 62 6c 69 73 68 65 64 2e 0c 01 1f 01 0b 07 01 20 0c 01 21 01 22 0c 00 t.be.established...........!."..
06a0 89 00 8b 0c 01 23 01 24 0c 00 6e 00 6f 07 01 25 0c 01 07 01 26 0c 00 70 00 6f 0c 00 71 00 6f 07 .....#.$..n.o..%....&..p.o..q.o.
06c0 01 27 01 00 19 20 74 79 70 65 20 63 61 6e 20 6e 6f 74 20 62 65 20 63 72 65 61 74 65 64 2e 01 00 .'....type.can.not.be.created...
06e0 0c 49 4e 53 45 52 54 20 49 4e 54 4f 20 01 00 47 20 28 4e 41 4d 45 2c 20 49 44 2c 20 48 41 53 48 .INSERT.INTO...G.(NAME,.ID,.HASH
0700 2c 20 53 48 41 53 48 2c 20 53 44 46 2c 20 43 4d 4c 2c 20 53 4d 49 4c 45 53 29 20 56 41 4c 55 45 ,.SHASH,.SDF,.CML,.SMILES).VALUE
0720 53 20 28 3f 2c 20 3f 2c 20 3f 2c 20 3f 2c 20 3f 2c 20 3f 2c 20 3f 29 07 01 28 0c 01 29 01 2a 0c S.(?,.?,.?,.?,.?,.?,.?)..(..).*.
0740 01 2b 01 2c 07 01 2d 0c 01 07 01 2e 0c 01 2f 01 30 07 01 31 0c 01 32 00 85 0c 01 33 01 34 0c 01 .+.,..-......./.0..1..2....3.4..
0760 35 01 08 01 00 0b 20 65 78 69 73 74 73 20 61 73 20 01 00 12 2c 20 69 74 20 69 73 20 6e 6f 74 20 5......exists.as....,.it.is.not.
0780 61 64 64 65 64 2e 01 00 1b 43 68 65 63 6b 20 69 66 20 65 71 75 61 6c 20 6d 6f 6c 65 63 75 6c 65 added....Check.if.equal.molecule
07a0 73 20 21 20 01 00 12 2e 20 42 6f 74 68 20 68 61 76 65 20 48 41 53 48 3d 27 0c 01 05 01 36 01 00 s.!......Both.have.HASH='....6..
07c0 01 27 07 01 37 0c 01 38 01 39 0c 01 3a 01 3b 0c 01 3c 01 3d 01 00 15 6a 61 76 61 2f 73 71 6c 2f .'..7..8.9..:.;..<.=...java/sql/
07e0 53 51 4c 45 78 63 65 70 74 69 6f 6e 01 00 27 45 6e 74 72 79 20 65 78 69 73 74 73 20 61 6c 72 65 SQLException..'Entry.exists.alre
0800 61 64 79 20 69 6e 20 64 61 74 61 62 61 73 65 3a 20 4e 61 6d 65 3a 01 00 04 20 49 64 3a 01 00 0a ady.in.database:.Name:....Id:...
0820 4d 6f 6c 65 63 75 6c 65 20 27 01 00 18 27 20 77 61 73 20 61 64 64 65 64 20 74 6f 20 64 61 74 61 Molecule.'...'.was.added.to.data
0840 62 61 73 65 2e 0c 00 84 00 85 0c 00 81 00 7d 01 00 17 6a 61 76 61 2f 69 6f 2f 46 69 6c 65 49 6e base..........}...java/io/FileIn
0860 70 75 74 53 74 72 65 61 6d 0c 00 7c 00 82 07 01 3e 0c 01 3f 01 40 07 01 41 0c 01 42 00 85 0c 01 putStream..|....>..?.@..A..B....
0880 43 01 08 01 00 11 20 69 73 20 6e 6f 74 20 72 65 61 64 61 62 6c 65 2e 01 00 20 59 6f 75 27 72 65 C......is.not.readable....You're
08a0 20 69 6e 76 69 74 65 64 20 74 6f 20 77 72 69 74 65 20 6f 6e 65 20 21 3b 2d 29 01 00 27 6a 6f 65 .invited.to.write.one.!;-)..'joe
08c0 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 42 61 73 69 63 43 6f 6e 66 6f 72 6d 65 72 4d 6f 6c 65 lib2/molecule/BasicConformerMole
08e0 63 75 6c 65 0c 00 7c 01 44 0c 01 45 01 46 0c 01 47 00 85 01 00 13 4e 6f 20 6d 6f 6c 65 63 75 6c cule..|.D..E.F..G.....No.molecul
0900 65 20 6c 6f 61 64 65 64 2e 01 00 0b 74 72 79 20 74 6f 20 61 64 64 20 01 00 2a 6a 6f 65 6c 69 62 e.loaded....try.to.add...*joelib
0920 32 2e 75 74 69 6c 2e 64 61 74 61 62 61 73 65 2e 53 69 6d 70 6c 65 4a 4f 45 4c 69 62 44 61 74 61 2.util.database.SimpleJOELibData
0940 62 61 73 65 0c 01 48 01 49 01 00 2a 6a 6f 65 6c 69 62 32 2f 75 74 69 6c 2f 64 61 74 61 62 61 73 base..H.I..*joelib2/util/databas
0960 65 2f 53 69 6d 70 6c 65 4a 4f 45 4c 69 62 44 61 74 61 62 61 73 65 01 00 26 6a 6f 65 6c 69 62 32 e/SimpleJOELibDatabase..&joelib2
0980 2f 75 74 69 6c 2f 64 61 74 61 62 61 73 65 2f 41 62 73 74 72 61 63 74 44 61 74 61 62 61 73 65 01 /util/database/AbstractDatabase.
09a0 00 27 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f .'(Ljava/lang/String;Ljava/lang/
09c0 53 74 72 69 6e 67 3b 29 56 01 00 0c 70 72 6f 70 65 72 74 79 4e 41 4d 45 01 00 0a 70 72 6f 70 65 String;)V...propertyNAME...prope
09e0 72 74 79 49 44 01 00 0c 70 72 6f 70 65 72 74 79 48 41 53 48 01 00 0d 70 72 6f 70 65 72 74 79 53 rtyID...propertyHASH...propertyS
0a00 48 41 53 48 01 00 06 61 70 70 65 6e 64 01 00 2d 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 HASH...append..-(Ljava/lang/Stri
0a20 6e 67 3b 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 75 69 6c 64 65 72 3b 01 00 08 ng;)Ljava/lang/StringBuilder;...
0a40 74 6f 53 74 72 69 6e 67 01 00 14 28 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 toString...()Ljava/lang/String;.
0a60 00 19 6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 01 00 04 69 6e ..org/apache/log4j/Category...in
0a80 66 6f 01 00 15 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 4f 62 6a 65 63 74 3b 29 56 01 00 1c 6a 6f 65 fo...(Ljava/lang/Object;)V...joe
0aa0 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 65 48 6f 6c 64 65 72 01 00 08 69 6e 73 74 lib2/io/BasicIOTypeHolder...inst
0ac0 61 6e 63 65 01 00 20 28 29 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 65 ance...()Ljoelib2/io/BasicIOType
0ae0 48 6f 6c 64 65 72 3b 01 00 09 67 65 74 49 4f 54 79 70 65 01 00 2c 28 4c 6a 61 76 61 2f 6c 61 6e Holder;...getIOType..,(Ljava/lan
0b00 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f 54 79 70 g/String;)Ljoelib2/io/BasicIOTyp
0b20 65 3b 01 00 0a 67 65 74 4d 65 73 73 61 67 65 01 00 04 77 61 72 6e 01 00 22 77 73 69 2f 72 61 2f e;...getMessage...warn.."wsi/ra/
0b40 64 61 74 61 62 61 73 65 2f 44 61 74 61 62 61 73 65 43 6f 6e 6e 65 63 74 69 6f 6e 01 00 26 28 29 database/DatabaseConnection..&()
0b60 4c 77 73 69 2f 72 61 2f 64 61 74 61 62 61 73 65 2f 44 61 74 61 62 61 73 65 43 6f 6e 6e 65 63 74 Lwsi/ra/database/DatabaseConnect
0b80 69 6f 6e 3b 01 00 15 69 73 43 6f 6e 6e 65 63 74 69 6f 6e 41 76 61 69 6c 61 62 6c 65 01 00 0c 67 ion;...isConnectionAvailable...g
0ba0 65 74 53 74 61 74 65 6d 65 6e 74 01 00 16 28 29 4c 6a 61 76 61 2f 73 71 6c 2f 53 74 61 74 65 6d etStatement...()Ljava/sql/Statem
0bc0 65 6e 74 3b 01 00 0f 67 65 74 53 74 72 69 6e 67 56 61 6c 75 65 31 01 00 0f 67 65 74 53 74 72 69 ent;...getStringValue1...getStri
0be0 6e 67 56 61 6c 75 65 32 01 00 12 6a 61 76 61 2f 73 71 6c 2f 53 74 61 74 65 6d 65 6e 74 01 00 07 ngValue2...java/sql/Statement...
0c00 65 78 65 63 75 74 65 01 00 0e 69 73 44 65 62 75 67 45 6e 61 62 6c 65 64 01 00 05 64 65 62 75 67 execute...isDebugEnabled...debug
0c20 01 00 0f 70 72 69 6e 74 53 74 61 63 6b 54 72 61 63 65 01 00 05 65 72 72 6f 72 01 00 10 6a 61 76 ...printStackTrace...error...jav
0c40 61 2f 6c 61 6e 67 2f 53 79 73 74 65 6d 01 00 04 65 78 69 74 01 00 04 28 49 29 56 01 00 0d 67 65 a/lang/System...exit...(I)V...ge
0c60 74 43 6f 6e 6e 65 63 74 69 6f 6e 01 00 17 28 29 4c 6a 61 76 61 2f 73 71 6c 2f 43 6f 6e 6e 65 63 tConnection...()Ljava/sql/Connec
0c80 74 69 6f 6e 3b 01 00 19 6a 6f 65 6c 69 62 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c tion;...joelib2/molecule/Molecul
0ca0 65 01 00 27 28 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 49 4f 54 79 70 65 3b 29 4c 6a 61 76 61 2f 6c e..'(Ljoelib2/io/IOType;)Ljava/l
0cc0 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 16 6a 6f 65 6c 69 62 32 2f 69 6f 2f 42 61 73 69 63 49 4f ang/String;...joelib2/io/BasicIO
0ce0 54 79 70 65 01 00 13 6a 61 76 61 2f 73 71 6c 2f 43 6f 6e 6e 65 63 74 69 6f 6e 01 00 10 70 72 65 Type...java/sql/Connection...pre
0d00 70 61 72 65 53 74 61 74 65 6d 65 6e 74 01 00 30 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 pareStatement..0(Ljava/lang/Stri
0d20 6e 67 3b 29 4c 6a 61 76 61 2f 73 71 6c 2f 50 72 65 70 61 72 65 64 53 74 61 74 65 6d 65 6e 74 3b ng;)Ljava/sql/PreparedStatement;
0d40 01 00 0f 67 65 74 4d 6f 6c 65 63 75 6c 65 48 41 53 48 01 00 1f 28 4c 6a 6f 65 6c 69 62 32 2f 6d ...getMoleculeHASH...(Ljoelib2/m
0d60 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 29 5b 49 01 00 11 6a 61 76 61 2f 6c 61 6e 67 olecule/Molecule;)[I...java/lang
0d80 2f 49 6e 74 65 67 65 72 01 00 15 28 49 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b /Integer...(I)Ljava/lang/String;
0da0 01 00 08 73 65 6c 65 63 74 42 79 01 00 5e 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 ...selectBy..^(Ljava/lang/String
0dc0 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 ;Ljava/lang/String;Ljava/lang/St
0de0 72 69 6e 67 3b 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 61 76 61 2f 73 71 ring;Ljava/lang/String;)Ljava/sq
0e00 6c 2f 52 65 73 75 6c 74 53 65 74 3b 01 00 12 6a 61 76 61 2f 73 71 6c 2f 52 65 73 75 6c 74 53 65 l/ResultSet;...java/sql/ResultSe
0e20 74 01 00 04 6e 65 78 74 01 00 09 67 65 74 53 74 72 69 6e 67 01 00 26 28 4c 6a 61 76 61 2f 6c 61 t...next...getString..&(Ljava/la
0e40 6e 67 2f 53 74 72 69 6e 67 3b 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 3b 01 00 08 ng/String;)Ljava/lang/String;...
0e60 67 65 74 54 69 74 6c 65 01 00 1c 28 49 29 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 69 6e 67 42 getTitle...(I)Ljava/lang/StringB
0e80 75 69 6c 64 65 72 3b 01 00 1a 6a 61 76 61 2f 73 71 6c 2f 50 72 65 70 61 72 65 64 53 74 61 74 65 uilder;...java/sql/PreparedState
0ea0 6d 65 6e 74 01 00 09 73 65 74 53 74 72 69 6e 67 01 00 16 28 49 4c 6a 61 76 61 2f 6c 61 6e 67 2f ment...setString...(ILjava/lang/
0ec0 53 74 72 69 6e 67 3b 29 56 01 00 06 73 65 74 49 6e 74 01 00 05 28 49 49 29 56 01 00 0d 65 78 65 String;)V...setInt...(II)V...exe
0ee0 63 75 74 65 55 70 64 61 74 65 01 00 03 28 29 49 01 00 1d 6a 6f 65 6c 69 62 32 2f 69 6f 2f 4d 6f cuteUpdate...()I...joelib2/io/Mo
0f00 6c 65 63 75 6c 65 46 69 6c 65 48 65 6c 70 65 72 01 00 0c 67 65 74 4d 6f 6c 52 65 61 64 65 72 01 leculeFileHelper...getMolReader.
0f20 00 45 28 4c 6a 61 76 61 2f 69 6f 2f 49 6e 70 75 74 53 74 72 65 61 6d 3b 4c 6a 6f 65 6c 69 62 32 .E(Ljava/io/InputStream;Ljoelib2
0f40 2f 69 6f 2f 49 4f 54 79 70 65 3b 29 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 4d 6f 6c 65 63 75 6c 65 /io/IOType;)Ljoelib2/io/Molecule
0f60 46 69 6c 65 49 4f 3b 01 00 19 6a 6f 65 6c 69 62 32 2f 69 6f 2f 4d 6f 6c 65 63 75 6c 65 46 69 6c FileIO;...joelib2/io/MoleculeFil
0f80 65 49 4f 01 00 08 72 65 61 64 61 62 6c 65 01 00 11 67 65 74 52 65 70 72 65 73 65 6e 74 61 74 69 eIO...readable...getRepresentati
0fa0 6f 6e 01 00 29 28 4c 6a 6f 65 6c 69 62 32 2f 69 6f 2f 49 4f 54 79 70 65 3b 4c 6a 6f 65 6c 69 62 on..)(Ljoelib2/io/IOType;Ljoelib
0fc0 32 2f 69 6f 2f 49 4f 54 79 70 65 3b 29 56 01 00 04 72 65 61 64 01 00 1e 28 4c 6a 6f 65 6c 69 62 2/io/IOType;)V...read...(Ljoelib
0fe0 32 2f 6d 6f 6c 65 63 75 6c 65 2f 4d 6f 6c 65 63 75 6c 65 3b 29 5a 01 00 07 69 73 45 6d 70 74 79 2/molecule/Molecule;)Z...isEmpty
1000 01 00 0b 67 65 74 49 6e 73 74 61 6e 63 65 01 00 2f 28 4c 6a 61 76 61 2f 6c 61 6e 67 2f 53 74 72 ...getInstance../(Ljava/lang/Str
1020 69 6e 67 3b 29 4c 6f 72 67 2f 61 70 61 63 68 65 2f 6c 6f 67 34 6a 2f 43 61 74 65 67 6f 72 79 3b ing;)Lorg/apache/log4j/Category;
1040 00 21 00 6a 00 6b 00 00 00 0a 00 0a 00 6c 00 6d 00 00 00 1a 00 6e 00 6f 00 00 00 1a 00 70 00 6f .!.j.k.......l.m.....n.o.....p.o
1060 00 00 00 1a 00 71 00 6f 00 00 00 01 00 72 00 73 00 00 00 11 00 74 00 75 00 00 00 11 00 76 00 75 .....q.o.....r.s.....t.u.....v.u
1080 00 00 00 11 00 77 00 75 00 00 00 02 00 78 00 79 00 00 00 02 00 7a 00 7b 00 00 00 0b 00 01 00 7c .....w.u.....x.y.....z.{.......|
10a0 00 7d 00 01 00 7e 00 00 00 84 00 05 00 01 00 00 00 78 2a b7 00 01 2a 12 02 b5 00 03 2a bb 00 04 .}...~...........x*...*.....*...
10c0 59 12 05 12 06 b7 00 07 b5 00 08 2a bb 00 04 59 12 09 12 06 b7 00 07 b5 00 0a 2a bb 00 04 59 12 Y..........*...Y..........*...Y.
10e0 0b 12 06 b7 00 07 b5 00 0c 2a 04 b5 00 0d 2a 10 07 bd 00 04 59 03 2a b4 00 0e 53 59 04 2a b4 00 .........*....*.....Y.*...SY.*..
1100 0f 53 59 05 2a b4 00 10 53 59 06 2a b4 00 11 53 59 07 2a b4 00 0a 53 59 08 2a b4 00 08 53 59 10 .SY.*...SY.*...SY.*...SY.*...SY.
1120 06 2a b4 00 0c 53 b5 00 12 b1 00 00 00 00 00 09 00 7f 00 80 00 01 00 7e 00 00 00 5b 00 05 00 02 .*...S.................~...[....
1140 00 00 00 4f bb 00 13 59 b7 00 14 4c b2 00 15 bb 00 16 59 b7 00 17 12 18 b6 00 19 2a 03 32 b6 00 ...O...Y...L......Y........*.2..
1160 19 b6 00 1a b6 00 1b b2 00 15 bb 00 16 59 b7 00 17 12 1c b6 00 19 2a 04 32 b6 00 19 b6 00 1a b6 .............Y........*.2.......
1180 00 1b 2b 2a 03 32 b8 00 1d 2a 04 32 b6 00 1e b6 00 1f b1 00 00 00 00 00 01 00 81 00 7d 00 01 00 ..+*.2...*.2................}...
11a0 7e 00 00 00 2b 00 02 00 02 00 00 00 17 2a 2a b4 00 03 b6 00 20 a7 00 0e 4c b2 00 15 2b b6 00 22 ~...+........**.........L...+.."
11c0 b6 00 23 b1 00 01 00 00 00 08 00 0b 00 21 00 00 00 01 00 81 00 82 00 02 00 7e 00 00 01 8d 00 03 ..#..........!...........~......
11e0 00 04 00 00 01 79 01 4d b8 00 24 b6 00 25 99 01 64 b8 00 24 b6 00 26 4d b8 00 24 2b b6 00 27 9a .....y.M..$..%..d..$..&M..$+..'.
1200 01 26 2c bb 00 16 59 b7 00 17 12 28 b6 00 19 2b b6 00 19 12 29 b6 00 19 2a b4 00 0e b6 00 2a b6 .&,...Y....(...+....)...*.....*.
1220 00 19 12 2b b6 00 19 2a b4 00 0e b6 00 2c b6 00 19 12 2d b6 00 19 2a b4 00 0f b6 00 2a b6 00 19 ...+...*.....,....-...*.....*...
1240 12 2b b6 00 19 2a b4 00 0f b6 00 2c b6 00 19 12 2d b6 00 19 2a b4 00 10 b6 00 2a b6 00 19 12 2b .+...*.....,....-...*.....*....+
1260 b6 00 19 2a b4 00 10 b6 00 2c b6 00 19 12 2d b6 00 19 2a b4 00 11 b6 00 2a b6 00 19 12 2b b6 00 ...*.....,....-...*.....*....+..
1280 19 2a b4 00 11 b6 00 2c b6 00 19 12 2d b6 00 19 2a b4 00 0a b6 00 2a b6 00 19 12 2b b6 00 19 2a .*.....,....-...*.....*....+...*
12a0 b4 00 0a b6 00 2c b6 00 19 12 2e b6 00 19 2a b4 00 08 b6 00 2a b6 00 19 12 2b b6 00 19 2a b4 00 .....,........*.....*....+...*..
12c0 08 b6 00 2c b6 00 19 12 2e b6 00 19 2a b4 00 0c b6 00 2a b6 00 19 12 2b b6 00 19 2a b4 00 0c b6 ...,........*.....*....+...*....
12e0 00 2c b6 00 19 12 2d b6 00 19 12 2f b6 00 19 2a b4 00 0f b6 00 2a b6 00 19 12 2e b6 00 19 2a b4 .,....-..../...*.....*........*.
1300 00 10 b6 00 2a b6 00 19 12 2e b6 00 19 2a b4 00 11 b6 00 2a b6 00 19 12 30 b6 00 19 b6 00 1a b9 ....*........*.....*....0.......
1320 00 31 02 00 57 b2 00 15 b6 00 32 99 00 1c b2 00 15 bb 00 16 59 b7 00 17 12 33 b6 00 19 2b b6 00 .1..W.....2.........Y....3...+..
1340 19 b6 00 1a b6 00 34 a7 00 17 4e 2d b6 00 35 a7 00 0f b2 00 15 12 36 b6 00 37 04 b8 00 38 b1 00 ......4...N-..5.......6..7...8..
1360 01 00 12 01 61 01 64 00 21 00 00 00 83 00 00 00 04 00 01 00 21 00 01 00 84 00 85 00 01 00 7e 00 ....a.d.!...........!.........~.
1380 00 00 2a 00 02 00 02 00 00 00 16 2a 2a b4 00 03 b6 00 39 ac 4c b2 00 15 2b b6 00 22 b6 00 23 03 ..*........**.....9.L...+.."..#.
13a0 ac 00 01 00 00 00 08 00 09 00 21 00 00 00 01 00 84 00 86 00 02 00 7e 00 00 00 1f 00 02 00 02 00 ..........!...........~.........
13c0 00 00 13 b8 00 24 b6 00 25 99 00 0b b8 00 24 2b b6 00 27 ac 03 ac 00 00 00 00 00 83 00 00 00 04 .....$..%.....$+..'.............
13e0 00 01 00 21 00 01 00 87 00 88 00 01 00 7e 00 00 00 11 00 01 00 01 00 00 00 05 2a b4 00 12 b0 00 ...!.........~............*.....
1400 00 00 00 00 01 00 89 00 8a 00 01 00 7e 00 00 00 2e 00 06 00 05 00 00 00 1a 2a 2b 2c 1d 04 03 b6 ............~............*+,....
1420 00 3a a7 00 10 3a 04 b2 00 15 19 04 b6 00 22 b6 00 23 b1 00 01 00 00 00 09 00 0c 00 21 00 00 00 .:...:........"..#..........!...
1440 01 00 89 00 8b 00 02 00 7e 00 00 02 9c 00 05 00 13 00 00 02 88 01 3a 06 01 3a 07 04 36 08 b8 00 ........~.............:..:..6...
1460 24 b6 00 25 99 02 78 b8 00 24 b6 00 3b 3a 07 01 3a 09 01 3a 0a 01 3a 0b 01 3a 0c 01 3a 0d 2c b2 $..%..x..$..;:..:..:..:..:..:.,.
1480 00 3c b9 00 3d 02 00 3a 09 2c b2 00 3e b9 00 3d 02 00 3a 0a 2c b2 00 3f b9 00 3d 02 00 3a 0b 19 .<..=..:.,..>..=..:.,..?..=..:..
14a0 09 c7 00 21 b2 00 15 bb 00 16 59 b7 00 17 b2 00 3c b6 00 40 b6 00 19 12 41 b6 00 19 b6 00 1a b6 ...!......Y.....<..@....A.......
14c0 00 37 19 0a c7 00 21 b2 00 15 bb 00 16 59 b7 00 17 b2 00 3e b6 00 40 b6 00 19 12 41 b6 00 19 b6 .7....!......Y.....>..@....A....
14e0 00 1a b6 00 37 19 0b c7 00 21 b2 00 15 bb 00 16 59 b7 00 17 b2 00 3f b6 00 40 b6 00 19 12 41 b6 ....7....!......Y.....?..@....A.
1500 00 19 b6 00 1a b6 00 37 19 07 bb 00 16 59 b7 00 17 12 42 b6 00 19 2b b6 00 19 12 43 b6 00 19 b6 .......7.....Y....B...+....C....
1520 00 1a b9 00 44 02 00 3a 06 2a 2c b6 00 45 3a 0e 19 0e 03 2e 36 0f 19 0e 04 2e 36 10 01 3a 0d 2a ....D..:.*,..E:.....6.....6..:.*
1540 2b 2a b4 00 0e b6 00 2a 2a b4 00 11 b6 00 2a 15 10 b8 00 46 b6 00 47 3a 11 19 11 b9 00 48 01 00 +*.....**.....*....F..G:.....H..
1560 99 00 16 19 11 2a b4 00 0e b6 00 2a b9 00 49 02 00 3a 0d a7 ff e6 19 0d c6 00 36 15 05 9a 00 06 .....*.....*..I..:........6.....
1580 03 36 08 b2 00 15 bb 00 16 59 b7 00 17 2c b9 00 4a 01 00 b6 00 19 12 4b b6 00 19 19 0d b6 00 19 .6.......Y...,..J......K........
15a0 12 4c b6 00 19 b6 00 1a b6 00 23 a7 00 81 01 3a 0c 2a 2b 2a b4 00 0e b6 00 2a 2a b4 00 10 b6 00 .L........#....:.*+*.....**.....
15c0 2a 15 0f b8 00 46 b6 00 47 3a 11 19 11 b9 00 48 01 00 99 00 16 19 11 2a b4 00 0e b6 00 2a b9 00 *....F..G:.....H.......*.....*..
15e0 49 02 00 3a 0c a7 ff e6 19 0c c6 00 42 15 05 9a 00 06 03 36 08 b2 00 15 bb 00 16 59 b7 00 17 12 I..:........B......6.......Y....
1600 4d b6 00 19 2c b9 00 4a 01 00 b6 00 19 12 4b b6 00 19 19 0c b6 00 19 12 4e b6 00 19 15 0f b6 00 M...,..J......K.........N.......
1620 4f 12 50 b6 00 19 b6 00 1a b6 00 23 15 08 99 00 ae 19 06 04 2c b9 00 4a 01 00 b9 00 51 03 00 19 O.P........#........,..J....Q...
1640 06 05 1d b9 00 52 03 00 19 06 06 15 0f b9 00 52 03 00 19 06 07 15 10 b9 00 52 03 00 19 06 08 19 .....R.........R.........R......
1660 09 b9 00 51 03 00 19 06 10 06 19 0a b9 00 51 03 00 19 06 10 07 19 0b b9 00 51 03 00 19 06 b9 00 ...Q..........Q..........Q......
1680 53 01 00 57 a7 00 2c 3a 12 b2 00 15 bb 00 16 59 b7 00 17 12 55 b6 00 19 2c b9 00 4a 01 00 b6 00 S..W..,:.......Y....U...,..J....
16a0 19 12 56 b6 00 19 1d b6 00 4f b6 00 1a b6 00 37 b2 00 15 b6 00 32 99 00 26 b2 00 15 bb 00 16 59 ..V......O.....7.....2..&......Y
16c0 b7 00 17 12 57 b6 00 19 2c b9 00 4a 01 00 b6 00 19 12 58 b6 00 19 b6 00 1a b6 00 34 b1 00 01 01 ....W...,..J......X........4....
16e0 dc 02 2f 02 32 00 54 00 00 00 83 00 00 00 04 00 01 00 21 00 01 00 8c 00 8d 00 01 00 7e 00 00 01 ../.2.T...........!.........~...
1700 08 00 06 00 08 00 00 00 e4 2a b6 00 59 9a 00 07 2a b6 00 5a 01 4e 01 3a 04 bb 00 5b 59 2b b7 00 .........*..Y...*..Z.N.:...[Y+..
1720 5c 4e 2d 2c b8 00 5d 3a 04 a7 00 0a 3a 05 19 05 b6 00 35 19 04 b9 00 5e 01 00 9a 00 2b b2 00 15 \N-,..]:....:.....5....^....+...
1740 bb 00 16 59 b7 00 17 2c b6 00 5f b6 00 19 12 60 b6 00 19 b6 00 1a b6 00 37 b2 00 15 12 61 b6 00 ...Y...,.._....`........7....a..
1760 37 04 b8 00 38 bb 00 62 59 2c 2c b7 00 63 3a 05 19 04 19 05 b9 00 64 02 00 36 06 15 06 9a 00 06 7...8..bY,,..c:.......d..6......
1780 a7 00 6c 19 05 b9 00 65 01 00 99 00 0f b2 00 15 12 66 b6 00 37 04 b8 00 38 b2 00 15 b6 00 32 99 ..l....e.........f..7...8.....2.
17a0 00 22 b2 00 15 bb 00 16 59 b7 00 17 12 67 b6 00 19 19 05 b9 00 4a 01 00 b6 00 19 b6 00 1a b6 00 ."......Y....g.......J..........
17c0 34 2a 2a b4 00 03 19 05 2a b4 00 0d 04 03 b6 00 3a a7 00 0e 3a 07 19 07 b6 00 35 04 b8 00 38 2a 4**.....*.......:...:.....5...8*
17e0 59 b4 00 0d 04 60 b5 00 0d a7 ff 87 b1 00 03 00 10 00 20 00 23 00 21 00 67 00 77 00 cb 00 21 00 Y....`..............#.!.g.w...!.
1800 7a 00 c8 00 cb 00 21 00 00 00 08 00 8e 00 7d 00 01 00 7e 00 00 00 36 00 02 00 00 00 00 00 2a 12 z.....!.......}...~...6.......*.
1820 68 b8 00 69 b3 00 15 b8 00 1d 12 09 b6 00 1e b3 00 3c b8 00 1d 12 05 b6 00 1e b3 00 3e b8 00 1d h..i.............<..........>...
1840 12 0b b6 00 1e b3 00 3f b1 00 00 00 00 00 00 .......?.......