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authorChristoph Helma <helma@in-silico.de>2009-12-03 17:58:35 +0100
committerChristoph Helma <helma@in-silico.de>2009-12-03 17:58:35 +0100
commit5ab277326fc9417fe8b3e97e359c2d9ba72ac088 (patch)
treedc12e5c3a44ee37e8f32e4959aad2daa6871da25
parenta27bdb78b378e119a5934c40f7356dce3ef0ef94 (diff)
content fixed
-rw-r--r--application.rb6
-rw-r--r--[-rwxr-xr-x]views/layout.haml4
-rw-r--r--views/projects.haml19
-rw-r--r--views/publications.haml760
-rw-r--r--views/services.haml21
-rw-r--r--views/software.haml49
-rw-r--r--[-rwxr-xr-x]views/style.sass7
7 files changed, 835 insertions, 31 deletions
diff --git a/application.rb b/application.rb
index 6dc8730..da07fba 100644
--- a/application.rb
+++ b/application.rb
@@ -14,6 +14,10 @@ get '/services/?' do
haml :services
end
+get '/projects/?' do
+ haml :projects
+end
+
get '/publications/?' do
haml :publications
end
@@ -31,6 +35,6 @@ get '/awards/?' do
end
get '/style.css' do
- header 'Content-Type' => 'text/css; charset=utf-8'
+ headers 'Content-Type' => 'text/css; charset=utf-8'
sass :style
end
diff --git a/views/layout.haml b/views/layout.haml
index c645be6..47c604e 100755..100644
--- a/views/layout.haml
+++ b/views/layout.haml
@@ -21,12 +21,12 @@
%a{ :href => "/software" } Software
%li{:class => ("selected" if /services/ =~ request.path )}
%a{ :href => "/services" } Services
+ %li{:class => ("selected" if /projects/ =~ request.path )}
+ %a{ :href => "/projects" } Projects
%li{:class => ("selected" if /publications/ =~ request.path )}
%a{ :href => "/publications" } Publications
%li{:class => ("selected" if /awards/ =~ request.path )}
%a{ :href => "/awards" } Awards
- %li{:class => ("selected" if /links/ =~ request.path )}
- %a{ :href => "/links" } Links
%li{:class => ("selected" if /contact/ =~ request.path )}
%a{ :href => "/contact" } Contact
diff --git a/views/projects.haml b/views/projects.haml
new file mode 100644
index 0000000..c410ebf
--- /dev/null
+++ b/views/projects.haml
@@ -0,0 +1,19 @@
+Apart from industry collaborations
+%em in silico
+toxicology participates in several EU projects
+
+%p Current projects:
+%ul
+ %li
+ %a{ :href => "http://www.opentox.org"} OpenTox
+ An open source predictive toxicology framework (scientific leader, WP1 leader)
+ %li
+ %a{ :href => "www.sens-it-iv.eu/"} Sens-it-iv
+ Novel testing strategies for in vitro assessment of allergens (bioinformatics WP leader, through University Freiburg)
+
+Finished projects:
+%ul
+ %li
+ %a{ :href => "www.scarlet-project.eu/"} Scarlet
+ Workshop on in silico methods for carcinogenicity and mutagenicity
+
diff --git a/views/publications.haml b/views/publications.haml
index ae38796..4841432 100644
--- a/views/publications.haml
+++ b/views/publications.haml
@@ -1 +1,759 @@
-under construction
+%dl
+ %dt
+ [
+ %a{ :name => "maunz09a" }
+ 1
+ ]
+ %dd
+ A.&nbsp;Maunz, C.&nbsp;Helma, and S.&nbsp;Kramer.
+ Large-scale graph mining using backbone refinement classes.
+ In
+ %em
+ Proceedings of the 15th ACM SIGKDD International Conference
+ on Knowledge Discovery and Data Mining (KDD-09)
+ , page in press, 2009.
+ [&nbsp;
+ %a{ :href => "http://www.maunz.de/ls_graph_mining_using_bbrcs.pdf" }
+ \.pdf
+ \&nbsp;]
+ %dt
+ [
+ %a{ :name => "hammann09" }
+ 2
+ ]
+ %dd
+ F.&nbsp;Hammann, H.&nbsp;Gutmann, U.&nbsp;Jecklin, A.&nbsp;Maunz, C.&nbsp;Helma, and J.&nbsp;Drewe.
+ Development of decision tree models for substrates, inhibitors and
+ inducers of P-glycoprotein.
+ %em
+ Current Drug Metabolism
+ , in press, 2009.
+ %dt
+ [
+ %a{ :name => "maunz08a" }
+ 3
+ ]
+ %dd
+ A.&nbsp;Maunz and C.&nbsp;Helma.
+ Prediction of chemical toxicity with local support vector regression
+ and activity-specific kernels.
+ %em
+ SAR QSAR Environ. Res.
+ , 19:413-431, 2008.
+ [&nbsp;
+ %a{ :href => "http://www.in-silico.de/articles/mh_tf.pdf" }
+ \.pdf
+ \&nbsp;]
+ %dt
+ [
+ %a{ :name => "maunz08b" }
+ 4
+ ]
+ %dd
+ A.&nbsp;Maunz and C.&nbsp;Helma.
+ Prediction of toxic effects of pharmaceutical agents.
+ In K.&nbsp;V. Balakin, editor,
+ %em
+ Pharmaceutical Data Mining: Approaches
+ and Applications for Drug Discovery
+ , page in press, New York, 2008. J. Wiley
+ \&amp; Sons, Inc.
+ [&nbsp;
+ %a{ :href => "http://www.in-silico.de/articles/chapter_mh.pdf" }
+ \.pdf
+ \&nbsp;]
+ %dt
+ [
+ %a{ :name => "benigni07" }
+ 5
+ ]
+ %dd
+ R.&nbsp;Benigni, T.&nbsp;I. Netzeva, E.&nbsp;Benfenati, C.&nbsp;Bossa, R.&nbsp;Franke, C.&nbsp;Helma,
+ E.&nbsp;Hulzebos, C.&nbsp;Marchant, A.&nbsp;Richard, Y.-T. Woo, and C.&nbsp;Yang.
+ The expanding role of predictive toxicology: an update on the (Q)SAR
+ models for mutagens and carcinogens.
+ %em
+ J Environ Sci Health C Environ Carcinog Ecotoxicol Rev.
+ ,
+ 25:53-97, 2007.
+ %dt
+ [
+ %a{ :name => "helma06a" }
+ 6
+ ]
+ %dd
+ C.&nbsp;Helma.
+ Lazy structure-activity relationships (
+ %tt
+ lazar
+ ) for the
+ prediction of rodent carcinogenicity and
+ %em
+ Salmonella
+ mutagenicity.
+ %em
+ Molecular Diversity
+ , 10:147-158, 2006.
+ [&nbsp;
+ %a{ :href => "http://www.in-silico.de/articles/modi020905.pdf" }
+ \.pdf
+ \&nbsp;]
+ %dt
+ [
+ %a{ :name => "helma06b" }
+ 7
+ ]
+ %dd
+ C.&nbsp;Helma and J.&nbsp;Kazius.
+ Artificial intelligence and data mining for toxicity prediction.
+ %em
+ Current Computer-Aided Drug Design
+ , 2:1-19, 2006.
+ [&nbsp;
+ %a{ :href => "http://www.in-silico.de/articles/helma_kazius_ccadd.pdf" }
+ \.pdf
+ \&nbsp;]
+ %dt
+ [
+ %a{ :name => "vracko06" }
+ 8
+ ]
+ %dd
+ M.&nbsp;Vracko, V.&nbsp;Bandelj, P.&nbsp;Barbieri, E.&nbsp;Benfenati, Q.&nbsp;Chaudhry, M.&nbsp;Cronin,
+ J.&nbsp;Devillers, A.&nbsp;Gallegos, G.&nbsp;Gini, P.&nbsp;Gramatica, C.&nbsp;Helma, D.&nbsp;Neagu,
+ T.&nbsp;Netzeva, M.&nbsp;Pavan, G.&nbsp;Patlevicz, M.&nbsp;Randic, I.&nbsp;Tsakovska, and A.&nbsp;Worth.
+ Validation of counter propagation neural network models for
+ predictive toxicology according to the OECD principles. A case study.
+ %em
+ SAR QSAR Environ. Res.
+ , 17:265-84, 2006.
+ %dt
+ [
+ %a{ :name => "helma05a" }
+ 9
+ ]
+ %dd
+ C.&nbsp;Helma.
+ %em
+ Predictive Toxicology
+ \.
+ CRC Press, Boca Raton, 2005.
+ %dt
+ [
+ %a{ :name => "helma05b" }
+ 10
+ ]
+ %dd
+ C.&nbsp;Helma.
+ %tt
+ lazar:
+ Lazy Structure - Activity Relationships for toxicity
+ prediction.
+ In C.&nbsp;Helma, editor,
+ %em
+ Predictive Toxicology
+ , pages 479-499. CRC
+ Press, Boca Raton, 2005.
+ %dt
+ [
+ %a{ :name => "helma05c" }
+ 11
+ ]
+ %dd
+ C.&nbsp;Helma.
+ %em
+ In Silico
+ predictive toxicology: The state-of-the-art and
+ strategies to predict human health effects.
+ %em
+ Current Opinions in Drug Discovery &amp; Development
+ , 8:27-31,
+ 2005.
+ [&nbsp;
+ %a{ :href => "http://www.in-silico.de/articles/helma_coddd.pdf" }
+ \.pdf
+ \&nbsp;]
+ %dt
+ [
+ %a{ :name => "helma05d" }
+ 12
+ ]
+ %dd
+ C.&nbsp;Helma.
+ A brief introduction to predictive toxicology.
+ In C.&nbsp;Helma, editor,
+ %em
+ Predictive Toxicology
+ \. CRC Press, Boca
+ Raton, 2005.
+ %dt
+ [
+ %a{ :name => "kramer05" }
+ 13
+ ]
+ %dd
+ S.&nbsp;Kramer and C.&nbsp;Helma.
+ Machine learning and data mining.
+ In C.&nbsp;Helma, editor,
+ %em
+ Predictive Toxicology
+ , pages 223-254. CRC
+ Press, Boca Raton, 2005.
+ %dt
+ [
+ %a{ :name => "helma04a" }
+ 14
+ ]
+ %dd
+ C.&nbsp;Helma, T.&nbsp;Kramer, S.&nbsp;Kramer, and L.&nbsp;DeRaedt.
+ Data Mining and Machine Learning techniques for the
+ identification of mutagenicity inducing substructures and
+ Structure-Activity Relationships of noncongeneric compounds.
+ %em
+ J. Chem. Inf. Comput. Sci.
+ , 44:1402-1411, 2004.
+ [&nbsp;
+ %a{ :href => "http://pubs3.acs.org/acs/journals/doilookup?in_doi=10.1021/ci034254q" }
+ http
+ \&nbsp;]
+ %dt
+ [
+ %a{ :name => "helma04b" }
+ 15
+ ]
+ %dd
+ C.&nbsp;Helma.
+ Data mining and knowledge discovery in predictive toxicology.
+ %em
+ SAR QSAR Environ. Res.
+ , 15:367-383, 2004.
+ %dt
+ [
+ %a{ :name => "helma03a" }
+ 16
+ ]
+ %dd
+ C.&nbsp;Helma and S.&nbsp;Kramer.
+ A survey of the Predictive Toxicology Challenge.
+ %em
+ Bioinformatics
+ , 19:1179-1182, 2003.
+ [&nbsp;
+ %a{ :href => "http://bioinformatics.oxfordjournals.org/cgi/content/abstract/19/10/1179" }
+ http
+ \&nbsp;]
+ %dt
+ [
+ %a{ :name => "helma03b" }
+ 17
+ ]
+ %dd
+ C.&nbsp;Helma, S.&nbsp;Kramer, and L.&nbsp;DeRaedt.
+ The molecular feature miner MolFea.
+ In M.&nbsp;Hicks and C.&nbsp;Kettner, editors,
+ %em
+ Proceedings of the
+ Beilstein Workshop 2002: Molecular Informatics: Confronting Complexity
+ ,
+ pages 79-93. Beilstein Institut, Frankfurt, 2003.
+ %dt
+ [
+ %a{ :name => "toivonen03" }
+ 18
+ ]
+ %dd
+ H.&nbsp;Toivonen, A.&nbsp;Srinivasan, R.&nbsp;D. King, S.&nbsp;Kramer, and C.&nbsp;Helma.
+ Statistical evaluation of the Predictive Toxicology Challenge
+ 2000-2001.
+ %em
+ Bioinformatics
+ , 19:1183-1193, 2003.
+ [&nbsp;
+ %a{ :href => "http://bioinformatics.oxfordjournals.org/cgi/content/abstract/19/10/1183" }
+ http
+ \&nbsp;]
+ %dt
+ [
+ %a{ :name => "helma02a" }
+ 19
+ ]
+ %dd
+ C.&nbsp;Helma.
+ Data mining in toxicology.
+ In J.P.V. Heuvel, W.F. Greenlee, G.H. Perdew, and W.B. Mattes,
+ editors,
+ %em
+ Comprehensive Toxicology Vol XX. Cellular and Molecular
+ Toxicology
+ , pages 611-624. Elsevier, 2002.
+ %dt
+ [
+ %a{ :name => "kassie02" }
+ 20
+ ]
+ %dd
+ F.&nbsp;Kassie, S.&nbsp;Rabot, M.&nbsp;Uhl, W.&nbsp;Huber, H.M. Qin, C.&nbsp;Helma, R.&nbsp;Schulte-Hermann,
+ and S.&nbsp;Knasm&uuml;ller.
+ Chemoprotective effects of garden cress (lepidium sativum) and its
+ constituents towards 2-amino-3-methyl-imidazo[4,5-f]quinoline (IQ)-induced
+ genotoxic effects and colonicneoplastic lesions.
+ %em
+ Carcinogenesis
+ , 23:1155-1161, 2002.
+ %dt
+ [
+ %a{ :name => "kramer02" }
+ 21
+ ]
+ %dd
+ S.&nbsp;Kramer, E.&nbsp;Frank, and C.&nbsp;Helma.
+ Fragment generation and Support Vector Machines for inducing
+ SARs.
+ %em
+ SAR and QSAR in Environmental Research
+ , 13:509-523, 2002.
+ %dt
+ [
+ %a{ :name => "gottmann01" }
+ 22
+ ]
+ %dd
+ E.&nbsp;Gottmann, S.&nbsp;Kramer, B.&nbsp;Pfahringer, and C.&nbsp;Helma.
+ Data quality in predictive toxicology: Reproducibility of rodent
+ carcinogenicity experiments.
+ %em
+ Environ. Health Perspect.
+ , 109:509-514, 2001.
+ [&nbsp;
+ %a{ :href => "http://www.ehponline.org/members/2001/109p509-514gottmann/gottmann-full.html" }
+ \.html
+ \&nbsp;]
+ %dt
+ [
+ %a{ :name => "helma01b" }
+ 23
+ ]
+ %dd
+ C.&nbsp;Helma, R.D. King, S.&nbsp;Kramer, and A.&nbsp;Srinivasan.
+ The Predictive Toxicology Challenge 2000-2001.
+ %em
+ Bioinformatics
+ , 17:107-108, 2001.
+ [&nbsp;
+ %a{ :href => "http://bioinformatics.oupjournals.org/cgi/reprint/17/1/107.pdf" }
+ \.pdf
+ \&nbsp;]
+ %dt
+ [
+ %a{ :name => "kramer01e" }
+ 24
+ ]
+ %dd
+ S.&nbsp;Kramer, L.&nbsp;De&nbsp;Raedt, and C.&nbsp;Helma.
+ Molecular feature mining in HIV data.
+ In
+ %em
+ Proceedings of the Seventh ACM SIGKDD International
+ Conference on Knowledge Discovery and Data Mining (KDD-01)
+ , pages 136-143,
+ 2001.
+ %dt
+ [
+ %a{ :name => "helma00a" }
+ 25
+ ]
+ %dd
+ C.&nbsp;Helma, S.&nbsp;Kramer, B.&nbsp;Pfahringer, and E.&nbsp;Gottmann.
+ Data quality in predictive toxicology: Identification of chemical
+ structures and calculation of chemical properties.
+ %em
+ Environ. Health Perspect.
+ , 108:1029-1033, 2000.
+ [&nbsp;
+ %a{ :href => "http://ehpnet1.niehs.nih.gov/docs/2000/108p1029-1033helma/abstract.html" }
+ \.html
+ \&nbsp;]
+ %dt
+ [
+ %a{ :name => "helma00b" }
+ 26
+ ]
+ %dd
+ C.&nbsp;Helma, E.&nbsp;Gottmann, and S.&nbsp;Kramer.
+ Knowledge discovery and data mining in toxicology.
+ %em
+ Stat Methods Med Res.
+ , 9:329-358, 2000.
+ [&nbsp;
+ %a{ :href => "http://www.in-silico.de/articles/smmr.pdf" }
+ \.pdf
+ \&nbsp;]
+ %dt
+ [
+ %a{ :name => "helma00c" }
+ 27
+ ]
+ %dd
+ C.&nbsp;Helma, S.&nbsp;Kramer, and B.&nbsp;Pfahringer.
+ Carcinogenicity prediction for noncongeneric compounds: Experiments
+ with the Machine Learning Program SRT and various sets of chemical
+ descriptors.
+ In
+ %em
+ Molecular Modelling and Prediction of Bioactivity
+ , page 464,
+ 2000.
+ %dt
+ [
+ %a{ :name => "helma00d" }
+ 28
+ ]
+ %dd
+ C.&nbsp;Helma and M.&nbsp;Uhl.
+ A public domain image analysis program for the single cell gel
+ electrophoresis (comet) assay.
+ %em
+ Mutation Res.
+ , 466:9-15, 2000.
+ [&nbsp;
+ %a{ :href => "http://www.in-silico.de/articles/comet.pdf" }
+ \.pdf
+ \&nbsp;]
+ %dt
+ [
+ %a{ :name => "helma00e" }
+ 29
+ ]
+ %dd
+ C.&nbsp;Helma, E.&nbsp;Gottmann, S.&nbsp;Kramer, and B.&nbsp;Pfahringer.
+ The application of machine learning algorithms to detect chemical
+ properties responsible for carcinogenicity.
+ In K.&nbsp;Gundertofte and F.S. Jorgensen, editors,
+ %em
+ Molecular
+ Modeling and Prediction of Bioactivity
+ , pages 464-466, New York, 2000.
+ Kluwer Academic/Plenum Publishers.
+ %dt
+ [
+ %a{ :name => "helma00f" }
+ 30
+ ]
+ %dd
+ C.&nbsp;Helma, E.&nbsp;Gottmann, S.&nbsp;Kramer, and B.&nbsp;Pfahringer.
+ Artificial Intelligence Methoden zur Vorhersage der
+ Kanzerogenit&auml;t organischer Verbindungen.
+ In H.&nbsp;Sch&ouml;ffl, H.&nbsp;Spielmann, and H.A. Tritthart, editors,
+ %em
+ Ersatz- und Erg&auml;nzungsmethoden zu Tierversuchen: Forschung ohne
+ Tierversuche
+ , pages 128-134, Wien-New York, 2000. Springer Verlag.
+ %dt
+ [
+ %a{ :name => "uhl00" }
+ 31
+ ]
+ %dd
+ M.&nbsp;Uhl, C.&nbsp;Helma, and S.&nbsp;Knasm&uuml;ller.
+ Evaluation of the single cell gel electrophoretic assay with human
+ hepatoma (HepG2) cells.
+ %em
+ Mutation Res.
+ , 468:213-225, 2000.
+ %dt
+ [
+ %a{ :name => "helma99a" }
+ 32
+ ]
+ %dd
+ C.&nbsp;Helma, E.&nbsp;Gottmann, S.&nbsp;Kramer, and B.&nbsp;Pfahringer.
+ Data quality issues in toxicological knowledge discovery.
+ In
+ %em
+ Predictive Toxicology of Chemicals: Experiences and Impact of
+ AI Tools
+ , pages 8-11, Menlo Park, California, 1999. AAAI Press.
+ %dt
+ [
+ %a{ :name => "pfahringer99" }
+ 33
+ ]
+ %dd
+ B.&nbsp;Pfahringer, E.&nbsp;Gottmann, C.&nbsp;Helma, and S.&nbsp;Kramer.
+ Efficiency/representational issues in toxicological knowledge
+ discovery.
+ In
+ %em
+ Predictive Toxicology of Chemicals: Experiences and Impact of
+ AI Tools
+ , pages 86-89, Menlo Park, California, 1999. AAAI Press.
+ %dt
+ [
+ %a{ :name => "uhl99" }
+ 34
+ ]
+ %dd
+ M.&nbsp;Uhl, C.&nbsp;Helma, and S.&nbsp;Knasm&uuml;ller.
+ Single-cell gel electrophoresis assays with human-derived hepatoma
+ (HepG2) cells.
+ %em
+ Mutation Res.
+ , 441:215-224, 1999.
+ %dt
+ [
+ %a{ :name => "helma98a" }
+ 35
+ ]
+ %dd
+ C.&nbsp;Helma, E.&nbsp;Gottmann, S.&nbsp;Kramer, and B.&nbsp;Pfahringer.
+ The application of machine learning algorithms to detect chemical
+ properties responsible for carcinogenicity.
+ In
+ %em
+ Molecular Modelling and Prediction of Bioactivity.
+ Proceedings of the 12th European Symposium on Quantitative Structure-Activity
+ Relationships
+ , 1998.
+ %dt
+ [
+ %a{ :name => "helma98b" }
+ 36
+ ]
+ %dd
+ C.&nbsp;Helma, P.&nbsp;Eckl, E.&nbsp;Gottmann, F.&nbsp;Kassie, W.&nbsp;Rodinger, H.&nbsp;Steinkellner,
+ C.&nbsp;Windpassinger, R.&nbsp;Schulte-Hermann, and S.&nbsp;Knasm&uuml;ller.
+ Genotoxic and ecotoxic effects of groundwaters and their relation to
+ routinely measured chemical parameters.
+ %em
+ Environ. Sci. Technol.
+ , 32:1799-1805, 1998.
+ %dt
+ [
+ %a{ :name => "knasmueller98" }
+ 37
+ ]
+ %dd
+ S.&nbsp;Knasm&uuml;ller, C.&nbsp;Helma, P.&nbsp;Eckl, E.&nbsp;Gottmann, H.&nbsp;Steinkellner, F.&nbsp;Kassie,
+ T.&nbsp;Haider, W.&nbsp;Parzefall, and R.&nbsp;Schulte-Hermann.
+ Investigations on genotoxic effects of groundwater from the
+ Mitterndorfer Senke from the vicinity of Wiener Neustadt.
+ %em
+ Wiener Klinische Wochenschrift
+ , 110:824-833, 1998.
+ %dt
+ [
+ %a{ :name => "kramer98" }
+ 38
+ ]
+ %dd
+ S.&nbsp;Kramer, B.&nbsp;Pfahringer, and C.&nbsp;Helma.
+ Stochastic propositionalization of non-determinate background
+ knowledge.
+ In
+ %em
+ Proceedings of the 8th International Workshop on Inductive
+ Logic Programming (ILP-98)
+ , pages 80-94, Berlin Heidelberg New York, 1998.
+ Springer.
+ %dt
+ [
+ %a{ :name => "steinkellner98" }
+ 39
+ ]
+ %dd
+ H.&nbsp;Steinkellner, M.S. Kong, C.&nbsp;Helma, S.&nbsp;Ecker, T.H. Ma, O.&nbsp;Horak, M.&nbsp;Kundi,
+ and S.&nbsp;Knasm&uuml;ller.
+ Genotoxic effects of heavy metals: Comparative investigation with
+ plant bioassays.
+ %em
+ Environ. Mol. Mutagen.
+ , 31:183-191, 1998.
+ %dt
+ [
+ %a{ :name => "helma97a" }
+ 40
+ ]
+ %dd
+ C.&nbsp;Helma and S.&nbsp;Knasm&uuml;ller.
+ Die Belastung von Gew&auml;ssern mit gentoxischen Substanzen
+ IIa: Die Quellen gentoxischer Kontaminationen (Industrielle
+ Emissionen).
+ %em
+ UWSF-Z.Umweltchem.&Ouml;kotox.
+ , 9:41-48, 1997.
+ %dt
+ [
+ %a{ :name => "helma97b" }
+ 41
+ ]
+ %dd
+ C.&nbsp;Helma and S.&nbsp;Knasm&uuml;ller.
+ Die Belastung von Gew&auml;ssern mit gentoxischen Substanzen
+ IIb: Die Quellen gentoxischer Kontaminationen (Nichtindustrielle
+ Emissionen).
+ %em
+ UWSF-Z.Umweltchem.&Ouml;kotox.
+ , 9:163-168, 1997.
+ %dt
+ [
+ %a{ :name => "helma97c" }
+ 42
+ ]
+ %dd
+ C.&nbsp;Helma.
+ Die Situation der Chlorchemie in &Ouml;stereich: Chlorh&auml;ltige
+ Pflanzenschutz- Holzschutz und Wasserdesinfektionsmittel - Entwicklungen im
+ Zeitraum 1993 bis 1997.
+ Technical report, Gesellschaft &Ouml;sterreichischer Chemiker, 1997.
+ %dt
+ [
+ %a{ :name => "knasmueller97" }
+ 43
+ ]
+ %dd
+ S.&nbsp;Knasm&uuml;ller, W.&nbsp;Parzefall, C.&nbsp;Helma, F.&nbsp;Kassie, S.&nbsp;Ecker, and
+ R.&nbsp;Schulte-Hermann.
+ Toxic effects of griseofulvin: Disease models, mechanisms, and risk
+ assessment.
+ %em
+ Critical Reviews in Toxicology
+ , 27:495-537, 1997.
+ %dt
+ [
+ %a{ :name => "kramer97a" }
+ 44
+ ]
+ %dd
+ S.&nbsp;Kramer, B.&nbsp;Pfahringer, and C.&nbsp;Helma.
+ Mining for causes of cancer: Machine learning experiments at various
+ levels of detail.
+ In
+ %em
+ Proceedings of the Third International Conference on
+ Knowledge Discovery and Data Mining (KDD-97)
+ , Menlo Park, CA, 1997. AAAI
+ Press.
+ %dt
+ [
+ %a{ :name => "helma96a" }
+ 45
+ ]
+ %dd
+ C.&nbsp;Helma, V.&nbsp;Mersch-Sundermann, V.S. Houk, U.&nbsp;Glasbrenner, C.&nbsp;Klein,
+ L.&nbsp;Wenquing, K.&nbsp;Fekadu, R.&nbsp;Schulte-Hermann, and S.&nbsp;Knasm&uuml;ller.
+ Comparative evaluation of four bacterial assays for the detection of
+ genotoxic effects in water samples.
+ %em
+ Environ. Sci. Technol.
+ , 30:897-907, 1996.
+ %dt
+ [
+ %a{ :name => "helma95" }
+ 46
+ ]
+ %dd
+ C.&nbsp;Helma, L.&nbsp;Kronberg, T.H. Ma, and S.&nbsp;Knasm&uuml;ller.
+ Genotoxic effects of the chlorinated hydroxyfuranones
+ 3-chloro-4-(dichloromethyl)-5-hydroxy-2[5H]-furanone and
+ 3,4-dichloro-5-hydroxy-2[5H]-furanone in
+ %i
+ Tradescantia
+ micronucleus assays.
+ %em
+ Mutation Res.
+ , 346:181-186, 1995.
+ %dt
+ [
+ %a{ :name => "helma95b" }
+ 47
+ ]
+ %dd
+ C.&nbsp;Helma.
+ Erfahrungen mit dem Einsatz biologischer Mutationstests zur
+ Verfahrensoptimierung und Umweltkontrolle.
+ In
+ %em
+ Handbuch der Umwelttechnik 1995
+ , pages 266-267. Wien, 1995.
+ %dt
+ [
+ %a{ :name => "helma95c" }
+ 48
+ ]
+ %dd
+ C.&nbsp;Helma.
+ Detection of genotoxic contaminations in water.
+ In M.&nbsp;Guminska and J.&nbsp;Miedzobrodzki, editors,
+ %em
+ Molecular Biology
+ for Environment and Man
+ , pages 99-111. 1995.
+ %dt
+ [
+ %a{ :name => "helma94a" }
+ 49
+ ]
+ %dd
+ C.&nbsp;Helma, R.&nbsp;Sommer, R.&nbsp;Schulte-Hermann, and S.&nbsp;Knasm&uuml;ller.
+ Enhanced clastogenicity of contaminated ground water following UV
+ irradiation detected by the
+ %em
+ Tradescantia
+ micronucleus assay.
+ %em
+ Mutation Res.
+ , 323:93-98, 1994.
+ %dt
+ [
+ %a{ :name => "helma94b" }
+ 50
+ ]
+ %dd
+ C.&nbsp;Helma, S.&nbsp;Knasm&uuml;ller, and R.&nbsp;Schulte-Hermann.
+ Die Belastung von W&auml;ssern mit gentoxischen Substanzen I. Methoden
+ zur Pr&uuml;fung der Gentoxizit&auml;t.
+ %em
+ UWSF-Z.Umweltchem.&Ouml;kotox.
+ , 6:277-288, 1994.
+ %dt
+ [
+ %a{ :name => "helma94c" }
+ 51
+ ]
+ %dd
+ C.&nbsp;Helma, S.&nbsp;Knasm&uuml;ller, and R.&nbsp;Schulte-Hermann.
+ Biologische Tests zur Pr&uuml;fung der Gentoxizit&auml;t:
+ Einsatzm&ouml;glichkeiten zur Verfahrensoptimierung und Emissionskontrolle.
+ In Brandl et&nbsp;al., editor,
+ %em
+ Ecoinforma 94. Bd 9, Kanzerogenese
+ durch Umweltchemikalien
+ , pages 497-512. Wien, 1994.
+ %dt
+ [
+ %a{ :name => "fassold93" }
+ 52
+ ]
+ %dd
+ E.&nbsp;Fassold, C.&nbsp;Helma, S.&nbsp;Knasm&uuml;ller, and R.&nbsp;Sattelberger.
+ Die Situation der Chlorchemie in &Ouml;stereich, 8. Teil:
+ Chlorh&auml;ltige Pflanzenschutz- Holzschutz und Wasserdesinfektionsmittel.
+ Technical report, Gesellschaft &Ouml;sterreichischer Chemiker, 1993.
+ %dt
+ [
+ %a{ :name => "helma92" }
+ 53
+ ]
+ %dd
+ C.&nbsp;Helma et.al.
+ Abfallarme Gro&szlig;k&uuml;che.
+ Technical report, &Ouml;sterreichisches &Ouml;kologie Institut, 1992.
+ %dt
+ [
+ %a{ :name => "helma91" }
+ 54
+ ]
+ %dd
+ C.&nbsp;Helma et.al.
+ Ausstieg aus der M&uuml;llverbrennung.
+ Technical report, &Ouml;sterreichisches &Ouml;kologie Institut, 1991.
diff --git a/views/services.haml b/views/services.haml
index 768022b..f2c73e7 100644
--- a/views/services.haml
+++ b/views/services.haml
@@ -1,21 +1,28 @@
%ul
%li
- Local installation of the
+ Local installation of
%code lazar
- system
+ and
+ %a{:href => "http://www.opentox.org"} OpenTox
+ systems
%li
- Support for local
- %code lazar
+ Commercial support for local
installations
%li
- Development of new prediction modules
+ Development of prediction modules for new endpoints
%li
- Inclusion of in-house data into prediction modules
+ Inclusion of confidential in-house data into
+ %code lazar
+ and
+ %a{:href => "http://www.opentox.org"} OpenTox
+ systems
%li
- Batch predictions via file upload
+ Batch predictions for large datasets
%li
Costumer oriented
%code lazar
+ and
+ %a{:href => "http://www.opentox.org"} OpenTox
implementations (e.g.
consideration of background knowledge, inclusion of biological
data, optimisation for high throughput screening)
diff --git a/views/software.haml b/views/software.haml
index f51982e..688d47a 100644
--- a/views/software.haml
+++ b/views/software.haml
@@ -1,21 +1,34 @@
%em in silico
-toxicology develops the
-%code
- %a{ :href => "http://www.predictive-toxicology.org/lazar/" } lazar
-(
-%em Lazy Structure- Activity Relationships
-) program for the prediction of toxic activities.
-%p
- %code lazar
- can be used from a free
- %a{ :href => "http://lazar.in-silico.ch/" } webinterface
- or by compiling the
- %a{ :href => "http://github.com/helma/lazar-core/" } source code
- (
- %a{ :href => "http://www.gnu.org/copyleft/gpl.html" } GNU License
- ) for a local installation.
+toxicology develops
+%a{:href => "http://en.wikipedia.org/wiki/Open_source_software"} open source
+software:
+
+%ul
+ %li
+ Webservices and applications for the
+ %a{:href => "http://www.opentox.org"} OpenTox
+ framework
+ %li
+ The
+ %code
+ %a{ :href => "http://www.in-silico.de/lazar/" } lazar
+ (
+ %em Lazy Structure- Activity Relationships
+ ) program for the prediction of toxic activities and webservices.
+ %code lazar
+ can be used from a free
+ %a{ :href => "http://lazar.in-silico.de/" } webinterface
+ or by compiling the
+ %a{ :href => "http://github.com/helma/lazar-core/" } source code
+ (
+ %a{ :href => "http://www.gnu.org/copyleft/gpl.html" } GNU License
+ ) for a local installation.
+%p
+Please visit our
+%a{ :href => "http://github.com/helma"} GitHub repository
+to view and download the source code of our projects.
%p
- We offer also
- %a{ :href => '/services' } commercial services
- for in-house installations, custom developments, consulting and support.
+We offer also
+%a{ :href => '/services' } commercial services
+for in-house installations, custom developments, consulting and support.
diff --git a/views/style.sass b/views/style.sass
index d3de5b8..1f9cc5b 100755..100644
--- a/views/style.sass
+++ b/views/style.sass
@@ -29,8 +29,11 @@ body
.content
background-color: white
padding: 0.5em
-
-
+
+ dt
+ padding-right: 0.5em
+ float: left
+ clear: left
.footer
background-color: rgb(128,128,255)