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diff --git a/views/publications.haml b/views/publications.haml index a04aec1..adf8a70 100644 --- a/views/publications.haml +++ b/views/publications.haml @@ -1,768 +1,2 @@ -!!! -%html - %head - %title helma - %body - / - This document was automatically generated with bibtex2html 1.96 - (see http://www.lri.fr/~filliatr/bibtex2html/), - with the following command: - bibtex2html -r -d -dl -nobibsource -nofooter helma.bib - %dl - %dt - [ - %a{:name => "suenderhof10"}> 1 - ] - %dd - Claudia Suenderhauf, Felix Hammann, Andreas Maunz, Christoph Helma, and Jorg - Huwyler. - Combinatorial qsar modeling of human intestinal absorption. - = succeed "," do - %em Molecular Pharmaceutics - 8(1):213-224, 2011. - [ - %a{:href => "http://dx.doi.org/10.1021/mp100279d"}> DOI - | - = succeed " |" do - %a{:href => "http://arxiv.org/abs/http://pubs.acs.org/doi/pdf/10.1021/mp100279d"} arXiv - = succeed " ]" do - %a{:href => "http://pubs.acs.org/doi/abs/10.1021/mp100279d"} http - %dt - [ - %a{:name => "maunz10a"}> 2 - ] - %dd - Andreas Maunz, Christoph Helma, and Stefan Kramer. - Efficient mining for structurally diverse subgraph patterns in large - molecular databases. - = succeed "," do - %em Machine Learning - pages 1-26, 2010. - [ - %a{:href => "http://dx.doi.org/10.1007/s10994-010-5187-6"}> http - \ ] - %dt - [ - %a{:name => "hardy10"}> 3 - ] - %dd - Barry Hardy, Nicki Douglas, Christoph Helma, Micha Rautenberg, Nina Jeliazkova, - Vedrin Jeliazkov, Ivelina Nikolova, Romualdo Benigni, Olga Tcheremenskaia, - Stefan Kramer, Tobias Girschick, Fabian Buchwald, Joerg Wicker, Andreas - Karwath, Martin Gutlein, Andreas Maunz, Haralambos Sarimveis, Georgia - Melagraki, Antreas Afantitis, Pantelis Sopasakis, David Gallagher, Vladimir - Poroikov, Dmitry Filimonov, Alexey Zakharov, Alexey Lagunin, Tatyana - Gloriozova, Sergey Novikov, Natalia Skvortsova, Dmitry Druzhilovsky, Sunil - Chawla, Indira Ghosh, Surajit Ray, Hitesh Patel, and Sylvia Escher. - Collaborative development of predictive toxicology applications. - = succeed "," do - %em Journal of Cheminformatics - 2:7, 2010. - [ - %a{:href => "http://www.jcheminf.com/content/2/1/7"}> http - \ ] - %dt - [ - %a{:name => "maunz08b"}> 4 - ] - %dd - A. Maunz and C. Helma. - Prediction of toxic effects of pharmaceutical agents. - In K. V. Balakin, editor, - = succeed "," do - %em - Pharmaceutical Data Mining: Approaches - and Applications for Drug Discovery - New York, 2009. J. Wiley & Sons, Inc. - [ - %a{:href => "http://www.in-silico.de/articles/chapter_mh.pdf"}> .pdf - \ ] - %dt - [ - %a{:name => "maunz09a"}> 5 - ] - %dd - A. Maunz, C. Helma, and S. Kramer. - Large-scale graph mining using backbone refinement classes. - In - = succeed "," do - %em - Proceedings of the 15th ACM SIGKDD International Conference - on Knowledge Discovery and Data Mining (KDD-09) - page in press, 2009. - [ - %a{:href => "http://www.maunz.de/ls_graph_mining_using_bbrcs.pdf"}> .pdf - \ ] - %dt - [ - %a{:name => "hammann09a"}> 6 - ] - %dd - F. Hammann, H. Gutmann, U. Jecklin, A. Maunz, C. Helma, and J. Drewe. - Development of decision tree models for substrates, inhibitors and - inducers of P-glycoprotein. - = succeed "," do - %em Current Drug Metabolism - 10:339-46, 2009. - %dt - [ - %a{:name => "hammann09b"}> 7 - ] - %dd - Felix Hammann, Heike Gutmann, Ulli Baumann, Christoph Helma, and Juergen Drewe. - Classification of cytochrome p(450) activities using machine learning - methods. - = succeed "," do - %em Molecular pharmaceutics - 6:1920-6, 2009. - %dt - [ - %a{:name => "maunz08a"}> 8 - ] - %dd - A. Maunz and C. Helma. - Prediction of chemical toxicity with local support vector regression - and activity-specific kernels. - = succeed "," do - %em SAR QSAR Environ. Res. - 19:413-431, 2008. - [ - %a{:href => "http://www.in-silico.de/articles/mh_tf.pdf"}> .pdf - \ ] - %dt - [ - %a{:name => "benigni07"}> 9 - ] - %dd - R. Benigni, T. I. Netzeva, E. Benfenati, C. Bossa, R. Franke, C. Helma, - E. Hulzebos, C. Marchant, A. Richard, Y.-T. Woo, and C. Yang. - The expanding role of predictive toxicology: an update on the (Q)SAR - models for mutagens and carcinogens. - = succeed "," do - %em J Environ Sci Health C Environ Carcinog Ecotoxicol Rev. - 25:53-97, 2007. - %dt - [ - %a{:name => "helma06a"}> 10 - ] - %dd - C. Helma. - Lazy structure-activity relationships ( - %tt> lazar - ) for the - prediction of rodent carcinogenicity and - %em Salmonella - mutagenicity. - = succeed "," do - %em Molecular Diversity - 10:147-158, 2006. - [ - %a{:href => "http://www.in-silico.de/articles/modi020905.pdf"}> .pdf - \ ] - %dt - [ - %a{:name => "helma06b"}> 11 - ] - %dd - C. Helma and J. Kazius. - Artificial intelligence and data mining for toxicity prediction. - = succeed "," do - %em Current Computer-Aided Drug Design - 2:1-19, 2006. - [ - %a{:href => "http://www.in-silico.de/articles/helma_kazius_ccadd.pdf"}> .pdf - \ ] - %dt - [ - %a{:name => "vracko06"}> 12 - ] - %dd - M. Vracko, V. Bandelj, P. Barbieri, E. Benfenati, Q. Chaudhry, M. Cronin, - J. Devillers, A. Gallegos, G. Gini, P. Gramatica, C. Helma, D. Neagu, - T. Netzeva, M. Pavan, G. Patlevicz, M. Randic, I. Tsakovska, and A. Worth. - Validation of counter propagation neural network models for - predictive toxicology according to the OECD principles. A case study. - = succeed "," do - %em SAR QSAR Environ. Res. - 17:265-84, 2006. - %dt - [ - %a{:name => "helma05a"}> 13 - ] - %dd - C. Helma. - = succeed "." do - %em Predictive Toxicology - CRC Press, Boca Raton, 2005. - %dt - [ - %a{:name => "helma05b"}> 14 - ] - %dd - C. Helma. - %tt lazar: - Lazy Structure - Activity Relationships for toxicity - prediction. - In C. Helma, editor, - = succeed "," do - %em Predictive Toxicology - pages 479-499. CRC - Press, Boca Raton, 2005. - %dt - [ - %a{:name => "helma05c"}> 15 - ] - %dd - C. Helma. - %em In Silico - predictive toxicology: The state-of-the-art and - strategies to predict human health effects. - = succeed "," do - %em Current Opinions in Drug Discovery & Development - 8:27-31, - 2005. - [ - %a{:href => "http://www.in-silico.de/articles/helma_coddd.pdf"}> .pdf - \ ] - %dt - [ - %a{:name => "helma05d"}> 16 - ] - %dd - C. Helma. - A brief introduction to predictive toxicology. - In C. Helma, editor, - = succeed "." do - %em Predictive Toxicology - CRC Press, Boca - Raton, 2005. - %dt - [ - %a{:name => "kramer05"}> 17 - ] - %dd - S. Kramer and C. Helma. - Machine learning and data mining. - In C. Helma, editor, - = succeed "," do - %em Predictive Toxicology - pages 223-254. CRC - Press, Boca Raton, 2005. - %dt - [ - %a{:name => "helma04a"}> 18 - ] - %dd - C. Helma, T. Kramer, S. Kramer, and L. DeRaedt. - Data Mining and Machine Learning techniques for the - identification of mutagenicity inducing substructures and - Structure-Activity Relationships of noncongeneric compounds. - = succeed "," do - %em J. Chem. Inf. Comput. Sci. - 44:1402-1411, 2004. - [ - %a{:href => "http://pubs3.acs.org/acs/journals/doilookup?in_doi=10.1021/ci034254q"}> http - \ ] - %dt - [ - %a{:name => "helma04b"}> 19 - ] - %dd - C. Helma. - Data mining and knowledge discovery in predictive toxicology. - = succeed "," do - %em SAR QSAR Environ. Res. - 15:367-383, 2004. - %dt - [ - %a{:name => "helma03a"}> 20 - ] - %dd - C. Helma and S. Kramer. - A survey of the Predictive Toxicology Challenge. - = succeed "," do - %em Bioinformatics - 19:1179-1182, 2003. - [ - %a{:href => "http://bioinformatics.oxfordjournals.org/cgi/content/abstract/19/10/1179"}> http - \ ] - %dt - [ - %a{:name => "helma03b"}> 21 - ] - %dd - C. Helma, S. Kramer, and L. DeRaedt. - The molecular feature miner MolFea. - In M. Hicks and C. Kettner, editors, - = succeed "," do - %em - Proceedings of the - Beilstein Workshop 2002: Molecular Informatics: Confronting Complexity - pages 79-93. Beilstein Institut, Frankfurt, 2003. - %dt - [ - %a{:name => "toivonen03"}> 22 - ] - %dd - H. Toivonen, A. Srinivasan, R. D. King, S. Kramer, and C. Helma. - Statistical evaluation of the Predictive Toxicology Challenge - 2000-2001. - = succeed "," do - %em Bioinformatics - 19:1183-1193, 2003. - [ - %a{:href => "http://bioinformatics.oxfordjournals.org/cgi/content/abstract/19/10/1183"}> http - \ ] - %dt - [ - %a{:name => "helma02a"}> 23 - ] - %dd - C. Helma. - Data mining in toxicology. - In J.P.V. Heuvel, W.F. Greenlee, G.H. Perdew, and W.B. Mattes, - editors, - = succeed "," do - %em - Comprehensive Toxicology Vol XX. Cellular and Molecular - Toxicology - pages 611-624. Elsevier, 2002. - %dt - [ - %a{:name => "kassie02"}> 24 - ] - %dd - F. Kassie, S. Rabot, M. Uhl, W. Huber, H.M. Qin, C. Helma, R. Schulte-Hermann, - and S. Knasmüller. - Chemoprotective effects of garden cress (lepidium sativum) and its - constituents towards 2-amino-3-methyl-imidazo[4,5-f]quinoline (IQ)-induced - genotoxic effects and colonicneoplastic lesions. - = succeed "," do - %em Carcinogenesis - 23:1155-1161, 2002. - %dt - [ - %a{:name => "kramer02"}> 25 - ] - %dd - S. Kramer, E. Frank, and C. Helma. - Fragment generation and Support Vector Machines for inducing - SARs. - = succeed "," do - %em SAR and QSAR in Environmental Research - 13:509-523, 2002. - %dt - [ - %a{:name => "gottmann01"}> 26 - ] - %dd - E. Gottmann, S. Kramer, B. Pfahringer, and C. Helma. - Data quality in predictive toxicology: Reproducibility of rodent - carcinogenicity experiments. - = succeed "," do - %em Environ. Health Perspect. - 109:509-514, 2001. - [ - %a{:href => "http://www.ehponline.org/members/2001/109p509-514gottmann/gottmann-full.html"}> .html - \ ] - %dt - [ - %a{:name => "helma01b"}> 27 - ] - %dd - C. Helma, R.D. King, S. Kramer, and A. Srinivasan. - The Predictive Toxicology Challenge 2000-2001. - = succeed "," do - %em Bioinformatics - 17:107-108, 2001. - [ - %a{:href => "http://bioinformatics.oupjournals.org/cgi/reprint/17/1/107.pdf"}> .pdf - \ ] - %dt - [ - %a{:name => "kramer01e"}> 28 - ] - %dd - S. Kramer, L. De Raedt, and C. Helma. - Molecular feature mining in HIV data. - In - = succeed "," do - %em - Proceedings of the Seventh ACM SIGKDD International - Conference on Knowledge Discovery and Data Mining (KDD-01) - pages 136-143, - 2001. - %dt - [ - %a{:name => "helma00a"}> 29 - ] - %dd - C. Helma, S. Kramer, B. Pfahringer, and E. Gottmann. - Data quality in predictive toxicology: Identification of chemical - structures and calculation of chemical properties. - = succeed "," do - %em Environ. Health Perspect. - 108:1029-1033, 2000. - [ - %a{:href => "http://ehpnet1.niehs.nih.gov/docs/2000/108p1029-1033helma/abstract.html"}> .html - \ ] - %dt - [ - %a{:name => "helma00b"}> 30 - ] - %dd - C. Helma, E. Gottmann, and S. Kramer. - Knowledge discovery and data mining in toxicology. - = succeed "," do - %em Stat Methods Med Res. - 9:329-358, 2000. - [ - %a{:href => "http://www.in-silico.de/articles/smmr.pdf"}> .pdf - \ ] - %dt - [ - %a{:name => "helma00c"}> 31 - ] - %dd - C. Helma, S. Kramer, and B. Pfahringer. - Carcinogenicity prediction for noncongeneric compounds: Experiments - with the Machine Learning Program SRT and various sets of chemical - descriptors. - In - = succeed "," do - %em Molecular Modelling and Prediction of Bioactivity - page 464, - 2000. - %dt - [ - %a{:name => "helma00d"}> 32 - ] - %dd - C. Helma and M. Uhl. - A public domain image analysis program for the single cell gel - electrophoresis (comet) assay. - = succeed "," do - %em Mutation Res. - 466:9-15, 2000. - [ - %a{:href => "http://www.in-silico.de/articles/comet.pdf"}> .pdf - \ ] - %dt - [ - %a{:name => "helma00e"}> 33 - ] - %dd - C. Helma, E. Gottmann, S. Kramer, and B. Pfahringer. - The application of machine learning algorithms to detect chemical - properties responsible for carcinogenicity. - In K. Gundertofte and F.S. Jorgensen, editors, - = succeed "," do - %em - Molecular - Modeling and Prediction of Bioactivity - pages 464-466, New York, 2000. - Kluwer Academic/Plenum Publishers. - %dt - [ - %a{:name => "helma00f"}> 34 - ] - %dd - C. Helma, E. Gottmann, S. Kramer, and B. Pfahringer. - Artificial Intelligence Methoden zur Vorhersage der - Kanzerogenität organischer Verbindungen. - In H. Schöffl, H. Spielmann, and H.A. Tritthart, editors, - = succeed "," do - %em - Ersatz- und Ergänzungsmethoden zu Tierversuchen: Forschung ohne - Tierversuche - pages 128-134, Wien-New York, 2000. Springer Verlag. - %dt - [ - %a{:name => "uhl00"}> 35 - ] - %dd - M. Uhl, C. Helma, and S. Knasmüller. - Evaluation of the single cell gel electrophoretic assay with human - hepatoma (HepG2) cells. - = succeed "," do - %em Mutation Res. - 468:213-225, 2000. - %dt - [ - %a{:name => "helma99a"}> 36 - ] - %dd - C. Helma, E. Gottmann, S. Kramer, and B. Pfahringer. - Data quality issues in toxicological knowledge discovery. - In - = succeed "," do - %em - Predictive Toxicology of Chemicals: Experiences and Impact of - AI Tools - pages 8-11, Menlo Park, California, 1999. AAAI Press. - %dt - [ - %a{:name => "pfahringer99"}> 37 - ] - %dd - B. Pfahringer, E. Gottmann, C. Helma, and S. Kramer. - Efficiency/representational issues in toxicological knowledge - discovery. - In - = succeed "," do - %em - Predictive Toxicology of Chemicals: Experiences and Impact of - AI Tools - pages 86-89, Menlo Park, California, 1999. AAAI Press. - %dt - [ - %a{:name => "uhl99"}> 38 - ] - %dd - M. Uhl, C. Helma, and S. Knasmüller. - Single-cell gel electrophoresis assays with human-derived hepatoma - (HepG2) cells. - = succeed "," do - %em Mutation Res. - 441:215-224, 1999. - %dt - [ - %a{:name => "helma98a"}> 39 - ] - %dd - C. Helma, E. Gottmann, S. Kramer, and B. Pfahringer. - The application of machine learning algorithms to detect chemical - properties responsible for carcinogenicity. - In - = succeed "," do - %em - Molecular Modelling and Prediction of Bioactivity. - Proceedings of the 12th European Symposium on Quantitative Structure-Activity - Relationships - 1998. - %dt - [ - %a{:name => "helma98b"}> 40 - ] - %dd - C. Helma, P. Eckl, E. Gottmann, F. Kassie, W. Rodinger, H. Steinkellner, - C. Windpassinger, R. Schulte-Hermann, and S. Knasmüller. - Genotoxic and ecotoxic effects of groundwaters and their relation to - routinely measured chemical parameters. - = succeed "," do - %em Environ. Sci. Technol. - 32:1799-1805, 1998. - %dt - [ - %a{:name => "knasmueller98"}> 41 - ] - %dd - S. Knasmüller, C. Helma, P. Eckl, E. Gottmann, H. Steinkellner, F. Kassie, - T. Haider, W. Parzefall, and R. Schulte-Hermann. - Investigations on genotoxic effects of groundwater from the - Mitterndorfer Senke from the vicinity of Wiener Neustadt. - = succeed "," do - %em Wiener Klinische Wochenschrift - 110:824-833, 1998. - %dt - [ - %a{:name => "kramer98"}> 42 - ] - %dd - S. Kramer, B. Pfahringer, and C. Helma. - Stochastic propositionalization of non-determinate background - knowledge. - In - = succeed "," do - %em - Proceedings of the 8th International Workshop on Inductive - Logic Programming (ILP-98) - pages 80-94, Berlin Heidelberg New York, 1998. - Springer. - %dt - [ - %a{:name => "steinkellner98"}> 43 - ] - %dd - H. Steinkellner, M.S. Kong, C. Helma, S. Ecker, T.H. Ma, O. Horak, M. Kundi, - and S. Knasmüller. - Genotoxic effects of heavy metals: Comparative investigation with - plant bioassays. - = succeed "," do - %em Environ. Mol. Mutagen. - 31:183-191, 1998. - %dt - [ - %a{:name => "helma97a"}> 44 - ] - %dd - C. Helma and S. Knasmüller. - Die Belastung von Gewässern mit gentoxischen Substanzen - IIa: Die Quellen gentoxischer Kontaminationen (Industrielle - Emissionen). - = succeed "," do - %em UWSF-Z.Umweltchem.Ökotox. - 9:41-48, 1997. - %dt - [ - %a{:name => "helma97b"}> 45 - ] - %dd - C. Helma and S. Knasmüller. - Die Belastung von Gewässern mit gentoxischen Substanzen - IIb: Die Quellen gentoxischer Kontaminationen (Nichtindustrielle - Emissionen). - = succeed "," do - %em UWSF-Z.Umweltchem.Ökotox. - 9:163-168, 1997. - %dt - [ - %a{:name => "helma97c"}> 46 - ] - %dd - C. Helma. - Die Situation der Chlorchemie in Östereich: Chlorhältige - Pflanzenschutz- Holzschutz und Wasserdesinfektionsmittel - Entwicklungen im - Zeitraum 1993 bis 1997. - Technical report, Gesellschaft Österreichischer Chemiker, 1997. - %dt - [ - %a{:name => "knasmueller97"}> 47 - ] - %dd - S. Knasmüller, W. Parzefall, C. Helma, F. Kassie, S. Ecker, and - R. Schulte-Hermann. - Toxic effects of griseofulvin: Disease models, mechanisms, and risk - assessment. - = succeed "," do - %em Critical Reviews in Toxicology - 27:495-537, 1997. - %dt - [ - %a{:name => "kramer97a"}> 48 - ] - %dd - S. Kramer, B. Pfahringer, and C. Helma. - Mining for causes of cancer: Machine learning experiments at various - levels of detail. - In - = succeed "," do - %em - Proceedings of the Third International Conference on - Knowledge Discovery and Data Mining (KDD-97) - Menlo Park, CA, 1997. AAAI - Press. - %dt - [ - %a{:name => "helma96a"}> 49 - ] - %dd - C. Helma, V. Mersch-Sundermann, V.S. Houk, U. Glasbrenner, C. Klein, - L. Wenquing, K. Fekadu, R. Schulte-Hermann, and S. Knasmüller. - Comparative evaluation of four bacterial assays for the detection of - genotoxic effects in water samples. - = succeed "," do - %em Environ. Sci. Technol. - 30:897-907, 1996. - %dt - [ - %a{:name => "helma95"}> 50 - ] - %dd - C. Helma, L. Kronberg, T.H. Ma, and S. Knasmüller. - Genotoxic effects of the chlorinated hydroxyfuranones - 3-chloro-4-(dichloromethyl)-5-hydroxy-2[5H]-furanone and - 3,4-dichloro-5-hydroxy-2[5H]-furanone in - %i Tradescantia - micronucleus assays. - = succeed "," do - %em Mutation Res. - 346:181-186, 1995. - %dt - [ - %a{:name => "helma95b"}> 51 - ] - %dd - C. Helma. - Erfahrungen mit dem Einsatz biologischer Mutationstests zur - Verfahrensoptimierung und Umweltkontrolle. - In - = succeed "," do - %em Handbuch der Umwelttechnik 1995 - pages 266-267. Wien, 1995. - %dt - [ - %a{:name => "helma95c"}> 52 - ] - %dd - C. Helma. - Detection of genotoxic contaminations in water. - In M. Guminska and J. Miedzobrodzki, editors, - = succeed "," do - %em - Molecular Biology - for Environment and Man - pages 99-111. 1995. - %dt - [ - %a{:name => "helma94a"}> 53 - ] - %dd - C. Helma, R. Sommer, R. Schulte-Hermann, and S. Knasmüller. - Enhanced clastogenicity of contaminated ground water following UV - irradiation detected by the - %em Tradescantia - micronucleus assay. - = succeed "," do - %em Mutation Res. - 323:93-98, 1994. - %dt - [ - %a{:name => "helma94b"}> 54 - ] - %dd - C. Helma, S. Knasmüller, and R. Schulte-Hermann. - Die Belastung von Wässern mit gentoxischen Substanzen I. Methoden - zur Prüfung der Gentoxizität. - = succeed "," do - %em UWSF-Z.Umweltchem.Ökotox. - 6:277-288, 1994. - %dt - [ - %a{:name => "helma94c"}> 55 - ] - %dd - C. Helma, S. Knasmüller, and R. Schulte-Hermann. - Biologische Tests zur Prüfung der Gentoxizität: - Einsatzmöglichkeiten zur Verfahrensoptimierung und Emissionskontrolle. - In Brandl et al., editor, - = succeed "," do - %em - Ecoinforma 94. Bd 9, Kanzerogenese - durch Umweltchemikalien - pages 497-512. Wien, 1994. - %dt - [ - %a{:name => "fassold93"}> 56 - ] - %dd - E. Fassold, C. Helma, S. Knasmüller, and R. Sattelberger. - Die Situation der Chlorchemie in Östereich, 8. Teil: - Chlorhältige Pflanzenschutz- Holzschutz und Wasserdesinfektionsmittel. - Technical report, Gesellschaft Österreichischer Chemiker, 1993. - %dt - [ - %a{:name => "helma92"}> 57 - ] - %dd - C. Helma et.al. - Abfallarme Großküche. - Technical report, Österreichisches Ökologie Institut, 1992. - %dt - [ - %a{:name => "helma91"}> 58 - ] - %dd - C. Helma et.al. - Ausstieg aus der Müllverbrennung. - Technical report, Österreichisches Ökologie Institut, 1991. +View publications and citations at +%a{:href => "http://scholar.google.com/citations?user=D7z0GgoAAAAJ"} Google scholar. |