%dl %dt [ %a{ :name => "maunz08b" } 1 ] %dd A. Maunz and C. Helma. Prediction of toxic effects of pharmaceutical agents. In K. V. Balakin, editor, %em Pharmaceutical Data Mining: Approaches and Applications for Drug Discovery , New York, 2009. J. Wiley & Sons, Inc. [  %a{ :href => "http://www.in-silico.de/articles/chapter_mh.pdf" } \.pdf \ ] %dt [ %a{ :name => "maunz09a" } 2 ] %dd A. Maunz, C. Helma, and S. Kramer. Large-scale graph mining using backbone refinement classes. In %em Proceedings of the 15th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD-09) , page in press, 2009. [  %a{ :href => "http://www.maunz.de/ls_graph_mining_using_bbrcs.pdf" } \.pdf \ ] %dt [ %a{ :name => "hammann09a" } 3 ] %dd F. Hammann, H. Gutmann, U. Jecklin, A. Maunz, C. Helma, and J. Drewe. Development of decision tree models for substrates, inhibitors and inducers of P-glycoprotein. %em Current Drug Metabolism , 10:339-46, 2009. %dt [ %a{ :name => "hammann09b" } 4 ] %dd Felix Hammann, Heike Gutmann, Ulli Baumann, Christoph Helma, and Juergen Drewe. Classification of cytochrome p(450) activities using machine learning methods. %em Molecular pharmaceutics , 6:1920-6, 2009. %dt [ %a{ :name => "maunz08a" } 5 ] %dd A. Maunz and C. Helma. Prediction of chemical toxicity with local support vector regression and activity-specific kernels. %em SAR QSAR Environ. Res. , 19:413-431, 2008. [  %a{ :href => "http://www.in-silico.de/articles/mh_tf.pdf" } \.pdf \ ] %dt [ %a{ :name => "benigni07" } 6 ] %dd R. Benigni, T. I. Netzeva, E. Benfenati, C. Bossa, R. Franke, C. Helma, E. Hulzebos, C. Marchant, A. Richard, Y.-T. Woo, and C. Yang. The expanding role of predictive toxicology: an update on the (Q)SAR models for mutagens and carcinogens. %em J Environ Sci Health C Environ Carcinog Ecotoxicol Rev. , 25:53-97, 2007. %dt [ %a{ :name => "helma06a" } 7 ] %dd C. Helma. Lazy structure-activity relationships ( %tt lazar ) for the prediction of rodent carcinogenicity and %em Salmonella mutagenicity. %em Molecular Diversity , 10:147-158, 2006. [  %a{ :href => "http://www.in-silico.de/articles/modi020905.pdf" } \.pdf \ ] %dt [ %a{ :name => "helma06b" } 8 ] %dd C. Helma and J. Kazius. Artificial intelligence and data mining for toxicity prediction. %em Current Computer-Aided Drug Design , 2:1-19, 2006. [  %a{ :href => "http://www.in-silico.de/articles/helma_kazius_ccadd.pdf" } \.pdf \ ] %dt [ %a{ :name => "vracko06" } 9 ] %dd M. Vracko, V. Bandelj, P. Barbieri, E. Benfenati, Q. Chaudhry, M. Cronin, J. Devillers, A. Gallegos, G. Gini, P. Gramatica, C. Helma, D. Neagu, T. Netzeva, M. Pavan, G. Patlevicz, M. Randic, I. Tsakovska, and A. Worth. Validation of counter propagation neural network models for predictive toxicology according to the OECD principles. A case study. %em SAR QSAR Environ. Res. , 17:265-84, 2006. %dt [ %a{ :name => "helma05a" } 10 ] %dd C. Helma. %em Predictive Toxicology \. CRC Press, Boca Raton, 2005. %dt [ %a{ :name => "helma05b" } 11 ] %dd C. Helma. %tt lazar: Lazy Structure - Activity Relationships for toxicity prediction. In C. Helma, editor, %em Predictive Toxicology , pages 479-499. CRC Press, Boca Raton, 2005. %dt [ %a{ :name => "helma05c" } 12 ] %dd C. Helma. %em In Silico predictive toxicology: The state-of-the-art and strategies to predict human health effects. %em Current Opinions in Drug Discovery & Development , 8:27-31, 2005. [  %a{ :href => "http://www.in-silico.de/articles/helma_coddd.pdf" } \.pdf \ ] %dt [ %a{ :name => "helma05d" } 13 ] %dd C. Helma. A brief introduction to predictive toxicology. In C. Helma, editor, %em Predictive Toxicology \. CRC Press, Boca Raton, 2005. %dt [ %a{ :name => "kramer05" } 14 ] %dd S. Kramer and C. Helma. Machine learning and data mining. In C. Helma, editor, %em Predictive Toxicology , pages 223-254. CRC Press, Boca Raton, 2005. %dt [ %a{ :name => "helma04a" } 15 ] %dd C. Helma, T. Kramer, S. Kramer, and L. DeRaedt. Data Mining and Machine Learning techniques for the identification of mutagenicity inducing substructures and Structure-Activity Relationships of noncongeneric compounds. %em J. Chem. Inf. Comput. Sci. , 44:1402-1411, 2004. [  %a{ :href => "http://pubs3.acs.org/acs/journals/doilookup?in_doi=10.1021/ci034254q" } http \ ] %dt [ %a{ :name => "helma04b" } 16 ] %dd C. Helma. Data mining and knowledge discovery in predictive toxicology. %em SAR QSAR Environ. Res. , 15:367-383, 2004. %dt [ %a{ :name => "helma03a" } 17 ] %dd C. Helma and S. Kramer. A survey of the Predictive Toxicology Challenge. %em Bioinformatics , 19:1179-1182, 2003. [  %a{ :href => "http://bioinformatics.oxfordjournals.org/cgi/content/abstract/19/10/1179" } http \ ] %dt [ %a{ :name => "helma03b" } 18 ] %dd C. Helma, S. Kramer, and L. DeRaedt. The molecular feature miner MolFea. In M. Hicks and C. Kettner, editors, %em Proceedings of the Beilstein Workshop 2002: Molecular Informatics: Confronting Complexity , pages 79-93. Beilstein Institut, Frankfurt, 2003. %dt [ %a{ :name => "toivonen03" } 19 ] %dd H. Toivonen, A. Srinivasan, R. D. King, S. Kramer, and C. Helma. Statistical evaluation of the Predictive Toxicology Challenge 2000-2001. %em Bioinformatics , 19:1183-1193, 2003. [  %a{ :href => "http://bioinformatics.oxfordjournals.org/cgi/content/abstract/19/10/1183" } http \ ] %dt [ %a{ :name => "helma02a" } 20 ] %dd C. Helma. Data mining in toxicology. In J.P.V. Heuvel, W.F. Greenlee, G.H. Perdew, and W.B. Mattes, editors, %em Comprehensive Toxicology Vol XX. Cellular and Molecular Toxicology , pages 611-624. Elsevier, 2002. %dt [ %a{ :name => "kassie02" } 21 ] %dd F. Kassie, S. Rabot, M. Uhl, W. Huber, H.M. Qin, C. Helma, R. Schulte-Hermann, and S. Knasmüller. Chemoprotective effects of garden cress (lepidium sativum) and its constituents towards 2-amino-3-methyl-imidazo[4,5-f]quinoline (IQ)-induced genotoxic effects and colonicneoplastic lesions. %em Carcinogenesis , 23:1155-1161, 2002. %dt [ %a{ :name => "kramer02" } 22 ] %dd S. Kramer, E. Frank, and C. Helma. Fragment generation and Support Vector Machines for inducing SARs. %em SAR and QSAR in Environmental Research , 13:509-523, 2002. %dt [ %a{ :name => "gottmann01" } 23 ] %dd E. Gottmann, S. Kramer, B. Pfahringer, and C. Helma. Data quality in predictive toxicology: Reproducibility of rodent carcinogenicity experiments. %em Environ. Health Perspect. , 109:509-514, 2001. [  %a{ :href => "http://www.ehponline.org/members/2001/109p509-514gottmann/gottmann-full.html" } \.html \ ] %dt [ %a{ :name => "helma01b" } 24 ] %dd C. Helma, R.D. King, S. Kramer, and A. Srinivasan. The Predictive Toxicology Challenge 2000-2001. %em Bioinformatics , 17:107-108, 2001. [  %a{ :href => "http://bioinformatics.oupjournals.org/cgi/reprint/17/1/107.pdf" } \.pdf \ ] %dt [ %a{ :name => "kramer01e" } 25 ] %dd S. Kramer, L. De Raedt, and C. Helma. Molecular feature mining in HIV data. In %em Proceedings of the Seventh ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD-01) , pages 136-143, 2001. %dt [ %a{ :name => "helma00a" } 26 ] %dd C. Helma, S. Kramer, B. Pfahringer, and E. Gottmann. Data quality in predictive toxicology: Identification of chemical structures and calculation of chemical properties. %em Environ. Health Perspect. , 108:1029-1033, 2000. [  %a{ :href => "http://ehpnet1.niehs.nih.gov/docs/2000/108p1029-1033helma/abstract.html" } \.html \ ] %dt [ %a{ :name => "helma00b" } 27 ] %dd C. Helma, E. Gottmann, and S. Kramer. Knowledge discovery and data mining in toxicology. %em Stat Methods Med Res. , 9:329-358, 2000. [  %a{ :href => "http://www.in-silico.de/articles/smmr.pdf" } \.pdf \ ] %dt [ %a{ :name => "helma00c" } 28 ] %dd C. Helma, S. Kramer, and B. Pfahringer. Carcinogenicity prediction for noncongeneric compounds: Experiments with the Machine Learning Program SRT and various sets of chemical descriptors. In %em Molecular Modelling and Prediction of Bioactivity , page 464, 2000. %dt [ %a{ :name => "helma00d" } 29 ] %dd C. Helma and M. Uhl. A public domain image analysis program for the single cell gel electrophoresis (comet) assay. %em Mutation Res. , 466:9-15, 2000. [  %a{ :href => "http://www.in-silico.de/articles/comet.pdf" } \.pdf \ ] %dt [ %a{ :name => "helma00e" } 30 ] %dd C. Helma, E. Gottmann, S. Kramer, and B. Pfahringer. The application of machine learning algorithms to detect chemical properties responsible for carcinogenicity. In K. Gundertofte and F.S. Jorgensen, editors, %em Molecular Modeling and Prediction of Bioactivity , pages 464-466, New York, 2000. Kluwer Academic/Plenum Publishers. %dt [ %a{ :name => "helma00f" } 31 ] %dd C. Helma, E. Gottmann, S. Kramer, and B. Pfahringer. Artificial Intelligence Methoden zur Vorhersage der Kanzerogenität organischer Verbindungen. In H. Schöffl, H. Spielmann, and H.A. Tritthart, editors, %em Ersatz- und Ergänzungsmethoden zu Tierversuchen: Forschung ohne Tierversuche , pages 128-134, Wien-New York, 2000. Springer Verlag. %dt [ %a{ :name => "uhl00" } 32 ] %dd M. Uhl, C. Helma, and S. Knasmüller. Evaluation of the single cell gel electrophoretic assay with human hepatoma (HepG2) cells. %em Mutation Res. , 468:213-225, 2000. %dt [ %a{ :name => "helma99a" } 33 ] %dd C. Helma, E. Gottmann, S. Kramer, and B. Pfahringer. Data quality issues in toxicological knowledge discovery. In %em Predictive Toxicology of Chemicals: Experiences and Impact of AI Tools , pages 8-11, Menlo Park, California, 1999. AAAI Press. %dt [ %a{ :name => "pfahringer99" } 34 ] %dd B. Pfahringer, E. Gottmann, C. Helma, and S. Kramer. Efficiency/representational issues in toxicological knowledge discovery. In %em Predictive Toxicology of Chemicals: Experiences and Impact of AI Tools , pages 86-89, Menlo Park, California, 1999. AAAI Press. %dt [ %a{ :name => "uhl99" } 35 ] %dd M. Uhl, C. Helma, and S. Knasmüller. Single-cell gel electrophoresis assays with human-derived hepatoma (HepG2) cells. %em Mutation Res. , 441:215-224, 1999. %dt [ %a{ :name => "helma98a" } 36 ] %dd C. Helma, E. Gottmann, S. Kramer, and B. Pfahringer. The application of machine learning algorithms to detect chemical properties responsible for carcinogenicity. In %em Molecular Modelling and Prediction of Bioactivity. Proceedings of the 12th European Symposium on Quantitative Structure-Activity Relationships , 1998. %dt [ %a{ :name => "helma98b" } 37 ] %dd C. Helma, P. Eckl, E. Gottmann, F. Kassie, W. Rodinger, H. Steinkellner, C. Windpassinger, R. Schulte-Hermann, and S. Knasmüller. Genotoxic and ecotoxic effects of groundwaters and their relation to routinely measured chemical parameters. %em Environ. Sci. Technol. , 32:1799-1805, 1998. %dt [ %a{ :name => "knasmueller98" } 38 ] %dd S. Knasmüller, C. Helma, P. Eckl, E. Gottmann, H. Steinkellner, F. Kassie, T. Haider, W. Parzefall, and R. Schulte-Hermann. Investigations on genotoxic effects of groundwater from the Mitterndorfer Senke from the vicinity of Wiener Neustadt. %em Wiener Klinische Wochenschrift , 110:824-833, 1998. %dt [ %a{ :name => "kramer98" } 39 ] %dd S. Kramer, B. Pfahringer, and C. Helma. Stochastic propositionalization of non-determinate background knowledge. In %em Proceedings of the 8th International Workshop on Inductive Logic Programming (ILP-98) , pages 80-94, Berlin Heidelberg New York, 1998. Springer. %dt [ %a{ :name => "steinkellner98" } 40 ] %dd H. Steinkellner, M.S. Kong, C. Helma, S. Ecker, T.H. Ma, O. Horak, M. Kundi, and S. Knasmüller. Genotoxic effects of heavy metals: Comparative investigation with plant bioassays. %em Environ. Mol. Mutagen. , 31:183-191, 1998. %dt [ %a{ :name => "helma97a" } 41 ] %dd C. Helma and S. Knasmüller. Die Belastung von Gewässern mit gentoxischen Substanzen IIa: Die Quellen gentoxischer Kontaminationen (Industrielle Emissionen). %em UWSF-Z.Umweltchem.Ökotox. , 9:41-48, 1997. %dt [ %a{ :name => "helma97b" } 42 ] %dd C. Helma and S. Knasmüller. Die Belastung von Gewässern mit gentoxischen Substanzen IIb: Die Quellen gentoxischer Kontaminationen (Nichtindustrielle Emissionen). %em UWSF-Z.Umweltchem.Ökotox. , 9:163-168, 1997. %dt [ %a{ :name => "helma97c" } 43 ] %dd C. Helma. Die Situation der Chlorchemie in Östereich: Chlorhältige Pflanzenschutz- Holzschutz und Wasserdesinfektionsmittel - Entwicklungen im Zeitraum 1993 bis 1997. Technical report, Gesellschaft Österreichischer Chemiker, 1997. %dt [ %a{ :name => "knasmueller97" } 44 ] %dd S. Knasmüller, W. Parzefall, C. Helma, F. Kassie, S. Ecker, and R. Schulte-Hermann. Toxic effects of griseofulvin: Disease models, mechanisms, and risk assessment. %em Critical Reviews in Toxicology , 27:495-537, 1997. %dt [ %a{ :name => "kramer97a" } 45 ] %dd S. Kramer, B. Pfahringer, and C. Helma. Mining for causes of cancer: Machine learning experiments at various levels of detail. In %em Proceedings of the Third International Conference on Knowledge Discovery and Data Mining (KDD-97) , Menlo Park, CA, 1997. AAAI Press. %dt [ %a{ :name => "helma96a" } 46 ] %dd C. Helma, V. Mersch-Sundermann, V.S. Houk, U. Glasbrenner, C. Klein, L. Wenquing, K. Fekadu, R. Schulte-Hermann, and S. Knasmüller. Comparative evaluation of four bacterial assays for the detection of genotoxic effects in water samples. %em Environ. Sci. Technol. , 30:897-907, 1996. %dt [ %a{ :name => "helma95" } 47 ] %dd C. Helma, L. Kronberg, T.H. Ma, and S. Knasmüller. Genotoxic effects of the chlorinated hydroxyfuranones 3-chloro-4-(dichloromethyl)-5-hydroxy-2[5H]-furanone and 3,4-dichloro-5-hydroxy-2[5H]-furanone in %i Tradescantia micronucleus assays. %em Mutation Res. , 346:181-186, 1995. %dt [ %a{ :name => "helma95b" } 48 ] %dd C. Helma. Erfahrungen mit dem Einsatz biologischer Mutationstests zur Verfahrensoptimierung und Umweltkontrolle. In %em Handbuch der Umwelttechnik 1995 , pages 266-267. Wien, 1995. %dt [ %a{ :name => "helma95c" } 49 ] %dd C. Helma. Detection of genotoxic contaminations in water. In M. Guminska and J. Miedzobrodzki, editors, %em Molecular Biology for Environment and Man , pages 99-111. 1995. %dt [ %a{ :name => "helma94a" } 50 ] %dd C. Helma, R. Sommer, R. Schulte-Hermann, and S. Knasmüller. Enhanced clastogenicity of contaminated ground water following UV irradiation detected by the %em Tradescantia micronucleus assay. %em Mutation Res. , 323:93-98, 1994. %dt [ %a{ :name => "helma94b" } 51 ] %dd C. Helma, S. Knasmüller, and R. Schulte-Hermann. Die Belastung von Wässern mit gentoxischen Substanzen I. Methoden zur Prüfung der Gentoxizität. %em UWSF-Z.Umweltchem.Ökotox. , 6:277-288, 1994. %dt [ %a{ :name => "helma94c" } 52 ] %dd C. Helma, S. Knasmüller, and R. Schulte-Hermann. Biologische Tests zur Prüfung der Gentoxizität: Einsatzmöglichkeiten zur Verfahrensoptimierung und Emissionskontrolle. In Brandl et al., editor, %em Ecoinforma 94. Bd 9, Kanzerogenese durch Umweltchemikalien , pages 497-512. Wien, 1994. %dt [ %a{ :name => "fassold93" } 53 ] %dd E. Fassold, C. Helma, S. Knasmüller, and R. Sattelberger. Die Situation der Chlorchemie in Östereich, 8. Teil: Chlorhältige Pflanzenschutz- Holzschutz und Wasserdesinfektionsmittel. Technical report, Gesellschaft Österreichischer Chemiker, 1993. %dt [ %a{ :name => "helma92" } 54 ] %dd C. Helma et.al. Abfallarme Großküche. Technical report, Österreichisches Ökologie Institut, 1992. %dt [ %a{ :name => "helma91" } 55 ] %dd C. Helma et.al. Ausstieg aus der Müllverbrennung. Technical report, Österreichisches Ökologie Institut, 1991.