Fixed PORT to NGINX_PORT

6 files changed, 36 insertions, 36 deletions

diff --git a/aa-server.yaml b/aa-server.yaml
index 5ca2b72..aa08799 100644
--- a/aa-server.yaml
+++ b/aa-server.yaml
@@ -15,25 +15,25 @@
 # Exceptions:
   :free_uris: #request-method for uri not controlled by A&A
     ? - :GET
-    : - !ruby/regexp /http:\/\/ESCAPEDSERVERPORT\/algorithm/
-      - "http://SERVERNAMEPORT/model"
-      - "http://SERVERNAMEPORT/dataset"
-      - "http://SERVERNAMEPORT/validation"
-      - !ruby/regexp /http:\/\/ESCAPEDSERVERPORT\/validation\/resources/
-      - !ruby/regexp /http:\/\/ESCAPEDSERVERPORT\/validation\/[a-z,A-Z,\/,_\-]*$/
+    : - !ruby/regexp /http:\/\/ESCAPEDSERVERNGINX_PORT\/algorithm/
+      - "http://SERVERNAMENGINX_PORT/model"
+      - "http://SERVERNAMENGINX_PORT/dataset"
+      - "http://SERVERNAMENGINX_PORT/validation"
+      - !ruby/regexp /http:\/\/ESCAPEDSERVERNGINX_PORT\/validation\/resources/
+      - !ruby/regexp /http:\/\/ESCAPEDSERVERNGINX_PORT\/validation\/[a-z,A-Z,\/,_\-]*$/
     ? - :GET
       - :POST
-    : - !ruby/regexp /http:\/\/ESCAPEDSERVERPORT\/toxcreate\/[a-z,A-Z,\/,_\-]*$/
-      - !ruby/regexp /http:\/\/ESCAPEDSERVERPORT\/task/
-      - !ruby/regexp /http:\/\/ESCAPEDSERVERPORT\/compound/
+    : - !ruby/regexp /http:\/\/ESCAPEDSERVERNGINX_PORT\/toxcreate\/[a-z,A-Z,\/,_\-]*$/
+      - !ruby/regexp /http:\/\/ESCAPEDSERVERNGINX_PORT\/task/
+      - !ruby/regexp /http:\/\/ESCAPEDSERVERNGINX_PORT\/compound/
       - !ruby/regexp /sign_(in|out)$/
     ? - :PUT
-    : - !ruby/regexp /http:\/\/ESCAPEDSERVERPORT\/task/
+    : - !ruby/regexp /http:\/\/ESCAPEDSERVERNGINX_PORT\/task/
 
   :authorize_exceptions: #request-method for uri only authenticated, no authorization
     ? - :POST
-    : - !ruby/regexp /http:\/\/ESCAPEDSERVERPORT\/algorithm/
-      - "http://SERVERNAMEPORT/dataset"
-      - "http://SERVERNAMEPORT/model"
-      - "http://SERVERNAMEPORT/validation"
-      - !ruby/regexp /http\:\/\/ESCAPEDSERVERPORT\/validation\/[a-z,A-Z,\/,_\-]*$/
+    : - !ruby/regexp /http:\/\/ESCAPEDSERVERNGINX_PORT\/algorithm/
+      - "http://SERVERNAMENGINX_PORT/dataset"
+      - "http://SERVERNAMENGINX_PORT/model"
+      - "http://SERVERNAMENGINX_PORT/validation"
+      - !ruby/regexp /http\:\/\/ESCAPEDSERVERNGINX_PORT\/validation\/[a-z,A-Z,\/,_\-]*$/
diff --git a/config.sh b/config.sh
index 9ebd47d..a50b05b 100755
--- a/config.sh
+++ b/config.sh
@@ -22,8 +22,8 @@ REDIS_NUM_VER="2.2.2"
 # 4) Server settings.
 NGINX_SERVERNAME="toxcreate3.in-silico.ch"
 WWW_DEST="$OT_PREFIX/www"
-PORT=":8081" # set to empty string ("") for port 80 otherwise set to port *using colon* e.g. ":8080"
-OHM_PORT="6379" # set to port (no colon)
+NGINX_PORT=":8081" # set to empty string ("") for port 80 otherwise set to port *using colon* e.g. ":8080"
+OHM_PORT="6380" # set to port (no colon)
 
 # Done.
 
diff --git a/nginx.conf b/nginx.conf
index 4372940..6a8186a 100644
--- a/nginx.conf
+++ b/nginx.conf
@@ -8,14 +8,14 @@ http {
 
     server_names_hash_bucket_size  256;
 
-    passenger_root RUBY_DEST/lib/ruby/gems/1.8/gems/PASSENGER;
-    passenger_ruby RUBY_DEST/bin/ruby;
-    passenger_default_user USER;
+    passenger_root /home/am/opentox-ruby/ruby-enterprise-1.8.7-2011.03/lib/ruby/gems/1.8/gems/passenger-3.0.9;
+    passenger_ruby /home/am/opentox-ruby/ruby-enterprise-1.8.7-2011.03/bin/ruby;
+    passenger_default_user am;
     passenger_log_level 2;
     passenger_spawn_method conservative;
     #passenger_use_global_queue on;
 
-    include       NGINX_DEST/conf/mime.types;
+    include       /home/am/opentox-ruby/nginx/conf/mime.types;
     default_type  application/octet-stream;
 
     sendfile        on;
@@ -25,9 +25,9 @@ http {
     server {
       listen PORT;
       client_max_body_size 5000m;
-      server_name SERVERNAME;
+      server_name z21mn;
       location / {
-        root WWW_DEST;
+        root /home/am/opentox-ruby/www;
         passenger_enabled on;
       }
       passenger_base_uri /compound;
diff --git a/nginx.sh b/nginx.sh
index 3a872bc..32efc96 100755
--- a/nginx.sh
+++ b/nginx.sh
@@ -53,11 +53,11 @@ servername=`hostname`
 $GIT checkout nginx.conf>>$LOG 2>&1
 cmd="sed -i -e \"s,PASSENGER,$passenger,;s,SERVERNAME,$servername,;s,RUBY_DEST,$RUBY_DEST,;s,NGINX_DEST,$NGINX_DEST,;s,WWW_DEST,$WWW_DEST,\" ./nginx.conf" && run_cmd "$cmd" "Config"
 cmd="sed -i -e \"s,USER,`whoami`,\" ./nginx.conf" && run_cmd "$cmd" "User"
-PORT=`echo "$PORT" | sed 's/^.//g'`
-if [ -z "$PORT" ]; then
-  PORT=80
+NGINX_PORT=`echo "$NGINX_PORT" | sed 's/^.//g'`
+if [ -z "$NGINX_PORT" ]; then
+  NGINX_PORT=80
 fi
-cmd="sed -i -e \"s,PORT,$PORT,\" ./nginx.conf" && run_cmd "$cmd" "Port"
+cmd="sed -i -e \"s,NGINX_PORT,$NGINX_PORT,\" ./nginx.conf" && run_cmd "$cmd" "NGINX_PORT"
 cmd="cp ./nginx.conf \"$NGINX_DEST/conf\"" && run_cmd "$cmd" "Copy"
 
 if [ ! -f $NGINX_CONF ]; then
diff --git a/opentox-ruby.sh b/opentox-ruby.sh
index f6fa077..ec7f5c2 100755
--- a/opentox-ruby.sh
+++ b/opentox-ruby.sh
@@ -71,8 +71,8 @@ mkdir -p "$HOME/.opentox/tmp" >>$LOG 2>&1
 $GIT checkout production.yaml      >>$LOG 2>&1
 $GIT checkout aa-$OT_INSTALL.yaml  >>$LOG 2>&1
 
-cmd="sed -e \"s,SERVERNAME,$servername,;s,ESCAPEDSERVER,$escapedserver,;s,LOGGER,$logger,;s,AA,$aa,;s,WWW_DEST,$WWW_DEST,;s,PORT,$PORT,;s,OHM_PORT,$OHM_PORT,\" production.yaml > $HOME/.opentox/config/production.yaml" && run_cmd "$cmd" "Config 1"
-cmd="sed -e \"s,SERVERNAME,$servername,;s,ESCAPEDSERVER,$escapedserver,;s,LOGGER,$logger,;s,AA,$aa,;s,WWW_DEST,$WWW_DEST,;s,PORT,$PORT,;s,OHM_PORT,$OHM_PORT,\" aa-$OT_INSTALL.yaml >> $HOME/.opentox/config/production.yaml" && run_cmd "$cmd" "Config 2"
+cmd="sed -e \"s,SERVERNAME,$servername,;s,ESCAPEDSERVER,$escapedserver,;s,LOGGER,$logger,;s,AA,$aa,;s,WWW_DEST,$WWW_DEST,;s,NGINX_PORT,$NGINX_PORT,;s,OHM_PORT,$OHM_PORT,\" production.yaml > $HOME/.opentox/config/production.yaml" && run_cmd "$cmd" "Config 1"
+cmd="sed -e \"s,SERVERNAME,$servername,;s,ESCAPEDSERVER,$escapedserver,;s,LOGGER,$logger,;s,AA,$aa,;s,WWW_DEST,$WWW_DEST,;s,NGINX_PORT,$NGINX_PORT,;s,OHM_PORT,$OHM_PORT,\" aa-$OT_INSTALL.yaml >> $HOME/.opentox/config/production.yaml" && run_cmd "$cmd" "Config 2"
 
 if [ "$OT_BRANCH" = "development" ] || expr match "$OT_BRANCH" "release"; then
   mkdir -p $WWW_DEST/opentox >>$LOG 2>&1
diff --git a/production.yaml b/production.yaml
index 709b133..e0f39d4 100644
--- a/production.yaml
+++ b/production.yaml
@@ -2,13 +2,13 @@
 
 :services:
 # make sure to enter a full uri (including training slash)
-  opentox-compound:      "http://SERVERNAMEPORT/compound/"
-  opentox-dataset:       "http://SERVERNAMEPORT/dataset/"
-  opentox-algorithm:     "http://SERVERNAMEPORT/algorithm/"
-  opentox-model:         "http://SERVERNAMEPORT/model/"
-  opentox-task:          "http://SERVERNAMEPORT/task/"
-  opentox-toxcreate:     "http://SERVERNAMEPORT/toxcreate/"
-  opentox-validation:    "http://SERVERNAMEPORT/validation/"
+  opentox-compound:      "http://SERVERNAMENGINX_PORT/compound/"
+  opentox-dataset:       "http://SERVERNAMENGINX_PORT/dataset/"
+  opentox-algorithm:     "http://SERVERNAMENGINX_PORT/algorithm/"
+  opentox-model:         "http://SERVERNAMENGINX_PORT/model/"
+  opentox-task:          "http://SERVERNAMENGINX_PORT/task/"
+  opentox-toxcreate:     "http://SERVERNAMENGINX_PORT/toxcreate/"
+  opentox-validation:    "http://SERVERNAMENGINX_PORT/validation/"
   opentox-ontology:      "http://apps.ideaconsult.net:8080/ontology"
 
 :json_hosts: