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authorAndreas Maunz <andreas@maunz.de>2011-05-03 14:22:26 +0200
committerAndreas Maunz <andreas@maunz.de>2011-05-03 14:22:26 +0200
commit12295ec16b611720b15b57a64a35b81ce28e6eec (patch)
tree947a2959c83aac8d52b68e0b360b70fdfbca2d3a
parent456c8cc1448a7f4d83bf5790236d79ebbe9525d9 (diff)
parent5c4240c295466fe56dea73b26710a9798c8570e6 (diff)
Merge branch 'development' of github.com:opentox/install into development
-rwxr-xr-xbase-install.sh2
-rwxr-xr-xopentox-ruby.sh4
-rwxr-xr-xopentox-webservices.sh2
3 files changed, 4 insertions, 4 deletions
diff --git a/base-install.sh b/base-install.sh
index 4f554fc..fbf0689 100755
--- a/base-install.sh
+++ b/base-install.sh
@@ -27,7 +27,7 @@ fi
touch $OT_UI_CONF
# Pkgs
-packs="binutils build-essential git-core hostname libcurl4-openssl-dev libgsl0-dev libreadline5-dev libreadline-dev libssl-dev libxml2-dev libxslt1-dev lsb-release pwgen raptor-utils r-base r-base-core r-base-dev sun-java6-jdk wget zlib1g-dev"
+packs="binutils build-essential git-core gnuplot hostname libcurl4-openssl-dev libgsl0-dev libreadline5-dev libreadline-dev libsqlite3-dev libssl-dev libxml2-dev libxslt1-dev lsb-release pwgen raptor-utils r-base r-base-core r-base-dev sqlite3 sun-java6-jdk wget xsltproc zlib1g-dev"
echo
echo "Base Packages:"
diff --git a/opentox-ruby.sh b/opentox-ruby.sh
index 607cf18..d101600 100755
--- a/opentox-ruby.sh
+++ b/opentox-ruby.sh
@@ -8,7 +8,7 @@
DIR="`pwd`"
if [ "$(id -u)" = "0" ]; then
- echo "This script must be run as non-root." 1>&2
+ echo "This script must be run as non-root." 1>&264
exit 1
fi
@@ -61,7 +61,7 @@ fi
if [ "$OT_INSTALL" = "server" ]; then
aa="https:\/\/opensso.in-silico.ch"
else
- aa=nil
+ aa=""
fi
mkdir -p "$HOME/.opentox/config" >>$LOG 2>&1
diff --git a/opentox-webservices.sh b/opentox-webservices.sh
index 7e904ad..23af311 100755
--- a/opentox-webservices.sh
+++ b/opentox-webservices.sh
@@ -42,7 +42,7 @@ echo "Webservices ('$LOG'):"
mkdir -p "$WWW_DEST/opentox" >>$LOG 2>&1
cd "$WWW_DEST/opentox" >>$LOG 2>&1
-for s in compound dataset algorithm model toxcreate task; do
+for s in compound dataset algorithm model toxcreate task validation; do
rm -rf "$s" >>$LOG 2>&1
$GIT clone "git://github.com/opentox/$s.git" "$s" >>$LOG 2>&1
cd "$s" >>$LOG 2>&1