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| author | David Vorgrimmler <vorgrimmlerdavid@gmx.de> | 2012-04-20 11:52:31 +0200 |
|---|---|---|
| committer | David Vorgrimmler <vorgrimmlerdavid@gmx.de> | 2012-04-20 11:52:31 +0200 |
| commit | 8b4eecca7381c8c6fa4e941227058054e40dedf2 (patch) | |
| tree | 8e738e64bc62f26bc92211d50785ffb6f0d7768c | |
| parent | 1684c349afa0ed169e1def2eb5c70f0948a209f4 (diff) | |
Added new config file(pc) / R package (validation)
| -rwxr-xr-x | opentox-ruby.sh | 3 | ||||
| -rw-r--r-- | packs.R | 2 |
2 files changed, 2 insertions, 3 deletions
diff --git a/opentox-ruby.sh b/opentox-ruby.sh index 380dc3d..f080373 100755 --- a/opentox-ruby.sh +++ b/opentox-ruby.sh @@ -73,8 +73,7 @@ $GIT checkout aa-$OT_INSTALL.yaml >>$LOG 2>&1 cmd="sed -e \"s,SERVERNAME,$servername,;s,ESCAPEDSERVER,$escapedserver,;s,LOGGER,$logger,;s,AA,$aa,;s,WWW_DEST,$WWW_DEST,;s,NGINX_PORT,$NGINX_PORT,;s,OHM_PORT,$OHM_PORT,\" production.yaml > $HOME/.opentox/config/production.yaml" && run_cmd "$cmd" "Config 1" cmd="sed -e \"s,SERVERNAME,$servername,;s,ESCAPEDSERVER,$escapedserver,;s,LOGGER,$logger,;s,AA,$aa,;s,WWW_DEST,$WWW_DEST,;s,NGINX_PORT,$NGINX_PORT,;s,OHM_PORT,$OHM_PORT,\" aa-$OT_INSTALL.yaml >> $HOME/.opentox/config/production.yaml" && run_cmd "$cmd" "Config 2" -cmd="cp ambit_descriptors.yaml $HOME/.opentox/config/" && run_cmd "$cmd" "Ambit" -cmd="cp jl_keys.yaml $HOME/.opentox/config/" && run_cmd "$cmd" "JOELib" +cmd="cp pc_descriptors.yaml $HOME/.opentox/config/" && run_cmd "$cmd" "Ambit" if [ "$OT_BRANCH" = "development" ] || expr match "$OT_BRANCH" "release"; then mkdir -p $WWW_DEST/opentox >>$LOG 2>&1 @@ -3,4 +3,4 @@ # set mirror to avoid questioning the user options(repos="http://mirrors.softliste.de/cran") -install.packages(c("caret", "doMC", "e1071", "foreach", "iterators", "kernlab", "multicore", "plyr", "reshape", "randomForest", "RANN")) +install.packages(c("caret", "doMC", "e1071", "foreach", "iterators", "kernlab", "multicore", "plyr", "reshape", "randomForest", "RANN", "TunePareto")) |