Removing existing dirs

1 files changed, 2 insertions, 7 deletions

diff --git a/opentox-webservices.sh b/opentox-webservices.sh
index 304c8b2..0cb69c2 100755
--- a/opentox-webservices.sh
+++ b/opentox-webservices.sh
@@ -34,21 +34,16 @@ DIR=`pwd`
 mkdir -p "$WWW_DEST/opentox" >>$LOG 2>&1
 cd "$WWW_DEST/opentox" >>$LOG 2>&1
 for s in compound dataset algorithm model toxcreate task; do
+    rm -rf "$s" >>$LOG 2>&1
     git clone "git://github.com/opentox/$s.git" "$s" >>$LOG 2>&1
-
     cd "$s" >>$LOG 2>&1
-
-    git checkout -t origin/master>>$LOG 2>&1
-
+    git checkout -t origin/$OT_BRANCH >>$LOG 2>&1
     rm -rf public >>$LOG 2>&1
     mkdir public >>$LOG 2>&1
-
     mypath_from="$WWW_DEST/opentox/$s/public"
     mypath_to="$WWW_DEST/$s"
     cmd="ln -sf \"$mypath_from\" \"$mypath_to\"" && run_cmd "$cmd" "Linking $s"
-
     cd - >>$LOG 2>&1
-
 done
 
 # validation service