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-rwxr-xr-xenvironment_update.sh77
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-#!/bin/sh
-# Update script for OpenTox-ruby and webservices
-# Authors: Andreas Maunz, David Vorgrimmler
-# This script updates a productiv version of IST Opentox Services. All data will be saved and recovered.
-# Make sure your web services are down befor running this script.
-# You may modify some variables e.g. HOME, OTPREFIX, BACKUP_DIR.
-# opentox/install is needed and has to be configured
-
-HOME="/home/opentox"
-. $HOME/.opentox-ui.sh
-
-OTPREFIX="$HOME/opentox"
-BACKUP_DIR="$OTPREFIX/ot-server-backup"
-mkdir $BACKUP_DIR >/dev/null 2>&1
-mkdir -p $BACKUP_DIR/tmp/dataset/public >/dev/null 2>&1
-mkdir -p $BACKUP_DIR/tmp/model/public >/dev/null 2>&1
-mkdir -p $BACKUP_DIR/tmp/validation >/dev/null 2>&1
-#mkdir -p $BACKUP_DIR/tmp/log >/dev/null 2>&1
-
-
-echo "Creating backup of www..."
-TAR_NAME=$BACKUP_DIR/"www_`date +%y%m%d`.tar.gz"
-
-if [ -e $TAR_NAME ] || tar czvf $TAR_NAME "$OTPREFIX/opentox-ruby/www"; then
- echo
- echo "Will delete www in 10s! Press Ctrl+C to abort..."
- sleep 10
- sudo rm -rf "$OTPREFIX/opentox-ruby/www"
-fi
-
-
-NGINX="`which nginx`"
-RAKE="`which rake`"
-
-if ! [ -e "$RAKE" ]; then
- echo "Rake not found."
- exit 1
-fi
-if ! [ -e "$NGINX" ]; then
- echo "Nginx not found."
- exit 1
-fi
-if ! cd "$OTPREFIX/install"; then
- echo "$OTPREFIX/install dir not found"
-fi
-
-
-OTINSTALL="$OTPREFIX/install/opentox-webservices.sh"
-if ! [ -e "$OTINSTALL" ]; then
- echo "$OTINSTALL not found."
- exit 1
-fi
-chmod +x $OTINSTALL
-`$OTINSTALL`
-echo "$OTINSTALL script end."
-
-
-OTRUBYINSTALL="$OTPREFIX/install/opentox-ruby.sh"
-if ! [ -e "$OTRUBYINSTALL" ]; then
- echo "$OTRUBYINSTALL not found."
- exit 1
-fi
-chmod +x $OTRUBYINSTALL
-`$OTRUBYINSTALL`
-echo "$OTRUBYINSTALL script end."
-
-
-echo "Extracting backup of www..."
-cd /
-DEST_DATASET=`echo "$OTPREFIX/opentox-ruby/www/opentox/dataset/public/*yaml" | sed 's/.\(.*\)/\1/'`
-DEST_MODEL=`echo "$OTPREFIX/opentox-ruby/www/opentox/model/public/*yaml" | sed 's/.\(.*\)/\1/'`
-DEST_REPORTS=`echo "$OTPREFIX/opentox-ruby/www/opentox/validation/reports" | sed 's/.\(.*\)/\1/'`
-tar xzvf $TAR_NAME --wildcards $DEST_DATASET
-tar xzvf $TAR_NAME --wildcards $DEST_MODEL
-tar xzvf $TAR_NAME $DEST_REPORTS
-cd -
-echo "End of script."