diff options
Diffstat (limited to 'install')
| -rwxr-xr-x | install | 94 |
1 files changed, 49 insertions, 45 deletions
@@ -8,59 +8,63 @@ if [ "$(id -u)" = "0" ]; then fi echo -echo "Warning! If all IST services are stoppped press return, else <Ctrl+C> to stop installation." -echo "Note: Your data will be backupped." -read help_var -echo +echo "OpenTox Ruby" +echo "Hit <Return> If all services are stoppped, else hit <Ctrl+C>." +read delete_me -mkdir -p $HOME/tmp/ >/dev/null 2>&1 +echo "Note: CONFIG (~/.opentox) will be backupped." +mkdir -p $OT_PREFIX/tmp/ >/dev/null 2>&1 DATE=`date +_%Y%m%d_%H_%M` -if [ -f "$HOME/.opentox-ui.sh" ] -then - mv -v --backup=numbered $HOME/.opentox-ui.sh $HOME/.opentox-ui.sh$DATE -else - echo "$HOME/.opentox-ui.sh not found (nothing to backup)." -fi -if [ -d "$HOME/.opentox" ] -then - mv -v --backup=numbered -T $HOME/.opentox $HOME/.opentox$DATE -else - echo "$HOME/.opentox not found (nothing to backup)." -fi -if [ -d "$HOME/opentox-ruby" ] -then - mv -v --backup=numbered -T $HOME/opentox-ruby $HOME/opentox-ruby$DATE -else - echo "$HOME/opentox-ruby not found (nothing to backup)." -fi -LOG="$HOME/tmp/`basename $0`-log.txt" -. "./utils.sh" +echo "Backups (if any):" +backup_targets="$HOME/.opentox $HOME/opentox-ruby" +for bt in $backup_targets; do + if [ -f $bt ]; then + mv -v --backup=numbered $bt $bt$DATE + elif [ -d $bt ]; then + mv -v --backup=numbered -T $bt $bt$DATE + fi +done +echo "Backup finished." + +. ./utils.sh + +LOG="$OT_PREFIX/tmp/`basename $0`.log" echo -echo "Opentox-ruby installation." -echo "You may need to give root password for some privileged actions right now and later:" +echo "Welcome to base installation for OpenTox compatible services on Ruby and Debian." +echo "IMPORTANT: Hit <Ctrl+C> to adjust config.sh first (<Return> to continue)." +read delete_me +echo +echo -n "We need to do some privileged action. " +sudo echo -n "" echo -cmd="sudo echo -n \"\"" && run_cmd "$cmd" "Acquire privileges" -echo "Cleaning up $HOME/tmp files." -rm -rf $HOME/tmp/openbabel* $HOME/tmp/kernlab* $HOME/tmp/ruby* +[ -f $OT_PREFIX/install/utils.sh ] || (cmd="mkdir -p $OT_PREFIX/install && cp utils.sh $OT_PREFIX/install" && run_cmd "$cmd" "Install utils.sh to OT_PREFIX") +[ -f $HOME/.opentox/config/install/config.sh ] || (cmd="mkdir -p $HOME/.opentox/config/install && cp config.sh $HOME/.opentox/config/install" && run_cmd "$cmd" "Install config.sh to CONFIG (~/.opentox)") + +. ./base-install.sh # Debian specific; disable for others. -. "./base-install.sh" -. "./ruby.sh" -. "./openbabel.sh" -. "./kernlab.sh" -. "./opentox-ruby.sh" +if [ ! -d ~/.rbenv ]; then + cmd="$GIT clone git://github.com/sstephenson/rbenv.git ~/.rbenv" && run_cmd "$cmd" "rbenv" +else + echo "NOTE: 'rbenv' already installed. Leaving untouched." +fi -if [ "$install" != "gem" ] -then - . "./nginx.sh" - . "./redis.sh" - . "./opentox-webservices.sh" +if ! grep "rbenv" $OT_UI_CONF >/dev/null 2>&1 ; then + echo 'if ! echo "$PATH" | grep "$HOME/.rbenv/bin">/dev/null 2>&1; then export PATH="$HOME/.rbenv/bin:$PATH"; eval "$(rbenv init -)"; fi' >> $OT_UI_CONF fi +[ -f $HOME/.opentox/config/ambit_descriptors.yaml ] || (cmd="cp ambit_descriptors.yaml $HOME/.opentox/config/" && run_cmd "$cmd" "Ambit keys file") +[ -f $HOME/.opentox/config/jl_keys.yaml ] || (cmd="cp jl_keys.yaml $HOME/.opentox/config/" && run_cmd "$cmd" "Joelib keys file") + +echo +echo "Installation finished." +echo "Destination (OT_PREFIX): '$OT_PREFIX'" +echo +echo "IMPORTANT: How to configure your system:" +echo "IMPORTANT: a) Include '$OT_UI_CONF' in shell startup (e.g. ~/.bashrc)." +echo "IMPORTANT: b) Manually source '$OT_UI_CONF' every time." +echo "IMPORTANT: The command in both cases: '. $OT_UI_CONF'" +echo "IMPORTANT: NOW would be the best time to configure!" echo -echo "Installation finished and system configured." -echo "Destination: '$OT_PREFIX'" -echo "Nginx: '$NGINX_DEST'" -echo "Redis: '$REDIS_DEST'" -echo "IMPORTANT: Include the file '$OT_UI_CONF' in your shell or system startup to have the system automatically configured." +echo "Thank you for your attention." echo |