diff options
Diffstat (limited to 'kernlab.sh')
| -rwxr-xr-x | kernlab.sh | 47 |
1 files changed, 14 insertions, 33 deletions
@@ -32,53 +32,34 @@ echo echo "Kernlab ('$LOG')." R_DONE=false -mkdir "$KL_DEST" >/dev/null 2>&1 -if [ ! -d "$KL_DEST" ]; then - echo "Install directory '$KL_DEST' is not available! Aborting..." +mkdir "$R_DEST" >/dev/null 2>&1 +if [ ! -d "$R_DEST" ]; then + echo "Install directory '$R_DEST' is not available! Aborting..." exit 1 else - if ! rmdir "$KL_DEST" >/dev/null 2>&1; then # if not empty this will fail + if ! rmdir "$R_DEST" >/dev/null 2>&1; then # if not empty this will fail R_DONE=true else - mkdir "$KL_DEST" >/dev/null 2>&1 + mkdir "$R_DEST" >/dev/null 2>&1 fi fi if ! $R_DONE; then - cd $HOME/tmp - export R_LIBS="$KL_DEST" # To install non-global - - URI="http://cran.r-project.org/src/contrib/Archive/kernlab/kernlab_$KL_VER.tar.gz" - cmd="$WGET $URI" && run_cmd "$cmd" "Download KL" - cmd="$R CMD INSTALL kernlab_$KL_VER.tar.gz" && run_cmd "$cmd" "Install KL" - - - echo "Warning! If you already downloaded pls_2.3-0.tar.gz , robustbase_0.7-8.tar.gz and leaps_2.9.tar.gz from http://cran.r-project.org/src/contrib/ into $HOME/tmp/ press return, else <Ctrl+C> to stop installation." - read help_var2 - echo - #URI="http://cran.r-project.org/src/contrib/pls_2.3-0.tar.gz" - #cmd="$WGET $URI" && run_cmd "$cmd" "Download PLS" - cmd="$R CMD INSTALL pls_2.3-0.tar.gz" && run_cmd "$cmd" "Install PLS" - - #URI="http://cran.r-project.org/src/contrib/00Archive/robustbase/robustbase_0.7-8.tar.gz" - #cmd="$WGET $URI" && run_cmd "$cmd" "Download RB" - cmd="$R CMD INSTALL robustbase_0.7-8.tar.gz" && run_cmd "$cmd" "Install RB" - - #URI="http://cran.r-project.org/src/contrib/leaps_2.9.tar.gz" - #cmd="$WGET $URI" && run_cmd "$cmd" "Download LEAPS" - cmd="$R CMD INSTALL leaps_2.9.tar.gz" && run_cmd "$cmd" "Install LEAPS" + export R_LIBS="$R_DEST" # To install non-global + cmd="$R CMD BATCH packs.R" && run_cmd "$cmd" "R packages" + eval "$cmd" fi -if [ ! -f $KL_CONF ]; then +if [ ! -f $R_CONF ]; then - echo "if echo \"\$R_LIBS\" | grep -v \"$KL_DEST\">/dev/null 2>&1; then export R_LIBS=\"$KL_DEST\"; fi" >> "$KL_CONF" - echo "if ! [ -d \"$KL_DEST\" ]; then echo \"\$0: '$KL_DEST' is not a directory!\"; fi" >> "$KL_CONF" - echo "R package destination has been stored in '$KL_CONF'." + echo "if echo \"\$R_LIBS\" | grep -v \"$R_DEST\">/dev/null 2>&1; then export R_LIBS=\"$R_DEST\"; fi" >> "$R_CONF" + echo "if ! [ -d \"$R_DEST\" ]; then echo \"\$0: '$R_DEST' is not a directory!\"; fi" >> "$R_CONF" + echo "R package destination has been stored in '$R_CONF'." - if ! grep "$KL_CONF" $OT_UI_CONF >/dev/null 2>&1 ; then - echo ". \"$KL_CONF\"" >> $OT_UI_CONF + if ! grep "$R_CONF" $OT_UI_CONF >/dev/null 2>&1 ; then + echo ". \"$R_CONF\"" >> $OT_UI_CONF fi fi |