1 files changed, 0 insertions, 82 deletions
diff --git a/ot-tools-root.sh b/ot-tools-root.sh
deleted file mode 100644
index 7e1233b..0000000
--- a/ot-tools-root.sh
+++ /dev/null
@@ -1,82 +0,0 @@
-# Some useful scripts to put in your ~/.bashrc in case you are using bash (assuming OT_PREFIX is '~/opentox-ruby'):
-# USE ONLY IF YOUR NGINX PORT IS less or equal to 1024 (PRIVILEGED)
-
-# Load server config
-otconfig() {
-  source $HOME/.opentox-ui.sh
-}
-
-# Update the version
-otupdate() {
-  START_DIR=`pwd`
-  otconfig
-  cd $HOME/opentox-ruby/www/opentox
-  for d in `find -not -name "." -type d -maxdepth 1 2>/dev/null`; do echo ; echo $d ; cd $d ; MYBRANCH=`git branch | grep "*" | sed 's/.*\ //g'`; git pull origin $MYBRANCH ; cd - ;  done
-  cd  $HOME/opentox-ruby/www/opentox/algorithm/libfminer
-  mv libbbrc/Makefile libbbrc/Makefile~
-  mv liblast/Makefile liblast/Makefile~
-  if ! git pull; then
-    echo "Error! Pull for Fminer failed."
-    return 1
-  fi
-  mv libbbrc/Makefile~ libbbrc/Makefile
-  mv liblast/Makefile~ liblast/Makefile
-  make -C libbbrc/ clean
-  make -C libbbrc/ ruby
-  make -C liblast/ clean
-  make -C liblast/ ruby
-  cd -
-  cd $HOME/opentox-ruby/www/opentox/algorithm/last-utils
-  if ! git pull; then
-    echo "Error! Pull for Last-Utils failed."
-    return 1
-  fi
-  cd -
-  cd opentox-ruby
-  LINK_DIR=`gem which opentox-ruby | sed 's/\/opentox-ruby.rb//'`
-  if [ -h $LINK_DIR ]; then 
-    rm -f $LINK_DIR
-  fi
-  rake install
-  if ! [ -h $LINK_DIR ]; then
-    echo "Warning! Your lib $LINK_DIR is no symlink. Linking back for you..."
-    rm -rf "$LINK_DIR~"
-    mv "$LINK_DIR" "$LINK_DIR~"
-    ln -sf $HOME/opentox-ruby/www/opentox/opentox-ruby/lib `echo ${LINK_DIR::${#LINK_DIR}-3}`
-  fi
-  echo "Please execute 'otstart' to restart."
-  cd "$START_DIR"
-}
-
-# Start the server
-otstart() {
-  otconfig
-  otkill
-  sudo bash -c "nohup redis-server $HOME/opentox-ruby/redis-2.2.2/redis.conf >/dev/null 2>&1 &"
-  sudo bash -c "nohup nginx -c $HOME/opentox-ruby/nginx/conf/nginx.conf >/dev/null 2>&1 &"
-  sleep 2
-  if ! pgrep -u root nginx>/dev/null 2>&1; then echo "Failed to start nginx."; fi
-  if ! pgrep -u root redis-server>/dev/null 2>&1; then echo "Failed to start redis."; fi
-}
-
-# Display log
-alias otless='less $HOME/.opentox/log/production.log'
-
-# Tail log
-alias ottail='tail -f $HOME/.opentox/log/production.log'
-
-# Reload the server
-otreload() {
-  otconfig
-  sudo bash -c "nginx -s reload"
-}
-
-# Kill the server
-otkill() {
-  otconfig
-  sudo killall -u root nginx >/dev/null 2>&1
-  sudo bash -c "redis-cli -p $OHM_PORT shutdown >/dev/null 2>&1"
-  while sudo ps x | grep PassengerWatchdog | grep -v grep >/dev/null 2>&1; do sleep 1; done
-  while sudo ps x | grep Rack | grep -v grep >/dev/null 2>&1; do sleep 1; done
-  for p in `pgrep -u root R 2>/dev/null`; do sudo kill -9 $p; done
-}