#!/bin/sh # Main Opentox-ruby install script # Author: Christoph Helma, Andreas Maunz [ "`id -u`" = "0" ] && echo "This script must not be run as root" 1>&2 && exit 1 echo echo "OpenTox Ruby" echo "Hit If all services are stoppped, else hit ." read delete_me echo "Note: CONFIG (~/.opentox) will be backupped." mkdir -p $OT_PREFIX/tmp/ >/dev/null 2>&1 DATE=`date +_%Y%m%d_%H_%M` echo "Backups (if any):" backup_targets="$HOME/.opentox $HOME/opentox-ruby" for bt in $backup_targets; do if [ -f $bt ]; then mv -v --backup=numbered $bt $bt$DATE elif [ -d $bt ]; then mv -v --backup=numbered -T $bt $bt$DATE fi done echo "Backup finished." . ./utils.sh check_log `basename $0` echo echo "Welcome to base installation for OpenTox compatible services on Ruby and Debian." echo "IMPORTANT: Hit to adjust config.sh first ( to continue)." read delete_me echo echo -n "We need to do some privileged action. " sudo echo -n "" echo [ -f $OT_PREFIX/install/utils.sh ] || (cmd="mkdir -p $OT_PREFIX/install && cp utils.sh $OT_PREFIX/install" && run_cmd "$cmd" "utils.sh => $OT_PREFIX/install") [ -f $HOME/.opentox/config/install/config.sh ] || (cmd="mkdir -p $HOME/.opentox/config/install && cp config.sh $HOME/.opentox/config/install" && run_cmd "$cmd" "config.sh => $HOME/.opentox/config/install") [ -f $OT_DEFAULT_CONF ] || (cmd="echo '\$aa = { :uri => nil }' > $OT_DEFAULT_CONF" && run_cmd "$cmd" "default.rb => $HOME/.opentox/config") . ./base-install # Debian specific; disable this for others. ./openbabel-install # Download, compile and build openbabel. Install to OT_PREFIX ./raptor2-install # Download, compile and build raptor2. Install to OT_PREFIX. ./rasqal-install # Download, compile and build rasqal. Install to OT_PREFIX. ./4store-install # Download, compile and build 4store. Install to OT_PREFIX. check_utils "git" if [ ! -d ~/.rbenv ]; then cmd="$GIT clone git://github.com/sstephenson/rbenv.git ~/.rbenv" && run_cmd "$cmd" "rbenv" else echo "NOTE: 'rbenv' already installed. Leaving untouched." fi if ! grep "rbenv" $OT_UI_CONF >/dev/null 2>&1 ; then echo 'if ! echo "$PATH" | grep "$HOME/.rbenv/bin">/dev/null 2>&1; then export PATH="$HOME/.rbenv/bin:$PATH"; eval "$(rbenv init -)"; fi' >> $OT_UI_CONF fi [ -f $HOME/.opentox/config/pc_descriptors.yaml ] || (cmd="cp pc_descriptors.yaml $HOME/.opentox/config/" && run_cmd "$cmd" "Pc descriptor file") [ -f $HOME/.opentox/config/jl_keys.yaml ] || (cmd="cp jl_keys.yaml $HOME/.opentox/config/" && run_cmd "$cmd" "Joelib keys file") [ -f $OT_TOOLS_CONF ] || (cmd="cp ot-tools-user.sh $OT_TOOLS_CONF" && run_cmd "$cmd" "ot-tools.sh => $HOME/.opentox)") # Install global ruby version . ./utils.sh install_ruby global notify