install


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#!/bin/sh
# Main Opentox-ruby install script
# Author: Christoph Helma, Andreas Maunz

if [ "$(id -u)" = "0" ]; then
  echo "This script must not be run as root" 1>&2
  exit 1
fi

echo
echo "Warning! If all IST services are stoppped press return, else <Ctrl+C> to stop installation."
echo "Note: Your data will be backupped."
read help_var
echo 

mkdir -p $OT_PREFIX/tmp/ >/dev/null 2>&1
DATE=`date +_%Y%m%d_%H_%M`

echo
echo "Backups (if any)."
echo
backup_targets="$HOME/.opentox $HOME/opentox-ruby"
for bt in $backup_targets; do
  if [ -f $bt ]; then
    mv -v --backup=numbered $bt $bt$DATE
  elif [ -d $bt ]; then
    mv -v --backup=numbered -T $bt $bt$DATE
  fi
done

LOG="$OT_PREFIX/tmp/`basename $0`-log.txt"
. "./utils.sh"
echo
echo "Opentox-ruby installation."
echo "You may need to give root password for some privileged actions right now and later:"
echo
cmd="sudo echo -n \"\"" && run_cmd "$cmd" "Acquire privileges"

echo "Cleaning up $OT_PREFIX/tmp files."
rm -rf $OT_PREFIX/tmp/openbabel* $OT_PREFIX/tmp/kernlab* $OT_PREFIX/tmp/ruby*

. "./base-install.sh"
. "./openbabel.sh"

echo
echo "Installation finished."
echo "Destination (OT_PREFIX): '$OT_PREFIX'" 
echo
echo "IMPORTANT: How to configure your system:"
echo "IMPORTANT: a) Include '$OT_UI_CONF' in shell startup (e.g. ~/.bashrc)."
echo "IMPORTANT: b) Manually source '$OT_UI_CONF' every time."
echo "IMPORTANT: The command in both cases: '. $OT_UI_CONF'"
echo
echo "Thank you for your attention."
echo