install


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#!/bin/sh
# Main Opentox-ruby install script
# Author: Christoph Helma, Andreas Maunz

if [ "$(id -u)" = "0" ]; then
  echo "This script must not be run as root" 1>&2
  exit 1
fi

echo
echo "Warning! Hit <Return> If all services are stoppped, else <Ctrl+C>."
echo "Note: CONFIG (~/.opentox) will be backupped."
read help_var

mkdir -p $OT_PREFIX/tmp/ >/dev/null 2>&1
DATE=`date +_%Y%m%d_%H_%M`

echo "Backups (if any)."
echo
backup_targets="$HOME/.opentox $HOME/opentox-ruby"
for bt in $backup_targets; do
  if [ -f $bt ]; then
    mv -v --backup=numbered $bt $bt$DATE
  elif [ -d $bt ]; then
    mv -v --backup=numbered -T $bt $bt$DATE
  fi
done

. ./utils.sh


LOG="$OT_PREFIX/tmp/`basename $0`.log"
echo
echo "Welcome to base installation for OpenTox compatible services on Ruby and Debian."
echo "This will install:"
echo "- Debian packages"
echo "- OpenBabel (from source)."
echo
echo "IMPORTANT: press Ctrl+C to adjust config.sh first (<Return> to continue)."
read delete_me
echo 
echo "You may need to give root password for some privileged actions right now and later:"
echo
cmd="sudo echo -n \"\"" && run_cmd "$cmd" "Acquire privileges"

rm -rf $OT_PREFIX/tmp/openbabel* $OT_PREFIX/tmp/ruby*
cmd="mkdir -p $OT_PREFIX/install && cp utils.sh $OT_PREFIX/install" && run_cmd "$cmd" "Install utils.sh to OT_PREFIX"
cmd="mkdir -p $HOME/.opentox/config/install && cp config.sh $HOME/.opentox/config/install" && run_cmd "$cmd" "Install config.sh to CONFIG (~/.opentox)"
. ./base-install.sh
. ./openbabel.sh

echo
echo "Installation finished."
echo "Destination (OT_PREFIX): '$OT_PREFIX'" 
echo
echo "IMPORTANT: How to configure your system:"
echo "IMPORTANT: a) Include '$OT_UI_CONF' in shell startup (e.g. ~/.bashrc)."
echo "IMPORTANT: b) Manually source '$OT_UI_CONF' every time."
echo "IMPORTANT: The command in both cases: '. $OT_UI_CONF'"
echo "IMPORTANT: Your system is NOT configured right now."
echo
echo "Thank you for your attention."
echo