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# Some useful scripts to put in your ~/.bashrc in case you are using bash (assuming OT_PREFIX is '~/opentox-ruby')
# Load server config
otconfig() {
source $HOME/.opentox/opentox-ui.sh
}
# Start unicorn
# @param1 [service_name]
# @param2 integer Port
# @example start_unicorn algorithm 8081
start_unicorn() {
cd $HOME/opentox-ruby/$1
nice bash -c "nohup unicorn -p $2 >/dev/null 2>&1 &"
}
# Start the server
otstart() {
if [ $# != 1 ]
then
echo "One argument required: [service_name] or 'all'"
echo "usage: otstart [all|algorithm|compound|dataset|feature|model|task|validation|4store]"
return 1
fi
otconfig
otkill $1
DIR=`pwd`
case "$1" in
"algorithm")
start_unicorn $1 8081;;
"compound")
echo "$1 not available yet.";;
#start_unicorn $1 8082;;
"dataset")
start_unicorn $1 8083;;
"feature")
start_unicorn $1 8084;;
"model")
echo "$1 not available yet.";;
#start_unicorn $1 8085;;
"task")
start_unicorn $1 8086;;
"validation")
echo "$1 not available yet.";;
#start_unicorn $1 8087;;
"4store")
nice bash -c "nohup $HOME/opentox-ruby/4S/bin/4s-backend opentox >/dev/null 2>&1 &";
sleep 1;
nice bash -c "nohup $HOME/opentox-ruby/4S/bin/4s-httpd -D -H localhost -p 8088 opentox >/dev/null 2>&1 &";
sleep 1;
if ! pgrep -u $USER 4s-backend>/dev/null 2>&1; then echo "Failed to start 4s-backend."; fi
if ! pgrep -u $USER 4s-httpd>/dev/null 2>&1; then echo "Failed to start 4s-httpd."; fi
;;
"all")
otstart 4store;
otstart algorithm;
otstart dataset;
otstart feature;
otstart task;
;;
*)
echo "One argument required: [service_name] or 'all'";
echo "usage: otstart [all|algorithm|compound|dataset|feature|model|task|validation|4store]";
return 1;
;;
esac
cd $DIR
}
# Display log
alias otless='less $HOME/.opentox/log/development.log'
# Tail log
alias ottail='tail -f $HOME/.opentox/log/development.log'
# kill unicorn
# @param1 integer Port
# @example kill_unicorn 8081
kill_unicorn() {
for p in `ps x | grep 'unicorn' | grep $1 | grep -v grep | awk '{print $1}'`; do kill -9 $p; done;
}
# Kill the server
otkill() {
if [ $# != 1 ]
then
echo "One argument required: [service_name] or 'all'"
echo "usage: otkill [all|algorithm|compound|dataset|feature|model|task|validation|4store]"
return 1
fi
otconfig
case "$1" in
"algorithm") kill_unicorn 8081;;
"compound") #kill_unicorn 8082;;
echo "$1 not available yet.";;
"dataset") kill_unicorn 8083;;
"feature") kill_unicorn 8084;;
"model") #kill_unicorn 8085;;
echo "$1 not available yet.";;
"task") kill_unicorn 8086;;
"validation") #kill_unicorn 8087;;
echo "$1 not available yet.";;
"4store")
killall 4s-httpd >/dev/null 2>&1;
killall 4s-backend >/dev/null 2>&1;
;;
"all")
otkill algorithm;
#otkill compound;
otkill dataset;
otkill feature;
#otkill model;
otkill task;
#otkill validation;
otkill 4store;
;;
*)
echo "One argument required: [service_name] or 'all'";
echo "usage: otkill [all|algorithm|compound|dataset|feature|model|task|validation|4store]";
return 1;
;;
esac
}
|
