From 36ea2f865014a761be9fe74719f4c88dbaffeb81 Mon Sep 17 00:00:00 2001
From: mguetlein <martin.guetlein@gmail.com>
Date: Mon, 27 Oct 2014 15:48:01 +0100
Subject: inital commit more documentation will be added

---
 nch/07_validate.rb | 52 ++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 52 insertions(+)
 create mode 100755 nch/07_validate.rb

(limited to 'nch/07_validate.rb')

diff --git a/nch/07_validate.rb b/nch/07_validate.rb
new file mode 100755
index 0000000..4641983
--- /dev/null
+++ b/nch/07_validate.rb
@@ -0,0 +1,52 @@
+#!/usr/bin/env ruby
+
+require "./config.rb"
+
+require "bundler"
+Bundler.require
+
+DATA.each do |d|
+  puts ""
+  puts d
+
+  dataset_uri = dataset_uri(d)
+  prediction_feature = prediction_feature(d)
+  test_dataset_uri = test_dataset_uri(d) if d=="MOU"
+
+  [ new_feature_dataset_uri(d), orig_feature_dataset_uri(d) ].each do |feature_dataset_uri|
+    puts "\nvalidating with features #{feature_dataset_uri}"
+
+    params = { :dataset_uri => dataset_uri,
+      :algorithm_uri => File.join($algorithm[:uri],"lazar"),
+      :algorithm_params => "feature_dataset_uri=#{feature_dataset_uri};min_sim=0.4;min_train_performance=0.1",
+      :prediction_feature => prediction_feature}
+    if (d=="LOAEL-mol" or d=="LOAEL-mg")
+      params[:loo] = "uniq"
+      cv_uri = wait_for_task(OpenTox::RestClientWrapper.post("http://localhost:8087/validation/crossvalidation/loo",params))
+      cv = OpenTox::Crossvalidation.find(cv_uri)
+      puts "Cross-Validation: "+cv.uri
+      r = OpenTox::CrossvalidationReport.create(cv.uri)
+      puts "Report: "+r.uri
+    elsif (d=="MOU")
+      params[:training_dataset_uri] = params.delete(:dataset_uri)
+      params[:test_dataset_uri] = test_dataset_uri
+      v = OpenTox::Validation.create_training_test_validation(params)
+      puts "Validation: "+v.uri
+      r = OpenTox::ValidationReport.create(v.uri)
+      puts "Report: "+r.uri
+
+#      cv_uri = wait_for_task(OpenTox::RestClientWrapper.post("http://localhost:8087/validation/crossvalidation",params))
+#      cv = OpenTox::Crossvalidation.find(cv_uri)
+#      puts "Cross-Validation: "+cv.uri
+#      r = OpenTox::CrossvalidationReport.create(cv.uri)
+#      puts "Report: "+r.uri
+    else
+      raise "add routine"
+    end
+
+#        :split_ratio => 0.925, # only required for training-test-split
+#        :random_seed => 2}
+#      v = OpenTox::Validation.create_training_test_split(p)
+  end
+end
+
-- 
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