#!/usr/bin/env ruby require "./config.rb" require "bundler" Bundler.require DATA.each do |d| puts "" puts d dataset_uri = dataset_uri(d) prediction_feature = prediction_feature(d) test_dataset_uri = test_dataset_uri(d) if d=="MOU" [ new_feature_dataset_uri(d), orig_feature_dataset_uri(d) ].each do |feature_dataset_uri| puts "\nvalidating with features #{feature_dataset_uri}" params = { :dataset_uri => dataset_uri, :algorithm_uri => File.join($algorithm[:uri],"lazar"), :algorithm_params => "feature_dataset_uri=#{feature_dataset_uri};min_sim=0.4;min_train_performance=0.1", :prediction_feature => prediction_feature} if (d=="LOAEL-mol" or d=="LOAEL-mg") params[:loo] = "uniq" cv_uri = wait_for_task(OpenTox::RestClientWrapper.post("http://localhost:8087/validation/crossvalidation/loo",params)) cv = OpenTox::Crossvalidation.find(cv_uri) puts "Cross-Validation: "+cv.uri r = OpenTox::CrossvalidationReport.create(cv.uri) puts "Report: "+r.uri elsif (d=="MOU") params[:training_dataset_uri] = params.delete(:dataset_uri) params[:test_dataset_uri] = test_dataset_uri v = OpenTox::Validation.create_training_test_validation(params) puts "Validation: "+v.uri r = OpenTox::ValidationReport.create(v.uri) puts "Report: "+r.uri # cv_uri = wait_for_task(OpenTox::RestClientWrapper.post("http://localhost:8087/validation/crossvalidation",params)) # cv = OpenTox::Crossvalidation.find(cv_uri) # puts "Cross-Validation: "+cv.uri # r = OpenTox::CrossvalidationReport.create(cv.uri) # puts "Report: "+r.uri else raise "add routine" end # :split_ratio => 0.925, # only required for training-test-split # :random_seed => 2} # v = OpenTox::Validation.create_training_test_split(p) end end