first commit

1 files changed, 58 insertions, 0 deletions

diff --git a/application.rb b/application.rb
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index 0000000..bd1985c
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+require 'rubygems'
+require 'compass' #must be loaded before sinatra
+require 'sinatra'
+require 'haml' #must be loaded after sinatra
+require 'opentox-client'
+require 'opentox-server'
+require File.join(File.dirname(__FILE__),'helper.rb')
+require File.join(ENV["HOME"],".opentox","config","lazar-gui.rb")
+
+
+get '/?' do
+  redirect to('/predict') 
+end
+
+get '/predict/?' do
+  @models = []
+  models = OpenTox::Model.all $model[:uri]
+  models.each do |model|
+    model.get
+    @models << model
+  end
+  haml :predict
+end
+
+post '/predict/?' do
+  @identifier = params[:identifier]
+  @compound = OpenTox::Compound.from_smiles $compound[:uri], @identifier.to_s
+  @models = []
+  @predictions = []
+  lazar = OpenTox::Algorithm.new File.join($algorithm[:uri],"lazar")
+
+  params[:selection].each do |model|
+    @mselected = model[0]
+    @mall = OpenTox::Model.all $model[:uri]
+    @mall.each do |m|
+      m.get
+      @models << m if m.title.match("#{@mselected}")
+    end
+  end
+  @models.each do |m| 
+    @prediction_uri = m.run :compound_uri => "#{@compound.uri}"
+    prediction = OpenTox::Dataset.new @prediction_uri
+    @predictions << prediction
+  end
+
+  @prediction_results = []
+  @predictions.each{|p| @prediction_results << p.get}
+
+  
+  haml :prediction
+end
+
+get '/stylesheets/:name.css' do
+  content_type 'text/css', :charset => 'utf-8'
+  sass(:"stylesheets/#{params[:name]}", Compass.sass_engine_options )
+end
+
+