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-rw-r--r--views/batch.haml160
1 files changed, 86 insertions, 74 deletions
diff --git a/views/batch.haml b/views/batch.haml
index c1b45f6..38c8c6e 100644
--- a/views/batch.haml
+++ b/views/batch.haml
@@ -2,11 +2,11 @@
%a.btn.btn-warning{:href => to('/predict')}
%span.glyphicon.glyphicon-menu-left{:aria=>{:hidden=>"true"}}
New Prediction
- %a.btn.btn-success{:href=>"#{to("/predict/#{@filename}")}", :title=>"download"}
+ %a.btn.btn-success{:id => "downbutton", :href=>"#{to("/predict/#{@tmppath}/#{@filename}")}", :title=>"download"}
%span.glyphicon.glyphicon-download-alt
- download CSV
+ Download CSV
- / show processed file name
+ / show file name
%topline
%div.row
%div.col-md-4
@@ -18,83 +18,95 @@
%div.table-responsive
%table.table.table-bordered{:id=>"batch", :style=>"background-color:white;"}
%tbody
- - if @warnings
- - @warnings.each do |warning|
+ - if @warnings
+ - @warnings.each do |warning|
+ %tr
+ %td
+ %b Warning
+ %td
+ = warning.sub(/\b(tmp\/)\b/,"")
+ - @view.each do |compound, array|
%tr
- %td
- %b Warning
- %td
- = warning.sub(/\b(tmp\/)\b/,"")
- / key = compound, values = [model,prediction]
- - @batch.each do |key, values|
- - compound = key
- %tr
- %td{:style=>"vertical-align:top;"}
- %p= compound.svg
- %p= compound.smiles
-
- / array[0] = model, array[1] = prediction
- - values.each_with_index do |array,i|
- %td{:style=>"vertical-align:top;white-space:nowrap;"}
- - model = array[0]
- / model type (classification|regression)
- - model.model.class.to_s.match("Classification") ? type = "Classification" : type = "Regression"
- - unit = model.unit
- - prediction = array[1]
-
- %b{:class => "title"}
- = "#{model.endpoint.gsub('_', ' ')} (#{model.species})"
-
- / check for prediction
- - if prediction[:neighbors].size > 0
- %p
- / show model type (classification|regression)
- %b Type:
- = type
- %p
- / check for database hit
- - if prediction[:info] =~ /\b(identical)\b/i
-
- / show message about dbhit and measurements
+ %td{:style=>"vertical-align:top;"}
+ %p= compound.svg
+ %p= compound.smiles
+ - array.each do |model,prediction|
+ %td{:style=>"vertical-align:top;white-space:nowrap;"}
+ - model.model.class.to_s.match("Classification") ? type = "Classification" : type = "Regression"
+ - unit = model.unit
+
+ %b{:class => "title"}
+ = "#{model.endpoint.gsub('_', ' ')} (#{model.species})"
+
+ / check for prediction
+ - if prediction[:value]
%p
- %b Compound is part of the training dataset
+ / show model type (classification|regression)
+ %b Type:
+ = type
+ %p
+ / check for database hit
+ - if prediction[:info] =~ /\b(identical)\b/i
+
+ / show message about dbhit and measurements
%p
- %b Measured activity:
+ %b Compound is part of the training dataset
+ %p
+ %b Measured activity:
+ %br
+ - if prediction[:measurements].is_a?(Array)
+ = (type == "Regression") ? prediction[:measurements].collect{|value| $logger.debug value ; "#{value.delog10.signif(3)} (#{unit})</br>#{compound.mmol_to_mg(value.delog10.signif(3))} #{unit =~ /mmol\/L/ ? "(mg/L)" : "(mg/kg_bw/day)"}"}.join("</br>") : prediction[:measurements].join(", ")
+ - else
+ - $logger.debug prediction[:measurements]
+ - $logger.debug prediction[:measurements].delog10
+ - $logger.debug prediction[:measurements].delog10.signif(3)
+ = (type == "Regression") ? "#{prediction[:measurements].delog10.signif(3)} (#{unit})</br>#{compound.mmol_to_mg(prediction[:measurements].delog10.signif(3))} #{(unit =~ /\b(mol\/L)\b/) ? "(mg/L)" : "(mg/kg_bw/day)"}" : prediction[:measurements]
+
+
+ / show prediction
+ %p
+ %b Prediction:
%br
- - if prediction[:measurements].is_a?(Array)
- = (type == "Regression") ? prediction[:measurements].collect{|value| "#{value.delog10} (#{unit})</br>#{compound.mmol_to_mg(value.delog10)} #{unit =~ /mmol\/L/ ? "(mg/L)" : "(mg/kg_bw/day)"}"}.join("</br>") : prediction[:measurements].join(", ")
+ = (type == "Regression") ? "#{prediction[:value].delog10.signif(3)} (#{unit})</br>#{compound.mmol_to_mg(prediction[:value].delog10.signif(3))} #{(unit =~ /\b(mol\/L)\b/) ? "(mg/L)" : "(mg/kg_bw/day)"}" : prediction[:value]
+
+ / show prediction interval or probability
+ %p
+ - if type == "Regression"
+ %b 95% Prediction interval:
+ - interval = (prediction[:prediction_interval].nil? ? nil : prediction[:prediction_interval])
+ %br
+ = interval.nil? ? "" : "#{interval[1].delog10.signif(3)} - #{interval[0].delog10.signif(3)} (#{unit})"
+ %br
+ = "#{compound.mmol_to_mg(interval[1].delog10.signif(3))} - #{compound.mmol_to_mg(interval[0].delog10.signif(3))} #{(unit =~ /\b(mol\/L)\b/) ? "(mg/L)" : "(mg/kg_bw/day)"}" if !prediction[:prediction_interval].nil?
- else
- = (type == "Regression") ? "#{prediction[:measurements].delog10} (#{unit})</br>#{compound.mmol_to_mg(prediction[:measurements].delog10)} #{(unit =~ /\b(mol\/L)\b/) ? "(mg/L)" : "(mg/kg_bw/day)"}" : prediction[:measurements]
-
-
- / show prediction
- %p
- %b Prediction:
- %br
- = (type == "Regression") ? "#{prediction[:value].delog10} (#{unit})</br>#{compound.mmol_to_mg(prediction[:value].delog10)} #{(unit =~ /\b(mol\/L)\b/) ? "(mg/L)" : "(mg/kg_bw/day)"}" : prediction[:value]
-
- / show prediction interval or probability
+ %b Probability:
+ - unless prediction[:probabilities].nil?
+ - probabilities = ""
+ - prediction[:probabilities].each{|k,v| probabilities += "#{k}: #{v.signif(3)}<br>"}
+ %br
+ = probabilities
+ / show warnings
%p
- - if type == "Regression"
- %b 95% Prediction interval:
- - interval = (prediction[:prediction_interval].nil? ? nil : prediction[:prediction_interval])
+ - if !prediction[:info].blank?
+ %b Info:
%br
- = interval.nil? ? "--" : "#{interval[1].delog10} - #{interval[0].delog10} (#{unit})"
- %br
- = "#{compound.mmol_to_mg(interval[1].delog10)} - #{compound.mmol_to_mg(interval[0].delog10)} #{(unit =~ /\b(mol\/L)\b/) ? "(mg/L)" : "(mg/kg_bw/day)"}" if !prediction[:prediction_interval].nil?
- - else
- %b Probability:
- - unless prediction[:probabilities].nil?
+ %p=prediction[:info].sub(/\'.*\'/,"").sub(/,/, ",<br>")
+ - if !prediction[:warnings].blank?
+ %b Warnings:
+ - prediction[:warnings].uniq.each do |warning|
%br
- = "#{prediction[:probabilities].keys[0]}: #{prediction[:probabilities].values[0]}"
+ %p=warning.sub(/substances/, "substances<br>").sub(/prediction\:/, "prediction\:<br>")
+
+ / no prediction
+ - else
+ %br
+ - if !prediction[:info].blank?
+ %b Info:
+ %br
+ %p=prediction[:info].sub(/\'.*\'/,"").sub(/,/, ",<br>")
+ - if !prediction[:warnings].blank?
+ %b Warnings:
+ - prediction[:warnings].uniq.each do |warning|
%br
- / show warnings
- %p
- - if !prediction[:warning].nil?
- %b Warnings:
- %a.btn.glyphicon.glyphicon-info-sign{:href=>"javascript:void(0)", :title=>"Warnings", :tabindex=>"0", data: {trigger:"focus", toggle:"popover", placement:"left", html:"true", content:"#{prediction[:warning]}"}}
-
- / no prediction
- - else
- %p
- = "Not enough similar compounds </br>in training dataset."
+ %p=warning.sub(/substances/, "substances<br>").sub(/prediction\:/, "prediction\:<br>")
+ %tr
generated by cgit v1.2.3 (git 2.25.1) at 2024-04-28 07:30:26 +0000