diff options
Diffstat (limited to 'views/model_details.haml')
| -rw-r--r-- | views/model_details.haml | 289 |
1 files changed, 152 insertions, 137 deletions
diff --git a/views/model_details.haml b/views/model_details.haml index 5c3aa4f..d85d2fb 100644 --- a/views/model_details.haml +++ b/views/model_details.haml @@ -1,141 +1,156 @@ -%b Model: -%br -Source: -%a{:href=>model.source, :rel=>"external"} - = model.source -%br -- model.classification? ? type = "Classification" : type = "Regression" -= "Type:\t" -= type -%br -- training_dataset = OpenTox::Dataset.find model.model.training_dataset_id -= "Training compounds:\t" -= training_dataset.data_entries.size -%br -= "Training dataset:\t" -%a{:href=>"#{to("/predict/dataset/#{training_dataset.name}")}"} - = training_dataset.name -%br -%b Algorithms: -%br -Similarity: -%a{:href=> "http://www.rubydoc.info/gems/lazar/OpenTox%2F#{model.model.algorithms["similarity"]["method"].sub("::", "%2F")}", :rel=>"external"} - = model.model.algorithms["similarity"]["method"] -= ", min: #{model.model.algorithms["similarity"]["min"]}" -%br -Prediction: -%a{:href=>"http://www.rubydoc.info/gems/lazar/OpenTox%2F#{model.model.algorithms["prediction"]["method"].sub("::","%2f")}", :rel=>"external"} - = model.model.algorithms["prediction"]["method"] -%br -Descriptors: -= model.model.algorithms["descriptors"]["method"]+"," -= model.model.algorithms["descriptors"]["type"] -%p -- if type == "Classification" - %b Independent crossvalidations: -- else - %b Independent crossvalidations (-log10 transformed): -%div.row{:id=>"validations#{model.id}", :style=>"background-color:#f5f5f5;"} - - crossvalidations.each do |cv| - %span.col-xs-4.col-sm-4.col-md-4.col-lg-4 - = "Num folds:\t" - = cv.folds - %br - = "Num instances:\t" - = cv.nr_instances - %br - = "Num unpredicted" - = cv.nr_unpredicted - - if model.classification? - %br - = "Accuracy:\t" - = cv.accuracy.round(3) if cv.accuracy - %br - = "Weighted accuracy:\t" - = cv.weighted_accuracy.round(3) if cv.weighted_accuracy - - if cv.true_rate +%div.panel.panel-default + %div.panel-heading + %b Model: + %div.panel-body + Source: + %a{:href=>model.source, :rel=>"external"} + = model.source + %br + - model.classification? ? type = "Classification" : type = "Regression" + = "Type:\t" + = type + %br + - training_dataset = OpenTox::Dataset.find model.model.training_dataset_id + = "Training compounds:\t" + = training_dataset.data_entries.size + %br + = "Training dataset:\t" + %a{:href=>"#{to("/predict/dataset/#{training_dataset.name}")}"} + = training_dataset.name + +%div.panel.panel-default + %div.panel-heading + %b Algorithms: + %div.panel-body + Similarity: + %a{:href=> "http://www.rubydoc.info/gems/lazar/OpenTox%2F#{model.model.algorithms["similarity"]["method"].sub("::", "%2F")}", :rel=>"external"} + = model.model.algorithms["similarity"]["method"] + = ", min: #{model.model.algorithms["similarity"]["min"]}" + %br + Prediction: + %a{:href=>"http://www.rubydoc.info/gems/lazar/OpenTox%2F#{model.model.algorithms["prediction"]["method"].sub("::","%2f")}", :rel=>"external"} + = model.model.algorithms["prediction"]["method"] + %br + Descriptors: + = model.model.algorithms["descriptors"]["method"]+"," + = model.model.algorithms["descriptors"]["type"] + +%div.panel.panel-default + - if type == "Classification" + %div.panel-heading + %b Independent crossvalidations: + - else + %div.panel-heading + %b Independent crossvalidations (-log10 transformed): + %div.panel-body + /%div.row{:id=>"validations#{model.id}", :style=>"background-color:#f5f5f5;"} + %div.row{:id=>"validations#{model.id}"} + - crossvalidations.each do |cv| + %span.col-xs-4.col-sm-4.col-md-4.col-lg-4 + = "Num folds:\t" + = cv.folds %br - = "True positive rate:\t" - = cv.true_rate[cv.accept_values[0]].round(3) + = "Num instances:\t" + = cv.nr_instances %br - = "True negative rate:\t" - = cv.true_rate[cv.accept_values[1]].round(3) - - if cv.predictivity - %br - = "Positive predictive value:\t" - = cv.predictivity[cv.accept_values[0]].round(3) - %br - = "Negative predictive value:\t" - = cv.predictivity[cv.accept_values[1]].round(3) - %p - - ["confusion_matrix", "weighted_confusion_matrix"].each_with_index do |matrix,idx| - %b= (idx == 0 ? "Confusion Matrix" : "Weighted Confusion Matrix") - %table.table.table-condensed.table-borderless{:style=>"width:20%;"} - %tbody - %tr - %td - %td - %td - %b actual - %td - %td - %tr - %td - %td - %td active - %td inactive - -#%td total - %tr - %td - %b predicted - %td active - %td - =( idx == 1 ? cv.send(matrix)[0][0].round(3) : cv.send(matrix)[0][0]) - %td - =( idx == 1 ? cv.send(matrix)[0][1].round(3) : cv.send(matrix)[0][1]) - -#%td - =cv.confusion_matrix[0][0]+cv.confusion_matrix[0][1] - %tr - %td - %td inactive - %td - =( idx == 1 ? cv.send(matrix)[1][0].round(3) : cv.send(matrix)[1][0]) - %td - =( idx == 1 ? cv.send(matrix)[1][1].round(3) : cv.send(matrix)[1][1]) - -#%td - =cv.confusion_matrix[1][0]+cv.confusion_matrix[1][1] - -#%tr - %td - %td total - %td - =cv.confusion_matrix[0][0]+cv.confusion_matrix[1][0] - %td - =cv.confusion_matrix[0][1]+cv.confusion_matrix[1][1] - %td - -#= "Confusion Matrix:\t" - -#= cv.confusion_matrix + = "Num unpredicted" + = cv.nr_unpredicted + - if model.classification? + %br + = "Accuracy:\t" + = cv.accuracy.round(3) if cv.accuracy + %br + = "Weighted accuracy:\t" + = cv.weighted_accuracy.round(3) if cv.weighted_accuracy + - if cv.true_rate + %br + = "True positive rate:\t" + = cv.true_rate[cv.accept_values[0]].round(3) + %br + = "True negative rate:\t" + = cv.true_rate[cv.accept_values[1]].round(3) + - if cv.predictivity + %br + = "Positive predictive value:\t" + = cv.predictivity[cv.accept_values[0]].round(3) %br - %br - /= "Confidence plot:" - /%p.plot - / %img{:src=>"confp#{cv.id}.svg"} - - if model.regression? - %br - %a.ht5{:href=>"https://en.wikipedia.org/wiki/Root-mean-square_deviation", :rel=>"external"} RMSE: - = cv.rmse.round(3) if cv.rmse - %br - %a.ht5{:href=>"https://en.wikipedia.org/wiki/Mean_absolute_error", :rel=>"external"} MAE: - = cv.mae.round(3) if cv.mae - %br - %a.ht5{:href=>"https://en.wikipedia.org/wiki/Coefficient_of_determination", :rel=>"external"}= "R"+"<sup>2</sup>"+":" - = cv.r_squared.round(3) if cv.r_squared - %br - /= "Confidence plot:" - /%p.plot - / %img{:src=>"/confp#{cv.id}.svg"} - /%br - /= "Correlation plot" - /%p.plot - / %img{:src=>"/corrp#{cv.id}.svg"} + = "Negative predictive value:\t" + = cv.predictivity[cv.accept_values[1]].round(3) + %p + - ["confusion_matrix", "weighted_confusion_matrix"].each_with_index do |matrix,idx| + %b= (idx == 0 ? "Confusion Matrix" : "Weighted Confusion Matrix") + %table.table.table-condensed.table-borderless{:style=>"width:20%;"} + %tbody + %tr + %td + %td + %td + %b actual + %td + %td + %tr + %td + %td + %td active + %td inactive + -#%td total + %tr + %td + %b predicted + %td active + %td + =( idx == 1 ? cv.send(matrix)[0][0].round(3) : cv.send(matrix)[0][0]) + %td + =( idx == 1 ? cv.send(matrix)[0][1].round(3) : cv.send(matrix)[0][1]) + -#%td + =cv.confusion_matrix[0][0]+cv.confusion_matrix[0][1] + %tr + %td + %td inactive + %td + =( idx == 1 ? cv.send(matrix)[1][0].round(3) : cv.send(matrix)[1][0]) + %td + =( idx == 1 ? cv.send(matrix)[1][1].round(3) : cv.send(matrix)[1][1]) + -#%td + =cv.confusion_matrix[1][0]+cv.confusion_matrix[1][1] + -#%tr + %td + %td total + %td + =cv.confusion_matrix[0][0]+cv.confusion_matrix[1][0] + %td + =cv.confusion_matrix[0][1]+cv.confusion_matrix[1][1] + %td + -#= "Confusion Matrix:\t" + -#= cv.confusion_matrix + %br + %br + /= "Confidence plot:" + /%p.plot + / %img{:src=>"confp#{cv.id}.svg"} + - if model.regression? + %br + %a.ht5{:href=>"https://en.wikipedia.org/wiki/Root-mean-square_deviation", :rel=>"external"} RMSE: + = cv.rmse.round(3) if cv.rmse + %br + %a.ht5{:href=>"https://en.wikipedia.org/wiki/Mean_absolute_error", :rel=>"external"} MAE: + = cv.mae.round(3) if cv.mae + %br + %a.ht5{:href=>"https://en.wikipedia.org/wiki/Coefficient_of_determination", :rel=>"external"}= "R"+"<sup>2</sup>"+":" + = cv.r_squared.round(3) if cv.r_squared + %br + /= "Confidence plot:" + /%p.plot + / %img{:src=>"/confp#{cv.id}.svg"} + /%br + /= "Correlation plot" + /%p.plot + / %img{:src=>"/corrp#{cv.id}.svg"} -%br +%div.panel.panel-default + %div.panel-heading + %b QMRF: + %div.panel-body + %a.btn.btn-default.btn-xs{:href=>"#{to("/report/#{model.id}")}", :id=>"report#{model.id}", :style=>"font-size:small;"} + %span.glyphicon.glyphicon-download-alt + XML |